EsuBft1025_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1025_7a-0001
Unique NameEsuBft1025_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:91939..93782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1025_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length116
Hectar predicted targeting categoryother localisation
Evalue1.01e-208
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_7aEsuBft1025_7aEctocarpus subulatus male Bft15bgeneScaffold_38 91939..93782 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_7a-0001-exonagat-exon-77454Ectocarpus subulatus male Bft15bexonScaffold_38 91939..91956 -
EsuBft1025_7a-0001-exonEsuBft1025_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 92343..93392 -
EsuBft1025_7a-0001-exonagat-exon-77453Ectocarpus subulatus male Bft15bexonScaffold_38 93686..93782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_7a-0001-cdsEsuBft1025_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 91939..91956 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_7a-0001-exonagat-five_prime_utr-152Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_38 93743..93782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_7a-0001EsuBft1025_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 91939..93742 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1025_7a-0001 ID=EsuBft1025_7a-0001|Name=EsuBft1025_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1165bp|location=Sequence derived from alignment at Scaffold_38:91939..93782- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACGTGGATATACTCCAAGGAGTCGCACAGGGCTGTACGATGTCACCCA
CTCTTTTCAAGATTTACATCAACGACTTGATAAGGACGGTTGAAGCAACA
GGTATACATACGTACCTGGGAGTAGAGATTTCGAAGGAGTGCTCATGGGA
CGCACACATAGCAAAGTTGATTGGGAAGGGTAAAGCTCAGATAGGCAAGA
TGGACGAGATCCTTACGGAACCACACCTAGACACTAGGATTAAGAGGTGT
GTTCTCTTGAATGTGATTGTACCTAAGCTAGAGTATGCAGGAGAGGTATG
GGAAGGTAACGAAAAGGCCGTCAAGCAGCTGGAAACGGTGCAGATGGCAG
CGGCCAAGAAAATACTAGGATGTTCAAGTACAACGAGCAACACTGTATTG
AGAGCAGAACTGGGAATGTACTCTCTTAAAACAAAGAGAGACATGCAAAA
GTTGAATTGGCAGTACAAGGTAAGTAGTATGTCGGACGATAGACTACCAG
CCATGGTTGACAAGGCAGCTTGGGGAAAAGCGACTCCAGGGAAGAAAGGA
ATCAGATGGGACAAGGTGGTAGAGAGGGTTTGGAAGGAGATAGGAAACGA
GGAGGAGACATTGGACACGGAAGGGTTCGGGGGGTCCAAGAAGAAAGTCA
AGGAGATGCTTGAAAGTAGGGAGGAGACAACCCTTCGGAAGAAGGTACGA
AGCGAAGACCACTTGGAGATATACGGGAAGTTGAAAGAAGGGATAGGGAT
