EsuBft1023_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1023_3a-0001
Unique Name	EsuBft1023_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_132	contig	Scaffold_132:150873..156297 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1023_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	503
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1023_3a	EsuBft1023_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_132 150873..156297 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1023_3a-0001-exon	EsuBft1023_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_132 150873..155456 -
EsuBft1023_3a-0001-exon	agat-exon-33114	Ectocarpus subulatus male Bft15b	exon	Scaffold_132 155848..156297 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1023_3a-0001-exon	agat-three_prime_utr-236	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_132 150873..155450 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1023_3a-0001-cds	EsuBft1023_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_132 155451..155456 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1023_3a-0001	EsuBft1023_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_132 155451..156297 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_132:150873..156297-
coding sequence from alignment at Scaffold_132:150873..156297-

spliced messenger RNA

>EsuBft1023_3a-0001 ID=EsuBft1023_3a-0001|Name=EsuBft1023_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5034bp|location=Sequence derived from alignment at Scaffold_132:150873..156297- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCGAAGGAGTTCAAAGGGCTGTACGAGATGCTGCGGGGACGTCT
TGAGTGCCATGGCCCCGAAGGGCGTGGCCACAACGGCACCATAGCTGGGG
AGTGGGCGCTAGCTAGCACGTTGCGGTGGCTCGCAGGGCACGGCGTCAGC
GCTGCGGCTGATGGTCCCCACATGGCCACGAGCACAGCATTTGCGAAGAT
CAAGAAGGGGCTGGATGCCATCAACGACTATGGGAGGCTTCGGATAAAGT
GGCCGAGAAAGGAGCGGGAGCTTCAAGCGAAGGCGCAGAGGTTTGCTGCT
CGGAGATCCCAACTTGACCCTGTCCTGAAGCGCTGTGTGGGAGCATTGAA
TGGACTCCTTGTACGACGCAAGAAGCCTAGCATCACCGAACACCCTTATC
CACATCGGTTCTTTTCAGGGCACAAGATGACAGTGGGCATGAACTACCAG
GGCTGAGGATCGGTGTGCTGTGCACACCTCGCCTCCCCCCTCGTCTCTCA
CTCTTTTACCTTTCCCTCTCTTCCCAGAGACCACCACTGGCTCTTCCTAG
GGAAACTACTCTGTCCCGCTGTCATCAGCGGTCCCCACCGATCGCTCCGG
ACGTCTCCTCTGTCCCTACAGTTGAGAGAAGGTTCAACCCCTTCCATCGG
TCCGAGGTAGCTCACACCCTTATTGGGAACCTTAGCAGAAACAATAAATA
ACGGCCGTACTGCTGTTTGAGTTGTGTTGTTTAGGTGCATCAAAATGTGT
AAAACAATCCCCTCTCCTTCTTAATCCGCTGCAGTACACCGTTAGGGAAC
ACAATCACGCCATGACACCCGCCCTTGCCATCACACACTTGCGTGGATAC
AGAGTACAGAACGCGTCCGCAAGTAAGAAACTTAACATACGGGTTGAGGC
TCAATTTCTTATTTTCGACCGACCTGCCAGCCTTTGTTGCTGAAATCTTT
TCGCCGTTTCTTATTTTTTGGCCTTGCAGGATTTTGCTTGTTTCTTGTAT
AATGTACCATGTTTTCCCGCCGACGTTGAAGCCGTCACCCGTCTCCGTGT
CTAGCGCGGGAAGCTGCCGTGATTCTTGCGTCTCGCTGCATTTGATTGTC
CTTGCTTGAAATCAAGACCTTGCCACCATCTCTCACAGTAATTCTCGCCA
TGACCCAGGCACTCACATCGACGACAATCAATCGCGCAATAGAAAACGAA
CTGATGTGGCTTTCCCTCCGCTGATGTGCCGTACAGTAGTAGTTGTTGTT
GTCTTCACATTAAACCGTATGTCAGTTGCTAAATGCCAAAATCTAGCAAA
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GTCGCCCGCATGCTCCGGTGCCATTGCTCCATCCGGCGCCGCTGTACGCT
GTTGTAGTCAGCCCGAACATAACGCCACTCGACCTGCTCCGTCCGTACAC
GCTCTCGTTGCTGTCCTTCCCAGTTCGTTCCTCGCTTTCTCCCTCATTGC
ACTCGAGGTTCTTGGTCTGAAAAAAATAAAAATTCTCGCGCCGAATGGTC
AACCAGCCTAGTTCAGCTCGTCGCCACCTGCTCCCTCCTCCTTTGATGGC
GAAGCCAGGTTACTGAGGCAATACAGCTCCCTCTAGCAAACCTAGGGCCG
TGTAGTGCCCGTCCACCTTTCTGATGGTGTCTGCCTCCGCGCACAAAAAT
GAGATGGGCATCACTGCCAACGCCGACGGCCAGAAAGGCCCGCGCATGTA
CGTCTTCCCGCCTGACCCCATCAGTGCCGACCCAACTCCACCACCACACG
CACGCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNCACCACCACGCGCATGCCTCGCGGCGGATATGCGCAGC
AGCAAGAAGGTTTCGGTCATCCCTTGAGGGTGAGTCTAGCCCTGCTCGCC
AGAAAGACCCCCCCCTTCGCTACAACCCATGTCTAAGCAAAAGCTTGTCG
AGGAGCGAGGGGAAGAAGGGAGAGTAGTGGCATTCTCCAAAAGACAAACC
ACACGAAGTAGTTGAAAGAACGGGACCCAACAGCCATTCCGACATTACGC
CGAAAGCTCCGTGCGGCGAACATTTGGGGTTGTCGCCTCCTAGACCTCCT
CATCCTTGCCTCCTCCTGCTCTACCTCCAGCACCCACGCACCAACGCCCG
CGTCTGTCTGTCTTCATCAGGACTGTGAAACCAG

