EsuBft1029_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1029_4a-0001
Unique NameEsuBft1029_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_70contigScaffold_70:312591..317018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FL61
ProteomeIdEsuBft1029_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length93
Hectar predicted targeting categoryother localisation
Evalue4.85e-63
EggNOG OGsKOG2434@1|root,KOG2434@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRRN3
KEGG koko:K15216
GOsGO:0000120,GO:0000182,GO:0000976,GO:0001013,GO:0001042,GO:0001046,GO:0001047,GO:0001067,GO:0001163,GO:0001164,GO:0001167,GO:0001169,GO:0001179,GO:0001181,GO:0001188,GO:0001701,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007028,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009303,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0023051,GO:0023057,GO:0030154,GO:0030718,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036099,GO:0042254,GO:0042592,GO:0042790,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0098781,GO:0120035,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901797,GO:1902253,GO:1902254,GO:1902531,GO:1902532,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000026,GO:2000112,GO:2000142,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Descriptionrna polymerase i-specific transcription initiation factor
COG categoryO
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_4aEsuBft1029_4aEctocarpus subulatus male Bft15bgeneScaffold_70 312591..317018 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_4a-0001-exonEsuBft1029_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_70 312591..313278 -
EsuBft1029_4a-0001-exonagat-exon-26130Ectocarpus subulatus male Bft15bexonScaffold_70 316776..317018 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_4a-0001-exonagat-three_prime_utr-279Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_70 312591..312624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_4a-0001-cdsEsuBft1029_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_70 312625..313278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1029_4a-0001EsuBft1029_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_70 312625..317018 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1029_4a-0001 ID=EsuBft1029_4a-0001|Name=EsuBft1029_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=931bp|location=Sequence derived from alignment at Scaffold_70:312591..317018- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATTTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCACGAGGCTGATGAAGGCTCAAG
ACGATGGCAGCCGACATCAAAGAAGCACCAAATTCTCGGGCGCCAGGACG
CCCGCCGGCGCCGGGGACTCGGACTCCTCTGTCACCAGCGACAGCAGCGA
TGACGAATCTGTTTCGTCCGAAGAAGACGACGACGACGATCGAAATATCA
ACGACATGGACGCGAGCTCCATGAGTTTCCGGTACGGGGCCAGCGGCCTC
CGTGCCCGGTCTCTTGGCGAACGAAAAGAAGCCACCACAAAGAACAGCAA
GGCCAAGGGCAGGCTTGCCAAGAAGCGTAACGACGCGGGTGAGAGTTCCG
AAGGTGCTTCTTCTTCGTCGGAGGAAGAGGGGGATGATGAGGCAGGCCGC
ATGTCGAGAAAAATGGCCGACACGTACATCACGGAGAGCATGTCCGTCAC
CCCTGCGAGCTCCGTCGCCGTGGGGAGCCTCATGGGCAGGAGCCTGGGTC
AGGCCATGTCCTCGTCGTTTGCCGACGATGGTCTCGTGTGGGGGACGGGC
GCCGGGGGCGCGGCCGGAACTCCCGACGATGCGTTTTTCCACGAGAACGT
GTCGCCATGCCCGTCGCCCCCGTTGGCGGAGGCGGCTATCAGCGGCCGCT
CTAGACCGTTAGACATCGGCGTGCCTTCAAAGAGGACTTTGTTTTGAATG
GCTTGTGGCGGCGATGGGTGTCCCCTTGGAT
back to top

protein sequence of EsuBft1029_4a-0001

>EsuBft1029_4 ID=EsuBft1029_4|Name=EsuBft1029_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGV
HGVGIAIKETMWESVGEEGRTVECISTRLMKAQDDGSRHQRSTKFSGART
PAGAGDSDSSVTSDSSDDESVSSEEDDDDDRNINDMDASSMSFRYGASGL
RARSLGERKEATTKNSKAKGRLAKKRNDAGESSEGASSSSEEEGDDEAGR
MSRKMADTYITESMSVTPASSVAVGSLMGRSLGQAMSSSFADDGLVWGTG
AGGAAGTPDDAFFHENVSPCPSPPLAEAAISGRSRPLDIGVPSKRTLF
back to top