GAAAAGTTACTTGGAAGGCCCCATGGACTACGCAAAAAAACTGAAGTTGC
AATTTCGAGTAGGCGATCTGGACTTGCCAGAACGGAGGAAGAGGTACAGC
AGCCGTAGGAGAGAGGAAGAGGAGGATAGACAGACATGTCCATGTGGCAA
ATCGGAGGAGAGTAGACCCCACATAGTTGGGGAGTGTGAGCTGTACAGGA
AGGAAAGAGAGGATCTCGAGGAGGACATGAGACAGAGAGGGTGTGACATG
GACAAGTTTGGTAAATTAGACAACAGCGAACAAACGATCGTTGTAATTGG
GGATAGATGGTGGGCACAAGAGACCGTAGAGGACGGGGATAAGATGTGCA
AGAAATTTTTATGTAGTTTGTGGCAGAAACGTAAAGAGCTCCCAAATGAC
CAGTACGGACATTAG
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protein sequence of EsuBft1025_7a-0001

>EsuBft1025_7 ID=EsuBft1025_7|Name=EsuBft1025_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=374bp
MSPTLFKIYINDLIRTVEATGIHTYLGVEISKECSWDAHIAKLIGKGKAQ
IGKMDEILTEPHLDTRIKRCVLLNVIVPKLEYAGEVWEGNEKAVKQLETV
QMAAAKKILGCSSTTSNTVLRAELGMYSLKTKRDMQKLNWQYKVSSMSDD
RLPAMVDKAAWGKATPGKKGIRWDKVVERVWKEIGNEEETLDTEGFGGSK
KKVKEMLESREETTLRKKVRSEDHLEIYGKLKEGIGMKSYLEGPMDYAKK
LKLQFRVGDLDLPERRKRYSSRRREEEEDRQTCPCGKSEESRPHIVGECE
LYRKEREDLEEDMRQRGCDMDKFGKLDNSEQTIVVIGDRWWAQETVEDGD
KMCKKFLCSLWQKRKELPNDQYGH
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mRNA from alignment at Scaffold_38:91939..93782-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1025_7a-0001 ID=EsuBft1025_7a-0001|Name=EsuBft1025_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1844bp|location=Sequence derived from alignment at Scaffold_38:91939..93782- (Ectocarpus subulatus male Bft15b)
GTACGTGGATATACTCCAAGGAGTCGCACAGGGCTGTACGATGTCACCCA
CTCTTTTCAAGATTTACATCAACGACTTGATAAGGACGGTTGAAGCAGTA
AGACAGTAAGTCCAAGTAGGGGGAAAGAGTGTGTCCGGAATGATGCTTGC
AGATGATTTCGTGGGGGTATCCGAAACACCAGAAGGGTTGCAGGAACAAA
TAGATGCGGCAGTAGGATACACCCGAAAAAGGAGACTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCGGTAGTAGACAGGTATAC
ATACGTACCTGGGAGTAGAGATTTCGAAGGAGTGCTCATGGGACGCACAC
ATAGCAAAGTTGATTGGGAAGGGTAAAGCTCAGATAGGCAAGATGGACGA
GATCCTTACGGAACCACACCTAGACACTAGGATTAAGAGGTGTGTTCTCT
TGAATGTGATTGTACCTAAGCTAGAGTATGCAGGAGAGGTATGGGAAGGT
AACGAAAAGGCCGTCAAGCAGCTGGAAACGGTGCAGATGGCAGCGGCCAA
GAAAATACTAGGATGTTCAAGTACAACGAGCAACACTGTATTGAGAGCAG
AACTGGGAATGTACTCTCTTAAAACAAAGAGAGACATGCAAAAGTTGAAT
TGGCAGTACAAGGTAAGTAGTATGTCGGACGATAGACTACCAGCCATGGT
TGACAAGGCAGCTTGGGGAAAAGCGACTCCAGGGAAGAAAGGAATCAGAT
GGGACAAGGTGGTAGAGAGGGTTTGGAAGGAGATAGGAAACGAGGAGGAG
ACATTGGACACGGAAGGGTTCGGGGGGTCCAAGAAGAAAGTCAAGGAGAT
GCTTGAAAGTAGGGAGGAGACAACCCTTCGGAAGAAGGTACGAAGCGAAG
ACCACTTGGAGATATACGGGAAGTTGAAAGAAGGGATAGGGATGAAAAGT
