Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LLI6 |
| ProteomeId | EsuBft102_6 |
| Protein domains | Coil |
| Protein domains | IPR003690 |
| Protein domains | PTHR13068 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 7 |
| Max annot lvl | 2759|Eukaryota |
| Length | 163 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.69e-139 |
| EggNOG OGs | KOG1267@1|root,KOG1267@2759|Eukaryota |
| Ec32 ortholog description | Mitochodrial transcription termination factor |
| Ec32 ortholog | Ec-22_001100.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K15032 |
| Description | termination of mitochondrial transcription |
| COG category | S |
| BRITE | ko00000,ko03012,ko03029 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0005739 |
| GO | 0003690 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft102_6a-0001 ID=EsuBft102_6a-0001|Name=EsuBft102_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1631bp|location=Sequence derived from alignment at Scaffold_372:280675..285092- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCGTGCACAGCAGCAAATGCCAGTGCCAGAGCACAGCAGCATCGCCATG
AATGACAAGATATGCGTTTCGAAGACCATGCTATTGCTGCTGTTTGTCAG
CATCGACGGCGGCAGGCTGTCGAAGATACACGCCGTGGATGCATTTGTCC
CACCAAGGCCAGTATCGTATTCAACAGGTCGAGGGATTTTGGATAGTCGC
TGCAGGAATCGACCTCGGTGGCTGCAGCAGTTGAACCTACCATTAAGGCT
GTTGCAGGATGATCTCCTGTTGTCACGTTCTAGCCCCGGCAAGAAGAGCA
GCTTGTCCATGGGGGGTAAAGGAACGGATCTCGGGGCCTTGCCTTGGAAG
ACCGACTCGCGGAGCGTCAGGGAATGGCTGGGCCTCTCTGAACGGGAGAT
AGACAAGCTGCGAGAGACGCTCACATCCGCGTCACGCCGCAACCTCCTCG
ACCAGAGGCTTGACCTGCTGGCCAATGGGCAAACCGACTCTGTGTTGGGG
TTTCTCAGAGTGGAGTTTCGCATGTCTAAGGCAAACATTCGCTCTTTGAT
ATCGAGGCACCCGCAACTCCTCTTCATGCCTCGACAGCAAGCGGTGGATC
GATGTTCCTGGCTGTCGGAGAATCTCAGCCTCAGCAAGAAGAAACTCGTG
AAGATGCTGCTAAAGTTCCCCAGGTTGTTTGGGTATAGCGAGAAGGGGAG
CTACGCTCCCCTGGTAGATTGGTTCAGATCATACCTGGGGATGGACACTC
GGGAGGTGGCGCGGTTGGTGGTCCGACTACCGCAGCTTTTCAGCTTCAAG
CCCGATGAGAACATTGAGGACACGGCTAGGTTTCTGGAGTCGCTCGGGCT
TAGCCGCAAGGAGGTCTGCAAGATGGTGCTTTTACATCCCGAAACTTTCA
