EsuBft102_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft102_6a-0001
Unique NameEsuBft102_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_372contigScaffold_372:280675..285092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLI6
ProteomeIdEsuBft102_6
Protein domainsCoil
Protein domainsIPR003690
Protein domainsPTHR13068
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length163
Hectar predicted targeting categoryother localisation
Evalue4.69e-139
EggNOG OGsKOG1267@1|root,KOG1267@2759|Eukaryota
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-22_001100.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K15032
Descriptiontermination of mitochondrial transcription
COG categoryS
BRITEko00000,ko03012,ko03029
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0005739
GO0003690
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft102_6aEsuBft102_6aEctocarpus subulatus male Bft15bgeneScaffold_372 280675..285092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_6a-0001EsuBft102_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_372 281026..285075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_6a-0001-exonagat-exon-4534Ectocarpus subulatus male Bft15bexonScaffold_372 280675..281331 -
EsuBft102_6a-0001-exonagat-exon-4537Ectocarpus subulatus male Bft15bexonScaffold_372 281819..281889 -
EsuBft102_6a-0001-exonEsuBft102_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_372 282384..282457 -
EsuBft102_6a-0001-exonagat-exon-4535Ectocarpus subulatus male Bft15bexonScaffold_372 282704..282777 -
EsuBft102_6a-0001-exonagat-exon-4533Ectocarpus subulatus male Bft15bexonScaffold_372 283384..283524 -
EsuBft102_6a-0001-exonagat-exon-4538Ectocarpus subulatus male Bft15bexonScaffold_372 283856..283972 -
EsuBft102_6a-0001-exonagat-exon-4536Ectocarpus subulatus male Bft15bexonScaffold_372 284596..285092 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_6a-0001-exonagat-three_prime_utr-295Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_372 280675..281025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_6a-0001-cdsEsuBft102_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_372 281026..281331 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft102_6a-0001-exonagat-five_prime_utr-180Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_372 