EsuBft1026_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1026_3a-0001
Unique Name	EsuBft1026_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_385	contig	Scaffold_385:220121..221254 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1026_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	113
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_3a	EsuBft1026_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_385 220121..221254 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_3a-0001-exon	EsuBft1026_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 220121..221254 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_3a-0001-cds	EsuBft1026_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_385 220121..221035 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_3a-0001-exon	agat-five_prime_utr-153	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_385 221036..221254 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_3a-0001	EsuBft1026_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_385 220121..221035 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_385:220121..221254-
coding sequence from alignment at Scaffold_385:220121..221254-

spliced messenger RNA

>EsuBft1026_3a-0001 ID=EsuBft1026_3a-0001|Name=EsuBft1026_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1134bp|location=Sequence derived from alignment at Scaffold_385:220121..221254- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCACTTCTGTCCGACATCCCAGTGGGTACACCCACCGGCGTCAACTAATT
TTTTCATGTACCCACTTGTGTCTATTTTTTTACCCACATTTGTCCAAATT
GTACCCACTTGTGTCCACATACGGATGGCGGAAATCGAGCGGAAATTGAC
CTCCACGTCACCGCACGGCAGAACATCGAATAGCCTCGCAACGTCTCAGA
ACCTCCCAACCACGTATCCATGGCATCTTTCGTATCCATGACTGCCGACT
GCGGACCGACCGAGGAGGAACATGTCAGACACATGCCAGGCCCCTCCGGT
ACCGGAACGGGAGGATATCAGGCACAAAAAGATGCCGGCAGTAAGCCCGG
CAAGGAATGCACTATAACAACACACGCCACAAACAAATGCGTGACACACA
ACGGACAACAAAACCAACGGGTCGAACCTACAGGTCGCGCAAACAGAACA
AAACGACGCGCATTGAGCAACAATACTCACACACACGAAAGCATCAACCG
CCACCATGACGAGTGCACACCGACTCGTCACGGCAGCAGTAGGATGTCGA
GGCAGTTTGCTCTGCAGGGCGCTCGCTCAGGGTCAAGCGGGGGTGCACCT
CTGTCAACTGCTGGCGGCGCCATGGTTGAAGAGGCAACTTTTGCGACGTC
ACGTGCCTTCAAACACGCATTCGAGCGCTGCATGATCGCACAGTCTAGGC
AGTGCCGGCTAGACAAGCGGATTATTGGCGGTCGGGGCAAGCTCCACCGC
TGCACGGGAGCAATCGTCAACGGGAAAGCGACATCCGGCTGCCCGGTGCT
TGCGCGGGGGTGCAAGCAAACCGATGGCACCTGGAAGGTGACGGAGGTGG
TCCTCGATCATGTGGCGTGCACCGGCCAGGCCAGTAACAAAAAGCAGCGG
ATCAATCGCCGATGTGTGGAGAGGGAGGCAGCGGCGCTCGTGAGCGCCAA
CCACAGGATCACCTGTCCCTCGCTGGTGAAGACGCTCAAGGCAACCTCCG
GCGTGGATGTCAGCGAGAGGACAGCTAGCAGGATGCGGGCGGACATCCTC
GGCAAGGGAAAGGACGCGATCGCCAAGGAGTACCAACTCCTCCAGAGCTA
CTGCGACCTCCTCGGGAGGGACAACGGCANNNNN

protein sequence of EsuBft1026_3a-0001

>EsuBft1026_3 ID=EsuBft1026_3|Name=EsuBft1026_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=305bp
MASFVSMTADCGPTEEEHVRHMPGPSGTGTGGYQAQKDAGSKPGKECTIT
THATNKCVTHNGQQNQRVEPTGRANRTKRRALSNNTHTHESINRHHDECT
PTRHGSSRMSRQFALQGARSGSSGGAPLSTAGGAMVEEATFATSRAFKHA
FERCMIAQSRQCRLDKRIIGGRGKLHRCTGAIVNGKATSGCPVLARGCKQ
TDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCP
SLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGR
DNGXX