mRNA from alignment at Scaffold_70:312591..317018-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1029_4a-0001 ID=EsuBft1029_4a-0001|Name=EsuBft1029_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4428bp|location=Sequence derived from alignment at Scaffold_70:312591..317018- (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATTTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCACGAGGCTGATGAAGGTTCGTC
TACAAATTGGCCGGCGAGTAACTTTCGTGGTGGGGTACGCCCCCACGGAA
ACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGGGCACTGCT
GTAGAAGCGAGTAGGGCGGCCGAGGCAGCGCTTGTGGCGAACTATGTACC
CGGCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCCGTATGCTATACTCC
TTTGTGTGTATCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCCTTT
TTCATGACCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGAGCTCGCTT
TGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCNNNNNNNN
NNNNNNTTTTTTCGGCGGGTGTGGGAAGCGTCCTCCTTTATTTTTCTGTT
ATTTTTGTTTTGTTTTATTTTGATCGGTGTCCGAGGGCTCTTTTCTGGAA
CGGTCGGTGCGATACCTGTTCTTTTCTTTCTATCATTTTGTTTTCTTTTT
CCGAGTGGTTTGTACCCTTTTTTTTTTTTCTCGCGGCGTCGTATGTGCCG
GGTTTTGAGACCACGGGCTCCCCATTTTTGTGGACTTAAGAGCTAATGTG
AGAAACAACAACAACAACAACAACAACAACGTTACCACAGAGAATATTCA
ACTCAGAAACGCTTCTGTCGACCGCGCTTGCGCCACAACCCAACACAACC
GGCACGTTCAACACCCAAGCGCATAAAGCCCGTTTCCAACTTACAATGAA
CAGACACCCAACGCCCCAAACATGATGTTAATGGCGACAGGCTCAAGACG
ATGGCAGCCGACATCAAAGAAGCACCAAATTCTCGGGCGCCAGGACGCCC
GCCGGCGCCGGGGACTCGGACTCCTCTGTCACCAGCGACAGCAGCGATGA
CGAATCTGTTTCGTCCGAAGAAGACGACGACGACGATCGAAATATCAACG
ACATGGACGCGAGCTCCATGAGTTTCCGGTACGGGGCCAGCGGCCTCCGT
GCCCGGTCTCTTGGCGAACGAAAAGAAGCCACCACAAAGAACAGCAAGGC
CAAGGGCAGGCTTGCCAAGAAGCGTAACGACGCGGGTGAGAGTTCCGAAG
GTGCTTCTTCTTCGTCGGAGGAAGAGGGGGATGATGAGGCAGGCCGCATG
TCGAGAAAAATGGCCGACACGTACATCACGGAGAGCATGTCCGTCACCCC
TGCGAGCTCCGTCGCCGTGGGGAGCCTCATGGGCAGGAGCCTGGGTCAGG
CCATGTCCTCGTCGTTTGCCGACGATGGTCTCGTGTGGGGGACGGGCGCC
GGGGGCGCGGCCGGAACTCCCGACGATGCGTTTTTCCACGAGAACGTGTC
GCCATGCCCGTCGCCCCCGTTGGCGGAGGCGGCTATCAGCGGCCGCTCTA
GACCGTTAGACATCGGCGTGCCTTCAAAGAGGACTTTGTTTTGAATGGCT
TGTGGCGGCGATGGGTGTCCCCTTGGAT
back to top

Coding sequence (CDS) from alignment at Scaffold_70:312591..317018-

>EsuBft1029_4a-0001 ID=EsuBft1029_4a-0001|Name=EsuBft1029_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_70:312591..317018- (Ectocarpus subulatus male Bft15b)
ATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACT
TCAGGAGACCCGACGAGCGGGGCAAGGTTCAATTGCACACGACGGGTACG
TGATCATTTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTA
CACGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGAGTGTGGGCGA
GGAAGGTAGGACGGTGGAGTGCATTAGCACGAGGCTGATGAAGGCTCAAG
ACGATGGCAGCCGACATCAAAGAAGCACCAAATTCTCGGGCGCCAGGACG
CCCGCCGGCGCCGGGGACTCGGACTCCTCTGTCACCAGCGACAGCAGCGA
TGACGAATCTGTTTCGTCCGAAGAAGACGACGACGACGATCGAAATATCA
ACGACATGGACGCGAGCTCCATGAGTTTCCGGTACGGGGCCAGCGGCCTC
CGTGCCCGGTCTCTTGGCGAACGAAAAGAAGCCACCACAAAGAACAGCAA
GGCCAAGGGCAGGCTTGCCAAGAAGCGTAACGACGCGGGTGAGAGTTCCG
AAGGTGCTTCTTCTTCGTCGGAGGAAGAGGGGGATGATGAGGCAGGCCGC
ATGTCGAGAAAAATGGCCGACACGTACATCACGGAGAGCATGTCCGTCAC
CCCTGCGAGCTCCGTCGCCGTGGGGAGCCTCATGGGCAGGAGCCTGGGTC
AGGCCATGTCCTCGTCGTTTGCCGACGATGGTCTCGTGTGGGGGACGGGC
GCCGGGGGCGCGGCCGGAACTCCCGACGATGCGTTTTTCCACGAGAACGT
GTCGCCATGCCCGTCGCCCCCGTTGGCGGAGGCGGCTATCAGCGGCCGCT
CTAGACCGTTAGACATCGGCGTGCCTTCAAAGAGGACTTTGTTTTGA
back to top