GCTACAGTATCGAAGAGAAAGTAATTCCAATGCTCGAGTGGCTGCAGAAG
GAGCTGAGAGCTTCACCCGACGAGGTGATACAAATGGTCGCCAGATATCC
CAGCCTCTTAGGATGCAGCCAAACGAAGAATCTGGCGCCGAAGTTCTGCT
TCTTCCGGACGACCCTGAAGGCATCGGTTGCCGACATTCGAGCGGCCGTG
GTGGCCACACCGAGCCTCCTTGGCTACAGCCTCGACTATCGCATCTGCCC
GAGGGCGACGCTGATGGTTGAGAGAGGCATCGTTCCCGACTTCGGCGAGC
ACAGGTGGCTCTTGACCACGGCCTCAGAAGAAAACTTTGAGCAGTGGATG
AAGGCCAACAGCGGCACAAGACGGCTGTAAACTACGTCGAGGTTGAAGCT
GGGACAGAAGGGTAAAGAGTGAGCAGGCTTCGAGGAGCAGTGTTACCGGG
CCTGTGCTCGCTGTTGATAACCTCGGTTGGGGTGATCGGTTTGCCCTATC
GTCGAGAACAAGATGACGACGGGTTCGGAGAAGATTCGCGGCCGGGCGCC
CAGAATCGAGCTACGTGAGCATGGCTGGCCGAACGCTCGTGCTGTGTACA
GGCGGGCGGGGAAACGCGCACTAAACAGACTTAAGGAACTTATCAGTCCC
CGCCTTGAAGGTCGCCCTTATTTCGTCAGAAATATGCTCAAGACTGTAAG
TAAACGCCGTCAAAGAAACGGACGAGTGACT back to topprotein sequence of EsuBft102_6a-0001 >EsuBft102_6 ID=EsuBft102_6|Name=EsuBft102_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=420bp
MPVPEHSSIAMNDKICVSKTMLLLLFVSIDGGRLSKIHAVDAFVPPRPVS
YSTGRGILDSRCRNRPRWLQQLNLPLRLLQDDLLLSRSSPGKKSSLSMGG
KGTDLGALPWKTDSRSVREWLGLSEREIDKLRETLTSASRRNLLDQRLDL
LANGQTDSVLGFLRVEFRMSKANIRSLISRHPQLLFMPRQQAVDRCSWLS
ENLSLSKKKLVKMLLKFPRLFGYSEKGSYAPLVDWFRSYLGMDTREVARL
VVRLPQLFSFKPDENIEDTARFLESLGLSRKEVCKMVLLHPETFSYSIEE
KVIPMLEWLQKELRASPDEVIQMVARYPSLLGCSQTKNLAPKFCFFRTTL
KASVADIRAAVVATPSLLGYSLDYRICPRATLMVERGIVPDFGEHRWLLT
TASEENFEQWMKANSGTRRL back to topmRNA from alignment at Scaffold_372:280675..285092- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft102_6a-0001 ID=EsuBft102_6a-0001|Name=EsuBft102_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4418bp|location=Sequence derived from alignment at Scaffold_372:280675..285092- (Ectocarpus subulatus male Bft15b)
CCCGTGCACAGCAGCAAATGCCAGTGCCAGAGCACAGCAGCATCGCCATG
AATGACAAGATATGCGTTTCGAAGACCATGCTATTGCTGCTGTTTGTCAG
CATCGACGGCGGCAGGCTGTCGAAGATACACGCCGTGGATGCATTTGTCC
CACCAAGGCCAGTATCGTATTCAACAGGTCGAGGGATTTTGGATAGTCGC
TGCAGGAATCGACCTCGGTGGCTGCAGCAGTTGAACCTACCATTAAGGCT
GTTGCAGGATGATCTCCTGTTGTCACGTTCTAGCCCCGGCAAGAAGAGCA