protein sequence of EsuBft1023_3a-0001

>EsuBft1023_3 ID=EsuBft1023_3|Name=EsuBft1023_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=151bp
MSPKEFKGLYEMLRGRLECHGPEGRGHNGTIAGEWALASTLRWLAGHGVS
AAADGPHMATSTAFAKIKKGLDAINDYGRLRIKWPRKERELQAKAQRFAA
RRSQLDPVLKRCVGALNGLLVRRKKPSITEHPYPHRFFSGHKMTVGMNYQ
G

mRNA from alignment at Scaffold_132:150873..156297-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1023_3a-0001 ID=EsuBft1023_3a-0001|Name=EsuBft1023_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5425bp|location=Sequence derived from alignment at Scaffold_132:150873..156297- (Ectocarpus subulatus male Bft15b)
ATGAGCCCGAAGGAGTTCAAAGGGCTGTACGAGATGCTGCGGGGACGTCT
TGAGTGCCATGGCCCCGAAGGGCGTGGCCACAACGGCACCATAGCTGGGG
AGTGGGCGCTAGCTAGCACGTTGCGGTGGCTCGCAGGGCACGGCGTCAGC
GCTGCGGCTGATGGTCCCCACATGGCCACGAGCACAGCATTTGCGAAGAT
CAAGAAGGGGCTGGATGCCATCAACGACTATGGGAGGCTTCGGATAAAGT
GGCCGAGAAAGGAGCGGGAGCTTCAAGCGAAGGCGCAGAGGTTTGCTGCT
CGGAGATCCCAACTTGACCCTGTCCTGAAGCGCTGTGTGGGAGCATTGAA
TGGACTCCTTGTACGACGCAAGAAGCCTAGCATCACCGAACACCCTTATC
CACATCGGTTCTTTTCAGGGCACAAGATGACAGTGGGCATGAACTACCAG
GTGCGAAAACTACATTATTTGAACCTAGCAGTAGACTGACTACTGTGTAC
AACGGTCAACAGCAGACTACTTGTTGTAGAAACAATACTTGTTGTAGGAG
TGTGAGTCACTGGTCTGTCTGCCATATAGGTTCCACTTGAGGCCCTCTGT
CCTCTGTCTAACTGTTCCTCCGCTGATTCTGCGGATCTTTCCGTGCGGCC
CGCATGCGCATGTATGTCACTGTATGCGCATGACCGGCTACCGCACATAC
TACACCCGCCCGGACATCACTGCCCGGCATATTGTCTTGTCCTCTCACGC
CCGAGGAGATAACGCCCCGGCCGTGCAAATGCTGTGCGCGTCACCGCGCC
AGCGCAGACTGCGCCACGTCAGGCTGGTTCTGCGTCGACAGGGCTGAGGA
TCGGTGTGCTGTGCACACCTCGCCTCCCCCCTCGTCTCTCACTCTTTTAC
CTTTCCCTCTCTTCCCAGAGACCACCACTGGCTCTTCCTAGGGAAACTAC
TCTGTCCCGCTGTCATCAGCGGTCCCCACCGATCGCTCCGGACGTCTCCT
CTGTCCCTACAGTTGAGAGAAGGTTCAACCCCTTCCATCGGTCCGAGGTA
GCTCACACCCTTATTGGGAACCTTAGCAGAAACAATAAATAACGGCCGTA
CTGCTGTTTGAGTTGTGTTGTTTAGGTGCATCAAAATGTGTAAAACAATC
CCCTCTCCTTCTTAATCCGCTGCAGTACACCGTTAGGGAACACAATCACG
CCATGACACCCGCCCTTGCCATCACACACTTGCGTGGATACAGAGTACAG
AACGCGTCCGCAAGTAAGAAACTTAACATACGGGTTGAGGCTCAATTTCT
TATTTTCGACCGACCTGCCAGCCTTTGTTGCTGAAATCTTTTCGCCGTTT
CTTATTTTTTGGCCTTGCAGGATTTTGCTTGTTTCTTGTATAATGTACCA