285076..285092 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft102_6a-0001 ID=EsuBft102_6a-0001|Name=EsuBft102_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1631bp|location=Sequence derived from alignment at Scaffold_372:280675..285092- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCGTGCACAGCAGCAAATGCCAGTGCCAGAGCACAGCAGCATCGCCATG
AATGACAAGATATGCGTTTCGAAGACCATGCTATTGCTGCTGTTTGTCAG
CATCGACGGCGGCAGGCTGTCGAAGATACACGCCGTGGATGCATTTGTCC
CACCAAGGCCAGTATCGTATTCAACAGGTCGAGGGATTTTGGATAGTCGC
TGCAGGAATCGACCTCGGTGGCTGCAGCAGTTGAACCTACCATTAAGGCT
GTTGCAGGATGATCTCCTGTTGTCACGTTCTAGCCCCGGCAAGAAGAGCA
GCTTGTCCATGGGGGGTAAAGGAACGGATCTCGGGGCCTTGCCTTGGAAG
ACCGACTCGCGGAGCGTCAGGGAATGGCTGGGCCTCTCTGAACGGGAGAT
AGACAAGCTGCGAGAGACGCTCACATCCGCGTCACGCCGCAACCTCCTCG
ACCAGAGGCTTGACCTGCTGGCCAATGGGCAAACCGACTCTGTGTTGGGG
TTTCTCAGAGTGGAGTTTCGCATGTCTAAGGCAAACATTCGCTCTTTGAT
ATCGAGGCACCCGCAACTCCTCTTCATGCCTCGACAGCAAGCGGTGGATC
GATGTTCCTGGCTGTCGGAGAATCTCAGCCTCAGCAAGAAGAAACTCGTG
AAGATGCTGCTAAAGTTCCCCAGGTTGTTTGGGTATAGCGAGAAGGGGAG
CTACGCTCCCCTGGTAGATTGGTTCAGATCATACCTGGGGATGGACACTC
GGGAGGTGGCGCGGTTGGTGGTCCGACTACCGCAGCTTTTCAGCTTCAAG
CCCGATGAGAACATTGAGGACACGGCTAGGTTTCTGGAGTCGCTCGGGCT
TAGCCGCAAGGAGGTCTGCAAGATGGTGCTTTTACATCCCGAAACTTTCA
GCTACAGTATCGAAGAGAAAGTAATTCCAATGCTCGAGTGGCTGCAGAAG
GAGCTGAGAGCTTCACCCGACGAGGTGATACAAATGGTCGCCAGATATCC
CAGCCTCTTAGGATGCAGCCAAACGAAGAATCTGGCGCCGAAGTTCTGCT
TCTTCCGGACGACCCTGAAGGCATCGGTTGCCGACATTCGAGCGGCCGTG
GTGGCCACACCGAGCCTCCTTGGCTACAGCCTCGACTATCGCATCTGCCC
GAGGGCGACGCTGATGGTTGAGAGAGGCATCGTTCCCGACTTCGGCGAGC
ACAGGTGGCTCTTGACCACGGCCTCAGAAGAAAACTTTGAGCAGTGGATG
AAGGCCAACAGCGGCACAAGACGGCTGTAAACTACGTCGAGGTTGAAGCT
GGGACAGAAGGGTAAAGAGTGAGCAGGCTTCGAGGAGCAGTGTTACCGGG
CCTGTGCTCGCTGTTGATAACCTCGGTTGGGGTGATCGGTTTGCCCTATC
GTCGAGAACAAGATGACGACGGGTTCGGAGAAGATTCGCGGCCGGGCGCC
CAGAATCGAGCTACGTGAGCATGGCTGGCCGAACGCTCGTGCTGTGTACA
GGCGGGCGGGGAAACGCGCACTAAACAGACTTAAGGAACTTATCAGTCCC
CGCCTTGAAGGTCGCCCTTATTTCGTCAGAAATATGCTCAAGACTGTAAG
TAAACGCCGTCAAAGAAACGGACGAGTGACT
back to top

protein sequence of EsuBft102_6a-0001

>EsuBft102_6 ID=EsuBft102_6|Name=EsuBft102_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=420bp
MPVPEHSSIAMNDKICVSKTMLLLLFVSIDGGRLSKIHAVDAFVPPRPVS
YSTGRGILDSRCRNRPRWLQQLNLPLRLLQDDLLLSRSSPGKKSSLSMGG