GCTTGTCCATGGGGGGTAAAGGAACGGATCTCGGGGCCTTGCCTTGGAAG
ACCGACTCGCGGAGCGTCAGGGAATGGCTGGGCCTCTCTGAACGGGAGAT
AGACAAGCTGCGAGAGACGCTCACATCCGCGTCACGCCGCAACCTCCTCG
ACCAGAGGCTTGACCTGCTGGCCAATGGGCAAACCGACTCTGTGTTGGTG
AGGGAAAGTAGAGAGGCAGGCAACGGGAGGTTGCGTGCCAAAAATAGGGG
AAAGGGGGCTCCAAAACTTAAGTCATTTGGCTCGGAGAACTGCAGCATTG
TCGTAGGTGGCACCCAAGTACACATACCTTGGCCACGACCCCATGGGTAC
ACCTACCCGACCTCTCCCCTTTGAGGATTGTCTCGGGTGGGTAAATGATG
TAGTCCTTCTGCAATAAGGTTCTAGAAAGTGTACCGAAAAAGGAGCTGCG
AAATACTTGTCGCAATGAAGATGAAGGCATGGACCAAGGTTGGATTTCGA
CGGAGCGGCCCCGGTCTGTTGAATGAAGGGGTGACCTCGGCTCTACAGCA
CAGATGGTTGATGGAGAAGAGTAGACTGGTGAAACGAGGATTTTACGTCA
ATGAGATGAGTAAAACCCTGACACTTCCAATTCAAAGCAAAACAGCCCTT
AGCCATCGCTGCCACTGCTCCTAAGCTTGTTGCGTTTGCGTGCGCATCAT
GTGTACATCAGCAGCAGTGAAGCGCAACAGTAAATGTAGTCTAGACTAAT
AGTAGCCGCAGTATCGCGAACCACCTTGCGTGGTTACCATCGTGACCTTG
TGCCCTACCGCATGAAACAGGGGTTTCTCAGAGTGGAGTTTCGCATGTCT
AAGGCAAACATTCGCTCTTTGATATCGAGGCACCCGCAACTCCTCTTCAT
GCCTCGACAGCAAGCGGTGGATCGATGTTCCTGGCTGGTGAGTTTGGTTG
TCCAACCACGATATTCAAGATGATACCAACTACAACGTACGTGTTGCTTG
TACAATGCCACACCCGAGTTGTCGCAGGAAGACAACGCAAGTTCGAGATC
TGGCTTAAACCCTTTGTCAGATCTCCCCCTTTCCGTGCAGCTTCTCAAAA
GATATGCGCGTACGATTCGAGCGTATGCTAAGGCTACCGACATGCCCTTT
GAAACCTCTCGCTGCGCTTTTTCGAAAGTCATCGCTACATCCCGAACAAC
GGATTTCTGCCAGCTGCCGCTCTCAACACGTACGGTGTCCGCATGTTTGA
AATCGTTTCGCGCGCAAGTCGGAGAATCTCAGCCTCAGCAAGAAGAAACT
CGTGAAGATGCTGCTAAAGTTCCCCAGGTTGTTTGGGTATAGCGAGAAGG
GGAGCTACGCTCCCCTGGTAGATTGGTTCAGATCATACCTGGGGATGGAC
ACTCGGGAGGTAAGCGCCATTGCTGCCCTTTTTTTCCCATGAGAAAAGGA
GAGTGGAGATACGGCAAGGAGCTAGAGGTTGCGGCAGAGTGGTGCACAAC
GTTCATCGAGCGATTGCCCTGACACTGATTAGGCAGTGTCGTTCGGTCTG
AGGCTAGCCCCGAACCAGAAACGAACAGTCACCCACCGTTTCTTGTTGAC
ATGGAGAGCACCAATGGTTGCCGGGCAACGAGTGCTGCGGAGCATCAGCA
GTCTCGGTGCGTGCACCTCGAGTGTACGCTGTGTCGCCCATTTGGTGATG
TCGCCCGGTGACGGTACCAGCGGCAACAGATTGCCAATGTGTACGCCCGG
GGTCGTTCGGTTGGAATCTGTTGATAGAAATATCGTGAACGAGCTAGTGA
ATCTCGCACCCATATTTGAAAGGCGCGACACAGATGCTGTCGCTACATGC
CTTCACTCAATACGTTAATTCAGATTTTGCCCAAAAAAACGGTGGTTTGC