TGTTTTCCCGCCGACGTTGAAGCCGTCACCCGTCTCCGTGTCTAGCGCGG
GAAGCTGCCGTGATTCTTGCGTCTCGCTGCATTTGATTGTCCTTGCTTGA
AATCAAGACCTTGCCACCATCTCTCACAGTAATTCTCGCCATGACCCAGG
CACTCACATCGACGACAATCAATCGCGCAATAGAAAACGAACTGATGTGG
CTTTCCCTCCGCTGATGTGCCGTACAGTAGTAGTTGTTGTTGTCTTCACA
TTAAACCGTATGTCAGTTGCTAAATGCCAAAATCTAGCAAAGANNNNNNN
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NNNNNNNNNNNNAAATGTTTGTCCGTGCGCCACGGGTCGATGTCGCCCGC
ATGCTCCGGTGCCATTGCTCCATCCGGCGCCGCTGTACGCTGTTGTAGTC
AGCCCGAACATAACGCCACTCGACCTGCTCCGTCCGTACACGCTCTCGTT
GCTGTCCTTCCCAGTTCGTTCCTCGCTTTCTCCCTCATTGCACTCGAGGT
TCTTGGTCTGAAAAAAATAAAAATTCTCGCGCCGAATGGTCAACCAGCCT
AGTTCAGCTCGTCGCCACCTGCTCCCTCCTCCTTTGATGGCGAAGCCAGG
TTACTGAGGCAATACAGCTCCCTCTAGCAAACCTAGGGCCGTGTAGTGCC
CGTCCACCTTTCTGATGGTGTCTGCCTCCGCGCACAAAAATGAGATGGGC
ATCACTGCCAACGCCGACGGCCAGAAAGGCCCGCGCATGTACGTCTTCCC
GCCTGACCCCATCAGTGCCGACCCAACTCCACCACCACACGCACGCCTCG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNCACCACCACGCGCATGCCTCGCGGCGGATATGCGCAGCAGCAAGAAG
GTTTCGGTCATCCCTTGAGGGTGAGTCTAGCCCTGCTCGCCAGAAAGACC
CCCCCCTTCGCTACAACCCATGTCTAAGCAAAAGCTTGTCGAGGAGCGAG
GGGAAGAAGGGAGAGTAGTGGCATTCTCCAAAAGACAAACCACACGAAGT
AGTTGAAAGAACGGGACCCAACAGCCATTCCGACATTACGCCGAAAGCTC
CGTGCGGCGAACATTTGGGGTTGTCGCCTCCTAGACCTCCTCATCCTTGC
CTCCTCCTGCTCTACCTCCAGCACCCACGCACCAACGCCCGCGTCTGTCT
GTCTTCATCAGGACTGTGAAACCAG

Coding sequence (CDS) from alignment at Scaffold_132:150873..156297-

>EsuBft1023_3a-0001 ID=EsuBft1023_3a-0001|Name=EsuBft1023_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=456bp|location=Sequence derived from alignment at Scaffold_132:150873..156297- (Ectocarpus subulatus male Bft15b)
ATGAGCCCGAAGGAGTTCAAAGGGCTGTACGAGATGCTGCGGGGACGTCT
TGAGTGCCATGGCCCCGAAGGGCGTGGCCACAACGGCACCATAGCTGGGG
AGTGGGCGCTAGCTAGCACGTTGCGGTGGCTCGCAGGGCACGGCGTCAGC
GCTGCGGCTGATGGTCCCCACATGGCCACGAGCACAGCATTTGCGAAGAT
CAAGAAGGGGCTGGATGCCATCAACGACTATGGGAGGCTTCGGATAAAGT
GGCCGAGAAAGGAGCGGGAGCTTCAAGCGAAGGCGCAGAGGTTTGCTGCT
CGGAGATCCCAACTTGACCCTGTCCTGAAGCGCTGTGTGGGAGCATTGAA
TGGACTCCTTGTACGACGCAAGAAGCCTAGCATCACCGAACACCCTTATC
CACATCGGTTCTTTTCAGGGCACAAGATGACAGTGGGCATGAACTACCAG
GGCTGA