KGTDLGALPWKTDSRSVREWLGLSEREIDKLRETLTSASRRNLLDQRLDL
LANGQTDSVLGFLRVEFRMSKANIRSLISRHPQLLFMPRQQAVDRCSWLS
ENLSLSKKKLVKMLLKFPRLFGYSEKGSYAPLVDWFRSYLGMDTREVARL
VVRLPQLFSFKPDENIEDTARFLESLGLSRKEVCKMVLLHPETFSYSIEE
KVIPMLEWLQKELRASPDEVIQMVARYPSLLGCSQTKNLAPKFCFFRTTL
KASVADIRAAVVATPSLLGYSLDYRICPRATLMVERGIVPDFGEHRWLLT
TASEENFEQWMKANSGTRRL
back to top

mRNA from alignment at Scaffold_372:280675..285092-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft102_6a-0001 ID=EsuBft102_6a-0001|Name=EsuBft102_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4418bp|location=Sequence derived from alignment at Scaffold_372:280675..285092- (Ectocarpus subulatus male Bft15b)
CCCGTGCACAGCAGCAAATGCCAGTGCCAGAGCACAGCAGCATCGCCATG
AATGACAAGATATGCGTTTCGAAGACCATGCTATTGCTGCTGTTTGTCAG
CATCGACGGCGGCAGGCTGTCGAAGATACACGCCGTGGATGCATTTGTCC
CACCAAGGCCAGTATCGTATTCAACAGGTCGAGGGATTTTGGATAGTCGC
TGCAGGAATCGACCTCGGTGGCTGCAGCAGTTGAACCTACCATTAAGGCT
GTTGCAGGATGATCTCCTGTTGTCACGTTCTAGCCCCGGCAAGAAGAGCA
GCTTGTCCATGGGGGGTAAAGGAACGGATCTCGGGGCCTTGCCTTGGAAG
ACCGACTCGCGGAGCGTCAGGGAATGGCTGGGCCTCTCTGAACGGGAGAT
AGACAAGCTGCGAGAGACGCTCACATCCGCGTCACGCCGCAACCTCCTCG
ACCAGAGGCTTGACCTGCTGGCCAATGGGCAAACCGACTCTGTGTTGGTG
AGGGAAAGTAGAGAGGCAGGCAACGGGAGGTTGCGTGCCAAAAATAGGGG
AAAGGGGGCTCCAAAACTTAAGTCATTTGGCTCGGAGAACTGCAGCATTG
TCGTAGGTGGCACCCAAGTACACATACCTTGGCCACGACCCCATGGGTAC
ACCTACCCGACCTCTCCCCTTTGAGGATTGTCTCGGGTGGGTAAATGATG
TAGTCCTTCTGCAATAAGGTTCTAGAAAGTGTACCGAAAAAGGAGCTGCG
AAATACTTGTCGCAATGAAGATGAAGGCATGGACCAAGGTTGGATTTCGA
CGGAGCGGCCCCGGTCTGTTGAATGAAGGGGTGACCTCGGCTCTACAGCA
CAGATGGTTGATGGAGAAGAGTAGACTGGTGAAACGAGGATTTTACGTCA
ATGAGATGAGTAAAACCCTGACACTTCCAATTCAAAGCAAAACAGCCCTT
AGCCATCGCTGCCACTGCTCCTAAGCTTGTTGCGTTTGCGTGCGCATCAT
GTGTACATCAGCAGCAGTGAAGCGCAACAGTAAATGTAGTCTAGACTAAT
AGTAGCCGCAGTATCGCGAACCACCTTGCGTGGTTACCATCGTGACCTTG
TGCCCTACCGCATGAAACAGGGGTTTCTCAGAGTGGAGTTTCGCATGTCT
AAGGCAAACATTCGCTCTTTGATATCGAGGCACCCGCAACTCCTCTTCAT
GCCTCGACAGCAAGCGGTGGATCGATGTTCCTGGCTGGTGAGTTTGGTTG
TCCAACCACGATATTCAAGATGATACCAACTACAACGTACGTGTTGCTTG
TACAATGCCACACCCGAGTTGTCGCAGGAAGACAACGCAAGTTCGAGATC
TGGCTTAAACCCTTTGTCAGATCTCCCCCTTTCCGTGCAGCTTCTCAAAA
GATATGCGCGTACGATTCGAGCGTATGCTAAGGCTACCGACATGCCCTTT
GAAACCTCTCGCTGCGCTTTTTCGAAAGTCATCGCTACATCCCGAACAAC
GGATTTCTGCCAGCTGCCGCTCTCAACACGTACGGTGTCCGCATGTTTGA
