EsuBft1022_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1022_3a-0001
Unique Name	EsuBft1022_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_103	contig	Scaffold_103:245705..246800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FI08
ProteomeId	EsuBft1022_3
Protein domains	IPR004875
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	pogo transposable element with krab domain os:homo sapiens gn:pogk pe:1 sv:2 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	943
Evalue	2.22e-84
EggNOG OGs	2DCSR@1\|root,2S5KN@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_3a	EsuBft1022_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_103 245705..246800 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_3a-0001-exon	agat-exon-79143	Ectocarpus subulatus male Bft15b	exon	Scaffold_103 245705..246610 +
EsuBft1022_3a-0001-exon	EsuBft1022_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_103 246764..246800 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_3a-0001-cds	EsuBft1022_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_103 245705..246610 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_3a-0001-exon	agat-three_prime_utr-225	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_103 246794..246800 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_3a-0001	EsuBft1022_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_103 245705..246793 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_103:245705..246800+
coding sequence from alignment at Scaffold_103:245705..246800+

spliced messenger RNA

>EsuBft1022_3a-0001 ID=EsuBft1022_3a-0001|Name=EsuBft1022_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=943bp|location=Sequence derived from alignment at Scaffold_103:245705..246800+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCCCGGACGGGTTTCGACTCNACTTCGTGAAGGAGCTGAGGGA
CAACGCCGACCAGGTACCGTTGGGGTTCGTGACCGGGCAGGAAGACACCT
GGGACAAACGAGGGGCGAAGCGTGTGCATGTTGGCCAGCCATTCCCCGGC
TTGGAGAAGCGGCAGTGCACGGTGCAACCGACGACGGGAGCAGGAGGGAA
AAAGACGAGGTGCGCGACCATCTTCCGCGGCAAAGGAACCGGCATCACCA
AGGTGGAGAAGGCAGCATACGACAAGCGCCTAGATGTCTTCTTTCAGCCC
AAGGCCTGGGCCGACAGCGACTTCTGCATGCAATGGCTGGAGCGCTCTTT
TCGCCCGAGCCGAATGGTAGACGGGAAGGTGCCCGAGGAGCAGTCGCTTC
TTCTCGCCGACAACCTGCACGGGCAGACGACTGAGGAATTCCGCAAGTAC
GAGGAGTGCAACACGTTTTTTTGGCACCTGCCGGCAGGCTGTACGGACGA
GGTCCAGCCGATCGACGCCGGCTATGGACGGCGGCTGAAGGTGGCTGTGG
GGGTGCAGCTGGACAAGTGGCTGGAGAGCGGAGACAACCTGCAAAAGTGG
GAGGCCAAAGCACTGACGTGTTCCGAACGTCGCTTGTTGCTTACCAGTTG
GGTGGCACAGGCGACCGAGGAGATCGATAAACAAGAGCAATATCGGATCC
GTCTCTTCGAGAAAACCGGATGTGGAATGACGGCGGATGGCTCTGGGGAC
GACAATTCAACCTCGAGGGCCTTTCCACATATTCCTTCATGGATGTGGAG
GGTGGCGCCAGCGCTGATGAGGAGGGCAAGGAGGATGGGGACACCAGCAA
GGTTGACGTGGACCAGCTGTCGGAAGACGCCTCTTCCAGCGTTGACGAGA
GCGATGGAGACGATGACAACGATGAGGATCCGCTGACCTAGCT

protein sequence of EsuBft1022_3a-0001

>EsuBft1022_3 ID=EsuBft1022_3|Name=EsuBft1022_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=311bp
MDIPDGFRLXFVKELRDNADQVPLGFVTGQEDTWDKRGAKRVHVGQPFPG
LEKRQCTVQPTTGAGGKKTRCATIFRGKGTGITKVEKAAYDKRLDVFFQP
KAWADSDFCMQWLERSFRPSRMVDGKVPEEQSLLLADNLHGQTTEEFRKY
EECNTFFWHLPAGCTDEVQPIDAGYGRRLKVAVGVQLDKWLESGDNLQKW
EAKALTCSERRLLLTSWVAQATEEIDKQEQYRIRLFEKTGCGMTADGSGD
DNSTSRAFPHIPSWMWRVAPALMRRARRMGTPARLTWTSCRKTPLPALTR
AMETMTTMRIR

