EsuBft1022_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1022_2a-0001
Unique Name	EsuBft1022_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_103	contig	Scaffold_103:244778..245574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LRF1
ProteomeId	EsuBft1022_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	79
Hectar predicted targeting category	other localisation
Evalue	1.84e-12
EggNOG OGs	2DCSR@1\|root,2S5KN@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_2a	EsuBft1022_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_103 244778..245574 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_2a-0001-exon	EsuBft1022_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_103 244778..245574 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_2a-0001-exon	agat-five_prime_utr-133	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_103 244778..245082 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_2a-0001-cds	EsuBft1022_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_103 245083..245454 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_2a-0001-exon	agat-three_prime_utr-224	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_103 245455..245574 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1022_2a-0001	EsuBft1022_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_103 245083..245454 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_103:244778..245574+
coding sequence from alignment at Scaffold_103:244778..245574+

spliced messenger RNA

>EsuBft1022_2a-0001 ID=EsuBft1022_2a-0001|Name=EsuBft1022_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=797bp|location=Sequence derived from alignment at Scaffold_103:244778..245574+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGTGCGTACGCGTGGGGACGGCAGCACGGAAGAGATCACGAACATCAA
TTTCGCCGCGCCTCCACCGCCTCAACCGACAGTGCCTTGTACGAAGTGCA
ACCGTCGTTTCTTCAACACCCAGGGCCTTGGGGTGCACATCAACACTAAC
CACGAGCGTGAAGCGAAGATCTCAGTTCGACGGTGGTGTTCAACGAACAG
GAAGGGGGCGGGGGCATCATCTCTCCTCCCTTGGGGTGGGACACCGTCAG
GACGTTGCTGGCACGTTGCGTTTCACCATGGAGAGAGTCGCGGATACGGC
GCGACATGTCCGCCAGGGTCCGTGACGTTTGTGCTGCAGCCCTACGCCCT
GGAGTCGAGCGGAACAACAACCTCGTGAACGACGGCTTTTCACAATCGGA
GTCGCCACCAAAGAAAACGTGTGGAGCAGCCTCGAGGAGACGGTACACCT
CGCGCGAGAAGGTCGGTGTTATTCAGGAGCTGCGAGATCTAGAGTCGCGG
TCAGCGGAGGTTCGTGCGCGCTTCGGTATGACCCCTCTCTTTTACTTGGA
ACATAAGTCAGGGATCTCGGCCAGCAATATCAGCAAATGGCAGAAGGATG
AAGACTCTCTTGTGCAGCAGGCAGCTGACAAGGTGCGGAGTTGTTTGATG
GCGACATGCACTCGACGGCGGCTGTGATTCCCTGACGCGGAGAAGGAGCT
GTACAAGATGTTGCTGGCACGACGCAAGAGGAAGCTGCGGGTCTCGACAA
GGTGGATCACGGTCACTTTCAAAAAGCTCATCATGGAAAGGTACCCG

protein sequence of EsuBft1022_2a-0001

>EsuBft1022_2 ID=EsuBft1022_2|Name=EsuBft1022_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=123bp
MSARVRDVCAAALRPGVERNNNLVNDGFSQSESPPKKTCGAASRRRYTSR
EKVGVIQELRDLESRSAEVRARFGMTPLFYLEHKSGISASNISKWQKDED
SLVQQAADKVRSCLMATCTRRRL

mRNA from alignment at Scaffold_103:244778..245574+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1022_2a-0001 ID=EsuBft1022_2a-0001|Name=EsuBft1022_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=797bp|location=Sequence derived from alignment at Scaffold_103:244778..245574+ (Ectocarpus subulatus male Bft15b)
GTGGTGCGTACGCGTGGGGACGGCAGCACGGAAGAGATCACGAACATCAA
TTTCGCCGCGCCTCCACCGCCTCAACCGACAGTGCCTTGTACGAAGTGCA
ACCGTCGTTTCTTCAACACCCAGGGCCTTGGGGTGCACATCAACACTAAC
CACGAGCGTGAAGCGAAGATCTCAGTTCGACGGTGGTGTTCAACGAACAG
GAAGGGGGCGGGGGCATCATCTCTCCTCCCTTGGGGTGGGACACCGTCAG
GACGTTGCTGGCACGTTGCGTTTCACCATGGAGAGAGTCGCGGATACGGC
GCGACATGTCCGCCAGGGTCCGTGACGTTTGTGCTGCAGCCCTACGCCCT
GGAGTCGAGCGGAACAACAACCTCGTGAACGACGGCTTTTCACAATCGGA
GTCGCCACCAAAGAAAACGTGTGGAGCAGCCTCGAGGAGACGGTACACCT
CGCGCGAGAAGGTCGGTGTTATTCAGGAGCTGCGAGATCTAGAGTCGCGG
TCAGCGGAGGTTCGTGCGCGCTTCGGTATGACCCCTCTCTTTTACTTGGA
ACATAAGTCAGGGATCTCGGCCAGCAATATCAGCAAATGGCAGAAGGATG
AAGACTCTCTTGTGCAGCAGGCAGCTGACAAGGTGCGGAGTTGTTTGATG
GCGACATGCACTCGACGGCGGCTGTGATTCCCTGACGCGGAGAAGGAGCT
GTACAAGATGTTGCTGGCACGACGCAAGAGGAAGCTGCGGGTCTCGACAA
GGTGGATCACGGTCACTTTCAAAAAGCTCATCATGGAAAGGTACCCG

Coding sequence (CDS) from alignment at Scaffold_103:244778..245574+

>EsuBft1022_2a-0001 ID=EsuBft1022_2a-0001|Name=EsuBft1022_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=372bp|location=Sequence derived from alignment at Scaffold_103:244778..245574+ (Ectocarpus subulatus male Bft15b)
ATGTCCGCCAGGGTCCGTGACGTTTGTGCTGCAGCCCTACGCCCTGGAGT
CGAGCGGAACAACAACCTCGTGAACGACGGCTTTTCACAATCGGAGTCGC
CACCAAAGAAAACGTGTGGAGCAGCCTCGAGGAGACGGTACACCTCGCGC
GAGAAGGTCGGTGTTATTCAGGAGCTGCGAGATCTAGAGTCGCGGTCAGC
GGAGGTTCGTGCGCGCTTCGGTATGACCCCTCTCTTTTACTTGGAACATA
AGTCAGGGATCTCGGCCAGCAATATCAGCAAATGGCAGAAGGATGAAGAC
TCTCTTGTGCAGCAGGCAGCTGACAAGGTGCGGAGTTGTTTGATGGCGAC
ATGCACTCGACGGCGGCTGTGA