TGCAATTCAGCACCCTCGTTGACAGCCGTCTCGCACGAATGACTCGAGGT
TCTGCAGCAATCACCATCCCATGCCCGGAACTATTGCGCGGTGTTGTTTC
GCACTTTGTTTACAGGTGGCGCGGTTGGTGGTCCGACTACCGCAGCTTTT
CAGCTTCAAGCCCGATGAGAACATTGAGGACACGGCTAGGTGCGTTCTGT
GCGCCTGTTGCCAAGGGAGAGCTGTCAAGACTCATCGGTATGCTCTGCTG
TAAATTTGAGCGCCTCCATCTTTGGAGTCATCGACCAATATCCCATGGGC
GTCAGCTTGTGTATTTAACGCATGCTTCTGGGGCAGGCCAGGGCACAATA
GAAAACGAGTCACTGAAACCTGATTCGCCAACAGGATAACTGCAGGCTTA
TTTCTCTCGTCGTGCTAACCACCCAACTGACGCAGGTTTCTGGAGTCGCT
CGGGCTTAGCCGCAAGGAGGTCTGCAAGATGGTGCTTTTACATCCCGAAA
CTTTCAGCTGTGAGTGTTTTGTCGCGACTGGGGGCACTGGATAGTTGGCT
GCCTTTGCTATCTTCCTGCTCGGCAGCGCATCCTTGTTCCGCCAAAGGAC
CGCGTGCTGCTGCTTGTGCTACGCACCAGGGCGAGGTTGTGTTGGTGTTC
GTTGTGCTCAATGTTTCGCAGCATGTCTGGACCAATTCATGACCTTTCGC
CCTCTCGGCAGGCCTGAACAGCAGTGAGGTGTGGGCCGCGTTCGGGAAAT
ACGGCTGCCTCAACCTTGCAACAGCCGCTTGAAACGCGATCTGGGCACAC
CATTAGGCGATGAACTTGGAACGTTCTCGCCCCCCCCCCCCCCCNNNNNN
NNNNNNNTCCCCCCCCCCCCCCCTGACGCAAGCGCGTTTTGTCGTCCTAC
CCTCACACACATCCTTCTTTGGCTGACTTGTGTGCTACAGGCGTCAACCA
AAGCTGCGGTGCTGCTTTCCTCGCCCTTACCACCTTGCTTTGGTTTCGCG
CAGACAGTATCGAAGAGAAAGTAATTCCAATGCTCGAGTGGCTGCAGAAG
GAGCTGAGAGCTTCACCCGACGAGGTGACTGCCTGGTGATCGCTTGGCGT
CGAGCGATAGCTTTGAACCTCTTGATGGGATCATGCTTGCTTTTTTTAGC
AAGAGAGTCCGACGCAATCGGAGAGCAAGATTTTACTCGCGCGCGACGTT
TCTGTTTGTGCAGGGGGCACCGCAGGTCGAGATTGTGACGCTCCAAAGTA
CATAAACGATTCAGAAGCGTGGCCCATGGCAGTTCCCGCGTTGTTTTGCA
TGACCCCACGCCTGCTGCGGTGTGTTTGCAGGCGTTGCCCCTCCCGACTC
CTTGTGTGTACTTCATGATGGGAAAATGACGACGTTGCGCCTCCGAAGCA
TGGGTGACTGGTGGACTCGTCATCTGGTAAACACTCACTCTTGTCTTGTA
CCTCTAGGGGTGTTCTAAACTCTCCGAGGGTGTTACAAACAAGAACCTCA
GGCCCCCCTTTGAGCTCTCATCCTCGTCAGTCACATGGCATTGTGTGGTT
CCTCCCGTCAGGTGATACAAATGGTCGCCAGATATCCCAGCCTCTTAGGA
TGCAGCCAAACGAAGAATCTGGCGCCGAAGTTCTGCTTCTTCCGGACGAC
CCTGAAGGCATCGGTTGCCGACATTCGAGCGGCCGTGGTGGCCACACCGA
GCCTCCTTGGCTACAGCCTCGACTATCGCATCTGCCCGAGGGCGACGCTG
ATGGTTGAGAGAGGCATCGTTCCCGACTTCGGCGAGCACAGGTGGCTCTT
GACCACGGCCTCAGAAGAAAACTTTGAGCAGTGGATGAAGGCCAACAGCG
GCACAAGACGGCTGTAAACTACGTCGAGGTTGAAGCTGGGACAGAAGGGT