mRNA from alignment at Scaffold_385:220121..221254-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1026_3a-0001 ID=EsuBft1026_3a-0001|Name=EsuBft1026_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1134bp|location=Sequence derived from alignment at Scaffold_385:220121..221254- (Ectocarpus subulatus male Bft15b)
CCACTTCTGTCCGACATCCCAGTGGGTACACCCACCGGCGTCAACTAATT
TTTTCATGTACCCACTTGTGTCTATTTTTTTACCCACATTTGTCCAAATT
GTACCCACTTGTGTCCACATACGGATGGCGGAAATCGAGCGGAAATTGAC
CTCCACGTCACCGCACGGCAGAACATCGAATAGCCTCGCAACGTCTCAGA
ACCTCCCAACCACGTATCCATGGCATCTTTCGTATCCATGACTGCCGACT
GCGGACCGACCGAGGAGGAACATGTCAGACACATGCCAGGCCCCTCCGGT
ACCGGAACGGGAGGATATCAGGCACAAAAAGATGCCGGCAGTAAGCCCGG
CAAGGAATGCACTATAACAACACACGCCACAAACAAATGCGTGACACACA
ACGGACAACAAAACCAACGGGTCGAACCTACAGGTCGCGCAAACAGAACA
AAACGACGCGCATTGAGCAACAATACTCACACACACGAAAGCATCAACCG
CCACCATGACGAGTGCACACCGACTCGTCACGGCAGCAGTAGGATGTCGA
GGCAGTTTGCTCTGCAGGGCGCTCGCTCAGGGTCAAGCGGGGGTGCACCT
CTGTCAACTGCTGGCGGCGCCATGGTTGAAGAGGCAACTTTTGCGACGTC
ACGTGCCTTCAAACACGCATTCGAGCGCTGCATGATCGCACAGTCTAGGC
AGTGCCGGCTAGACAAGCGGATTATTGGCGGTCGGGGCAAGCTCCACCGC
TGCACGGGAGCAATCGTCAACGGGAAAGCGACATCCGGCTGCCCGGTGCT
TGCGCGGGGGTGCAAGCAAACCGATGGCACCTGGAAGGTGACGGAGGTGG
TCCTCGATCATGTGGCGTGCACCGGCCAGGCCAGTAACAAAAAGCAGCGG
ATCAATCGCCGATGTGTGGAGAGGGAGGCAGCGGCGCTCGTGAGCGCCAA
CCACAGGATCACCTGTCCCTCGCTGGTGAAGACGCTCAAGGCAACCTCCG
GCGTGGATGTCAGCGAGAGGACAGCTAGCAGGATGCGGGCGGACATCCTC
GGCAAGGGAAAGGACGCGATCGCCAAGGAGTACCAACTCCTCCAGAGCTA
CTGCGACCTCCTCGGGAGGGACAACGGCANNNNN

Coding sequence (CDS) from alignment at Scaffold_385:220121..221254-

>EsuBft1026_3a-0001 ID=EsuBft1026_3a-0001|Name=EsuBft1026_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=915bp|location=Sequence derived from alignment at Scaffold_385:220121..221254- (Ectocarpus subulatus male Bft15b)
ATGGCATCTTTCGTATCCATGACTGCCGACTGCGGACCGACCGAGGAGGA
ACATGTCAGACACATGCCAGGCCCCTCCGGTACCGGAACGGGAGGATATC
AGGCACAAAAAGATGCCGGCAGTAAGCCCGGCAAGGAATGCACTATAACA
ACACACGCCACAAACAAATGCGTGACACACAACGGACAACAAAACCAACG
GGTCGAACCTACAGGTCGCGCAAACAGAACAAAACGACGCGCATTGAGCA
ACAATACTCACACACACGAAAGCATCAACCGCCACCATGACGAGTGCACA
CCGACTCGTCACGGCAGCAGTAGGATGTCGAGGCAGTTTGCTCTGCAGGG
CGCTCGCTCAGGGTCAAGCGGGGGTGCACCTCTGTCAACTGCTGGCGGCG
CCATGGTTGAAGAGGCAACTTTTGCGACGTCACGTGCCTTCAAACACGCA
TTCGAGCGCTGCATGATCGCACAGTCTAGGCAGTGCCGGCTAGACAAGCG
GATTATTGGCGGTCGGGGCAAGCTCCACCGCTGCACGGGAGCAATCGTCA
ACGGGAAAGCGACATCCGGCTGCCCGGTGCTTGCGCGGGGGTGCAAGCAA
ACCGATGGCACCTGGAAGGTGACGGAGGTGGTCCTCGATCATGTGGCGTG
CACCGGCCAGGCCAGTAACAAAAAGCAGCGGATCAATCGCCGATGTGTGG
AGAGGGAGGCAGCGGCGCTCGTGAGCGCCAACCACAGGATCACCTGTCCC
TCGCTGGTGAAGACGCTCAAGGCAACCTCCGGCGTGGATGTCAGCGAGAG
GACAGCTAGCAGGATGCGGGCGGACATCCTCGGCAAGGGAAAGGACGCGA
TCGCCAAGGAGTACCAACTCCTCCAGAGCTACTGCGACCTCCTCGGGAGG
GACAACGGCANNNNN