AATCGTTTCGCGCGCAAGTCGGAGAATCTCAGCCTCAGCAAGAAGAAACT
CGTGAAGATGCTGCTAAAGTTCCCCAGGTTGTTTGGGTATAGCGAGAAGG
GGAGCTACGCTCCCCTGGTAGATTGGTTCAGATCATACCTGGGGATGGAC
ACTCGGGAGGTAAGCGCCATTGCTGCCCTTTTTTTCCCATGAGAAAAGGA
GAGTGGAGATACGGCAAGGAGCTAGAGGTTGCGGCAGAGTGGTGCACAAC
GTTCATCGAGCGATTGCCCTGACACTGATTAGGCAGTGTCGTTCGGTCTG
AGGCTAGCCCCGAACCAGAAACGAACAGTCACCCACCGTTTCTTGTTGAC
ATGGAGAGCACCAATGGTTGCCGGGCAACGAGTGCTGCGGAGCATCAGCA
GTCTCGGTGCGTGCACCTCGAGTGTACGCTGTGTCGCCCATTTGGTGATG
TCGCCCGGTGACGGTACCAGCGGCAACAGATTGCCAATGTGTACGCCCGG
GGTCGTTCGGTTGGAATCTGTTGATAGAAATATCGTGAACGAGCTAGTGA
ATCTCGCACCCATATTTGAAAGGCGCGACACAGATGCTGTCGCTACATGC
CTTCACTCAATACGTTAATTCAGATTTTGCCCAAAAAAACGGTGGTTTGC
TGCAATTCAGCACCCTCGTTGACAGCCGTCTCGCACGAATGACTCGAGGT
TCTGCAGCAATCACCATCCCATGCCCGGAACTATTGCGCGGTGTTGTTTC
GCACTTTGTTTACAGGTGGCGCGGTTGGTGGTCCGACTACCGCAGCTTTT
CAGCTTCAAGCCCGATGAGAACATTGAGGACACGGCTAGGTGCGTTCTGT
GCGCCTGTTGCCAAGGGAGAGCTGTCAAGACTCATCGGTATGCTCTGCTG
TAAATTTGAGCGCCTCCATCTTTGGAGTCATCGACCAATATCCCATGGGC
GTCAGCTTGTGTATTTAACGCATGCTTCTGGGGCAGGCCAGGGCACAATA
GAAAACGAGTCACTGAAACCTGATTCGCCAACAGGATAACTGCAGGCTTA
TTTCTCTCGTCGTGCTAACCACCCAACTGACGCAGGTTTCTGGAGTCGCT
CGGGCTTAGCCGCAAGGAGGTCTGCAAGATGGTGCTTTTACATCCCGAAA
CTTTCAGCTGTGAGTGTTTTGTCGCGACTGGGGGCACTGGATAGTTGGCT
GCCTTTGCTATCTTCCTGCTCGGCAGCGCATCCTTGTTCCGCCAAAGGAC
CGCGTGCTGCTGCTTGTGCTACGCACCAGGGCGAGGTTGTGTTGGTGTTC
GTTGTGCTCAATGTTTCGCAGCATGTCTGGACCAATTCATGACCTTTCGC
CCTCTCGGCAGGCCTGAACAGCAGTGAGGTGTGGGCCGCGTTCGGGAAAT
ACGGCTGCCTCAACCTTGCAACAGCCGCTTGAAACGCGATCTGGGCACAC
CATTAGGCGATGAACTTGGAACGTTCTCGCCCCCCCCCCCCCCCNNNNNN
NNNNNNNTCCCCCCCCCCCCCCCTGACGCAAGCGCGTTTTGTCGTCCTAC
CCTCACACACATCCTTCTTTGGCTGACTTGTGTGCTACAGGCGTCAACCA
AAGCTGCGGTGCTGCTTTCCTCGCCCTTACCACCTTGCTTTGGTTTCGCG
CAGACAGTATCGAAGAGAAAGTAATTCCAATGCTCGAGTGGCTGCAGAAG
GAGCTGAGAGCTTCACCCGACGAGGTGACTGCCTGGTGATCGCTTGGCGT
CGAGCGATAGCTTTGAACCTCTTGATGGGATCATGCTTGCTTTTTTTAGC
AAGAGAGTCCGACGCAATCGGAGAGCAAGATTTTACTCGCGCGCGACGTT
TCTGTTTGTGCAGGGGGCACCGCAGGTCGAGATTGTGACGCTCCAAAGTA
CATAAACGATTCAGAAGCGTGGCCCATGGCAGTTCCCGCGTTGTTTTGCA
TGACCCCACGCCTGCTGCGGTGTGTTTGCAGGCGTTGCCCCTCCCGACTC
CTTGTGTGTACTTCATGATGGGAAAATGACGACGTTGCGCCTCCGAAGCA
TGGGTGACTGGTGGACTCGTCATCTGGTAAACACTCACTCTTGTCTTGTA
CCTCTAGGGGTGTTCTAAACTCTCCGAGGGTGTTACAAACAAGAACCTCA
GGCCCCCCTTTGAGCTCTCATCCTCGTCAGTCACATGGCATTGTGTGGTT
CCTCCCGTCAGGTGATACAAATGGTCGCCAGATATCCCAGCCTCTTAGGA