mRNA from alignment at Scaffold_103:245705..246800+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1022_3a-0001 ID=EsuBft1022_3a-0001|Name=EsuBft1022_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1096bp|location=Sequence derived from alignment at Scaffold_103:245705..246800+ (Ectocarpus subulatus male Bft15b)
ATGGACATCCCGGACGGGTTTCGACTCNACTTCGTGAAGGAGCTGAGGGA
CAACGCCGACCAGGTACCGTTGGGGTTCGTGACCGGGCAGGAAGACACCT
GGGACAAACGAGGGGCGAAGCGTGTGCATGTTGGCCAGCCATTCCCCGGC
TTGGAGAAGCGGCAGTGCACGGTGCAACCGACGACGGGAGCAGGAGGGAA
AAAGACGAGGTGCGCGACCATCTTCCGCGGCAAAGGAACCGGCATCACCA
AGGTGGAGAAGGCAGCATACGACAAGCGCCTAGATGTCTTCTTTCAGCCC
AAGGCCTGGGCCGACAGCGACTTCTGCATGCAATGGCTGGAGCGCTCTTT
TCGCCCGAGCCGAATGGTAGACGGGAAGGTGCCCGAGGAGCAGTCGCTTC
TTCTCGCCGACAACCTGCACGGGCAGACGACTGAGGAATTCCGCAAGTAC
GAGGAGTGCAACACGTTTTTTTGGCACCTGCCGGCAGGCTGTACGGACGA
GGTCCAGCCGATCGACGCCGGCTATGGACGGCGGCTGAAGGTGGCTGTGG
GGGTGCAGCTGGACAAGTGGCTGGAGAGCGGAGACAACCTGCAAAAGTGG
GAGGCCAAAGCACTGACGTGTTCCGAACGTCGCTTGTTGCTTACCAGTTG
GGTGGCACAGGCGACCGAGGAGATCGATAAACAAGAGCAATATCGGATCC
GTCTCTTCGAGAAAACCGGATGTGGAATGACGGCGGATGGCTCTGGGGAC
GACAATTCAACCTCGAGGGCCTTTCCACATATTCCTTCATGGATGTGGAG
GGTGGCGCCAGCGCTGATGAGGAGGGCAAGGAGGATGGGGACACCAGCAA
GGTTGACGTGGACCAGCTGTCGGAAGACGCCTCTTCCAGCGTTGACGAGA
GCGATGGTTAGTGGTATTATATTTCGCGTTCATTCGGAGCACAGAAGAAT
TACCCTTGCGGAAGAAAGCTCCTCTTGACACATTAATGAGTTTTGGAATG
TTGTCCCCGCTTCGGGAATCGCCACAACAATAGACGATGCCTCCGCTGTG
CCTTGTCAGGAGACGATGACAACGATGAGGATCCGCTGACCTAGCT

Coding sequence (CDS) from alignment at Scaffold_103:245705..246800+

>EsuBft1022_3a-0001 ID=EsuBft1022_3a-0001|Name=EsuBft1022_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=936bp|location=Sequence derived from alignment at Scaffold_103:245705..246800+ (Ectocarpus subulatus male Bft15b)
ATGGACATCCCGGACGGGTTTCGACTCNACTTCGTGAAGGAGCTGAGGGA
CAACGCCGACCAGGTACCGTTGGGGTTCGTGACCGGGCAGGAAGACACCT
GGGACAAACGAGGGGCGAAGCGTGTGCATGTTGGCCAGCCATTCCCCGGC
TTGGAGAAGCGGCAGTGCACGGTGCAACCGACGACGGGAGCAGGAGGGAA
AAAGACGAGGTGCGCGACCATCTTCCGCGGCAAAGGAACCGGCATCACCA
AGGTGGAGAAGGCAGCATACGACAAGCGCCTAGATGTCTTCTTTCAGCCC
AAGGCCTGGGCCGACAGCGACTTCTGCATGCAATGGCTGGAGCGCTCTTT
TCGCCCGAGCCGAATGGTAGACGGGAAGGTGCCCGAGGAGCAGTCGCTTC
TTCTCGCCGACAACCTGCACGGGCAGACGACTGAGGAATTCCGCAAGTAC
GAGGAGTGCAACACGTTTTTTTGGCACCTGCCGGCAGGCTGTACGGACGA
GGTCCAGCCGATCGACGCCGGCTATGGACGGCGGCTGAAGGTGGCTGTGG
GGGTGCAGCTGGACAAGTGGCTGGAGAGCGGAGACAACCTGCAAAAGTGG
GAGGCCAAAGCACTGACGTGTTCCGAACGTCGCTTGTTGCTTACCAGTTG
GGTGGCACAGGCGACCGAGGAGATCGATAAACAAGAGCAATATCGGATCC
GTCTCTTCGAGAAAACCGGATGTGGAATGACGGCGGATGGCTCTGGGGAC
GACAATTCAACCTCGAGGGCCTTTCCACATATTCCTTCATGGATGTGGAG
GGTGGCGCCAGCGCTGATGAGGAGGGCAAGGAGGATGGGGACACCAGCAA
GGTTGACGTGGACCAGCTGTCGGAAGACGCCTCTTCCAGCGTTGACGAGA
GCGATGGAGACGATGACAACGATGAGGATCCGCTGA