TACTTGGAAGGCCCCATGGACTACGCAAAAAAACTGAAGTTGCAATTTCG
AGTAGGCGATCTGGACTTGCCAGAACGGAGGAAGAGGTACAGCAGCCGTA
GGAGAGAGGAAGAGGAGGATAGACAGACATGTCCATGTGGCAAATCGGAG
GAGAGTAGACCCCACATAGTTGGGGAGTGTGAGCTGTACAGGAAGGAAAG
AGAGGATCTCGAGGAGGACATGAGACAGAGAGGGTGTGACATGGACAAGT
TTGGTAAATTAGACAACAGCGAACAAACGATCGTTGTAATTGGGGATAGA
TGGTGGGCACAAGAGACCGTAGAGGACGGGGATAAGATGTGCAAGAAATT
TTTATGTAGTTTGTGGCAGAAACGTAAAGAGCTCCCAAATGTTGGTGGTG
TCTCTAGTAGGGNCCCCCCCCCCCCCCCCCCCTTCTTCCAAGAAATACAT
AAGCTAGGTAGGGGTCGAGAGCATGGCAGCAGCAGCATCATCAGTGTGGG
ACGTTTGCTTCTTACTGGACGCGCTCCCCCAGCAACCCATCTTGTTTCTT
GTATCTGGGGGGTATCACACGATCATGTGTTTTCTTATTGGAATGTTTTT
TATGTTGTGGTCGAGATTGAGCTGAGCTTCTTAGCCTTGTTTTCTTGTTT
TTCGTTAAAAGTTGAACCAATTTTTCCCAACAGAATTTTCTTGATTGTGG
GCCCGTTCTGTATTTTTTGCTTATCCCCCATTGGGGGTCGTTGGTTTGTG
ACCAGGGAAGGCGTCCGAGTCAGTAGGACCAGTACGGACATTAG
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Coding sequence (CDS) from alignment at Scaffold_38:91939..93782-

>EsuBft1025_7a-0001 ID=EsuBft1025_7a-0001|Name=EsuBft1025_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1125bp|location=Sequence derived from alignment at Scaffold_38:91939..93782- (Ectocarpus subulatus male Bft15b)
ATGTCACCCACTCTTTTCAAGATTTACATCAACGACTTGATAAGGACGGT
TGAAGCAACAGGTATACATACGTACCTGGGAGTAGAGATTTCGAAGGAGT
GCTCATGGGACGCACACATAGCAAAGTTGATTGGGAAGGGTAAAGCTCAG
ATAGGCAAGATGGACGAGATCCTTACGGAACCACACCTAGACACTAGGAT
TAAGAGGTGTGTTCTCTTGAATGTGATTGTACCTAAGCTAGAGTATGCAG
GAGAGGTATGGGAAGGTAACGAAAAGGCCGTCAAGCAGCTGGAAACGGTG
CAGATGGCAGCGGCCAAGAAAATACTAGGATGTTCAAGTACAACGAGCAA
CACTGTATTGAGAGCAGAACTGGGAATGTACTCTCTTAAAACAAAGAGAG
ACATGCAAAAGTTGAATTGGCAGTACAAGGTAAGTAGTATGTCGGACGAT
AGACTACCAGCCATGGTTGACAAGGCAGCTTGGGGAAAAGCGACTCCAGG
GAAGAAAGGAATCAGATGGGACAAGGTGGTAGAGAGGGTTTGGAAGGAGA
TAGGAAACGAGGAGGAGACATTGGACACGGAAGGGTTCGGGGGGTCCAAG
AAGAAAGTCAAGGAGATGCTTGAAAGTAGGGAGGAGACAACCCTTCGGAA
GAAGGTACGAAGCGAAGACCACTTGGAGATATACGGGAAGTTGAAAGAAG
GGATAGGGATGAAAAGTTACTTGGAAGGCCCCATGGACTACGCAAAAAAA
CTGAAGTTGCAATTTCGAGTAGGCGATCTGGACTTGCCAGAACGGAGGAA
GAGGTACAGCAGCCGTAGGAGAGAGGAAGAGGAGGATAGACAGACATGTC
CATGTGGCAAATCGGAGGAGAGTAGACCCCACATAGTTGGGGAGTGTGAG
CTGTACAGGAAGGAAAGAGAGGATCTCGAGGAGGACATGAGACAGAGAGG
GTGTGACATGGACAAGTTTGGTAAATTAGACAACAGCGAACAAACGATCG
TTGTAATTGGGGATAGATGGTGGGCACAAGAGACCGTAGAGGACGGGGAT
AAGATGTGCAAGAAATTTTTATGTAGTTTGTGGCAGAAACGTAAAGAGCT
CCCAAATGACCAGTACGGACATTAG
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