AAAGAGTGAGCAGGCTTCGAGGAGCAGTGTTACCGGGCCTGTGCTCGCTG
TTGATAACCTCGGTTGGGGTGATCGGTTTGCCCTATCGTCGAGAACAAGA
TGACGACGGGTTCGGAGAAGATTCGCGGCCGGGCGCCCAGAATCGAGCTA
CGTGAGCATGGCTGGCCGAACGCTCGTGCTGTGTACAGGCGGGCGGGGAA
ACGCGCACTAAACAGACTTAAGGAACTTATCAGTCCCCGCCTTGAAGGTC
GCCCTTATTTCGTCAGAAATATGCTCAAGACTGTAAGTAAACGCCGTCAA
AGAAACGGACGAGTGACT back to topCoding sequence (CDS) from alignment at Scaffold_372:280675..285092- >EsuBft102_6a-0001 ID=EsuBft102_6a-0001|Name=EsuBft102_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1263bp|location=Sequence derived from alignment at Scaffold_372:280675..285092- (Ectocarpus subulatus male Bft15b)
ATGCCAGTGCCAGAGCACAGCAGCATCGCCATGAATGACAAGATATGCGT
TTCGAAGACCATGCTATTGCTGCTGTTTGTCAGCATCGACGGCGGCAGGC
TGTCGAAGATACACGCCGTGGATGCATTTGTCCCACCAAGGCCAGTATCG
TATTCAACAGGTCGAGGGATTTTGGATAGTCGCTGCAGGAATCGACCTCG
GTGGCTGCAGCAGTTGAACCTACCATTAAGGCTGTTGCAGGATGATCTCC
TGTTGTCACGTTCTAGCCCCGGCAAGAAGAGCAGCTTGTCCATGGGGGGT
AAAGGAACGGATCTCGGGGCCTTGCCTTGGAAGACCGACTCGCGGAGCGT
CAGGGAATGGCTGGGCCTCTCTGAACGGGAGATAGACAAGCTGCGAGAGA
CGCTCACATCCGCGTCACGCCGCAACCTCCTCGACCAGAGGCTTGACCTG
CTGGCCAATGGGCAAACCGACTCTGTGTTGGGGTTTCTCAGAGTGGAGTT
TCGCATGTCTAAGGCAAACATTCGCTCTTTGATATCGAGGCACCCGCAAC
TCCTCTTCATGCCTCGACAGCAAGCGGTGGATCGATGTTCCTGGCTGTCG
GAGAATCTCAGCCTCAGCAAGAAGAAACTCGTGAAGATGCTGCTAAAGTT
CCCCAGGTTGTTTGGGTATAGCGAGAAGGGGAGCTACGCTCCCCTGGTAG
ATTGGTTCAGATCATACCTGGGGATGGACACTCGGGAGGTGGCGCGGTTG
GTGGTCCGACTACCGCAGCTTTTCAGCTTCAAGCCCGATGAGAACATTGA
GGACACGGCTAGGTTTCTGGAGTCGCTCGGGCTTAGCCGCAAGGAGGTCT
GCAAGATGGTGCTTTTACATCCCGAAACTTTCAGCTACAGTATCGAAGAG
AAAGTAATTCCAATGCTCGAGTGGCTGCAGAAGGAGCTGAGAGCTTCACC
CGACGAGGTGATACAAATGGTCGCCAGATATCCCAGCCTCTTAGGATGCA
GCCAAACGAAGAATCTGGCGCCGAAGTTCTGCTTCTTCCGGACGACCCTG
AAGGCATCGGTTGCCGACATTCGAGCGGCCGTGGTGGCCACACCGAGCCT
CCTTGGCTACAGCCTCGACTATCGCATCTGCCCGAGGGCGACGCTGATGG
TTGAGAGAGGCATCGTTCCCGACTTCGGCGAGCACAGGTGGCTCTTGACC
ACGGCCTCAGAAGAAAACTTTGAGCAGTGGATGAAGGCCAACAGCGGCAC
AAGACGGCTGTAA back to top
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