TGCAGCCAAACGAAGAATCTGGCGCCGAAGTTCTGCTTCTTCCGGACGAC
CCTGAAGGCATCGGTTGCCGACATTCGAGCGGCCGTGGTGGCCACACCGA
GCCTCCTTGGCTACAGCCTCGACTATCGCATCTGCCCGAGGGCGACGCTG
ATGGTTGAGAGAGGCATCGTTCCCGACTTCGGCGAGCACAGGTGGCTCTT
GACCACGGCCTCAGAAGAAAACTTTGAGCAGTGGATGAAGGCCAACAGCG
GCACAAGACGGCTGTAAACTACGTCGAGGTTGAAGCTGGGACAGAAGGGT
AAAGAGTGAGCAGGCTTCGAGGAGCAGTGTTACCGGGCCTGTGCTCGCTG
TTGATAACCTCGGTTGGGGTGATCGGTTTGCCCTATCGTCGAGAACAAGA
TGACGACGGGTTCGGAGAAGATTCGCGGCCGGGCGCCCAGAATCGAGCTA
CGTGAGCATGGCTGGCCGAACGCTCGTGCTGTGTACAGGCGGGCGGGGAA
ACGCGCACTAAACAGACTTAAGGAACTTATCAGTCCCCGCCTTGAAGGTC
GCCCTTATTTCGTCAGAAATATGCTCAAGACTGTAAGTAAACGCCGTCAA
AGAAACGGACGAGTGACT
back to top

Coding sequence (CDS) from alignment at Scaffold_372:280675..285092-

>EsuBft102_6a-0001 ID=EsuBft102_6a-0001|Name=EsuBft102_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1263bp|location=Sequence derived from alignment at Scaffold_372:280675..285092- (Ectocarpus subulatus male Bft15b)
ATGCCAGTGCCAGAGCACAGCAGCATCGCCATGAATGACAAGATATGCGT
TTCGAAGACCATGCTATTGCTGCTGTTTGTCAGCATCGACGGCGGCAGGC
TGTCGAAGATACACGCCGTGGATGCATTTGTCCCACCAAGGCCAGTATCG
TATTCAACAGGTCGAGGGATTTTGGATAGTCGCTGCAGGAATCGACCTCG
GTGGCTGCAGCAGTTGAACCTACCATTAAGGCTGTTGCAGGATGATCTCC
TGTTGTCACGTTCTAGCCCCGGCAAGAAGAGCAGCTTGTCCATGGGGGGT
AAAGGAACGGATCTCGGGGCCTTGCCTTGGAAGACCGACTCGCGGAGCGT
CAGGGAATGGCTGGGCCTCTCTGAACGGGAGATAGACAAGCTGCGAGAGA
CGCTCACATCCGCGTCACGCCGCAACCTCCTCGACCAGAGGCTTGACCTG
CTGGCCAATGGGCAAACCGACTCTGTGTTGGGGTTTCTCAGAGTGGAGTT
TCGCATGTCTAAGGCAAACATTCGCTCTTTGATATCGAGGCACCCGCAAC
TCCTCTTCATGCCTCGACAGCAAGCGGTGGATCGATGTTCCTGGCTGTCG
GAGAATCTCAGCCTCAGCAAGAAGAAACTCGTGAAGATGCTGCTAAAGTT
CCCCAGGTTGTTTGGGTATAGCGAGAAGGGGAGCTACGCTCCCCTGGTAG
ATTGGTTCAGATCATACCTGGGGATGGACACTCGGGAGGTGGCGCGGTTG
GTGGTCCGACTACCGCAGCTTTTCAGCTTCAAGCCCGATGAGAACATTGA
GGACACGGCTAGGTTTCTGGAGTCGCTCGGGCTTAGCCGCAAGGAGGTCT
GCAAGATGGTGCTTTTACATCCCGAAACTTTCAGCTACAGTATCGAAGAG
AAAGTAATTCCAATGCTCGAGTGGCTGCAGAAGGAGCTGAGAGCTTCACC
CGACGAGGTGATACAAATGGTCGCCAGATATCCCAGCCTCTTAGGATGCA
GCCAAACGAAGAATCTGGCGCCGAAGTTCTGCTTCTTCCGGACGACCCTG
AAGGCATCGGTTGCCGACATTCGAGCGGCCGTGGTGGCCACACCGAGCCT
CCTTGGCTACAGCCTCGACTATCGCATCTGCCCGAGGGCGACGCTGATGG
TTGAGAGAGGCATCGTTCCCGACTTCGGCGAGCACAGGTGGCTCTTGACC
ACGGCCTCAGAAGAAAACTTTGAGCAGTGGATGAAGGCCAACAGCGGCAC
AAGACGGCTGTAA
back to top