EsuBft1021_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1021_5a-0001
Unique NameEsuBft1021_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_63contigScaffold_63:556793..559049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1021_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length149
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_000520.5
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_5aEsuBft1021_5aEctocarpus subulatus male Bft15bgeneScaffold_63 556793..559049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_5a-0001EsuBft1021_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_63 558675..559049 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_5a-0001-exonagat-exon-111383Ectocarpus subulatus male Bft15bexonScaffold_63 556793..557278 -
EsuBft1021_5a-0001-exonagat-exon-111382Ectocarpus subulatus male Bft15bexonScaffold_63 557455..557549 -
EsuBft1021_5a-0001-exonEsuBft1021_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_63 558061..558797 -
EsuBft1021_5a-0001-exonagat-exon-111381Ectocarpus subulatus male Bft15bexonScaffold_63 558870..559049 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_5a-0001-exonagat-three_prime_utr-219Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_63 556793..557278 -
EsuBft1021_5a-0001-exonagat-three_prime_utr-220Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_63 557455..557549 -
EsuBft1021_5a-0001-exonagat-three_prime_utr-221Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_63 558061..558674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_5a-0001-cdsEsuBft1021_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_63 558675..558797 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1021_5a-0001 ID=EsuBft1021_5a-0001|Name=EsuBft1021_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1498bp|location=Sequence derived from alignment at Scaffold_63:556793..559049- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCTGCCCCTTGCAGCAACGCAGACAAACCAATGGCATCTACTAG
CTGGTGGGAACTACACCAAGACCCTGCACCACGAACTGGCCTACCTGCCG
GACCGAGCTTGCCTACTTCACGTGTCAACTGTGAGCCGGGCAGGGGAGGC
AAAATTGATTCTGACATATTCAGTAGTGCGGAGTTGAGAGAGGTGCATGG
GGGGCCAGAGGAGACCTGGAATGATACAATTGCTGCGGCAGACTGGCTAG
ATGCTACTCATGCCATGTTGGGTGCAATCTGCGATGATGGCCCGGCACAG
TAACGTTTGCCGTAGGTTGTCGCTGTTAAATTTGTGGGCGAAGAGGCATT
GTGGACGTTAACAATTGGTCCCGGTTGGTAAAACAGCGTACAAATCATTT
TTTTGTTTTGTATCGGATGCCCAGTTACTCCTCCCCTGGGCGGCGGATTT
ATCCGAAAAAGTCCTACAATGCAGCTCTTCGTGAGACTTGACAAGCCAGA
ATTGGGACCAACGAGTATGTGCAGTGTGTCGGAGGAACGTGTATGCGTTG
GTCTGTGTTTTGTTGCTGTCTTTGAAGCATCATAGGAAGACGCAATGGGG
TGGAATGTTTCATCGAAATACGTCGTTTCGACCATCCAGCGCAGCCCATC
AACTATGCCACGCTTGACAGGCTGTTGCTCCTCCCTTCGCACCCTCTTCG
AATATTCACTCCGCACGAAGGGTGGCTGCGCGGCAAGGGGAAGCCTTAGA
GGGGGGCGCGGCGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGC
ACAGCCTTCTGTAGTAGGTACCGTAAGGTTGCGGGTTAGCGCGCCCCCGT
GCGATCGTTTTTTAAACATTTTCGCTATTTAGTTTTCATCGCACAGGGGT
GCGATGACTCCGGTACCGTAAGGTTGCGGGTTAGCGCGCCCCCGTGCGAT
CGTTTTTTAAACATTTTCGCTATTTAGTTTTCATCGCACAGGGGTGCGAT
GACTCCGGCCCGTGCGATGACTCCATACTCTGTGCGGAAATTTGGGTTTG
ACACATAACGCACACCCCTGTGCGATGACTTTAGTATGTACGGTCCTGAG
TAAACCCTGGAGGCGATATTATCAAGAATTTCAACGCATACCCCTGTGCG
ATGACTCCGGTATGTGCGGTCCTGAGTAAACCCTGGAGGCGATATTATCA
AGAATTTCAACGCACACCCCTGTGCGACAACTTGAGTATGTGCGGTACTT
GAACGAAAGCAGACGCACGGACACATTAGCTGTGCTGCGGTTGCAGGCTC
CACACGCAACGTACACACACGCGCGCATGATAGCCAACCACAGTAGCTAG
CCCGATGGATGCTAGGTTTCGGAGAAAGAACACAAGACACACACACAC
back to top

protein sequence of EsuBft1021_5a-0001

>EsuBft1021_5 ID=EsuBft1021_5|Name=EsuBft1021_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MMAAPCSNADKPMASTSWWELHQDPAPRTGLPAGPSLPTSRVNCEPGRGG
KIDSDIFSSAELREVHGGPEETWNDTIAAADWLDATHAMLGAICDDGPAQ
back to top

mRNA from alignment at Scaffold_63:556793..559049-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1021_5a-0001 ID=EsuBft1021_5a-0001|Name=EsuBft1021_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2257bp|location=Sequence derived from alignment at Scaffold_63:556793..559049- (Ectocarpus subulatus male Bft15b)
ATGATGGCTGCCCCTTGCAGCAACGCAGACAAACCAATGGCATCTACTAG
CTGGTGGGAACTACACCAAGACCCTGCACCACGAACTGGCCTACCTGCCG
GACCGAGCTTGCCTACTTCACGTGTCAACTGTGAGCCGGGCAGGGGAGGC
AAAATTGATTCTGACATATTCAGTAGTGCGGTCTAGGGGTGTAGTGGTGG
TGCGATTTCTGGCTGGGTAGCCCATGTTCCCGATATGTCCTTGAGATTGC
AGGAGTTGAGAGAGGTGCATGGGGGGCCAGAGGAGACCTGGAATGATACA
ATTGCTGCGGCAGACTGGCTAGATGCTACTCATGCCATGTTGGGTGCAAT
CTGCGATGATGGCCCGGCACAGTAACGTTTGCCGTAGGTTGTCGCTGTTA
AATTTGTGGGCGAAGAGGCATTGTGGACGTTAACAATTGGTCCCGGTTGG
TAAAACAGCGTACAAATCATTTTTTTGTTTTGTATCGGATGCCCAGTTAC
TCCTCCCCTGGGCGGCGGATTTATCCGAAAAAGTCCTACAATGCAGCTCT
TCGTGAGACTTGACAAGCCAGAATTGGGACCAACGAGTATGTGCAGTGTG
TCGGAGGAACGTGTATGCGTTGGTCTGTGTTTTGTTGCTGTCTTTGAAGC
ATCATAGGAAGACGCAATGGGGTGGAATGTTTCATCGAAATACGTCGTTT
CGACCATCCAGCGCAGCCCATCAACTATGCCACGCTTGACAGGCTGTTGC
TCCTCCCTTCGCACCCTCTTCGAATATTCACTCCGCACGAAGGGTGGCTG
CGCGGCAAGGGGAAGCCTTAGAGGGGGGCGCGGCGGACNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGTGAGCACAGCCTTCTGTAGTAGGTACGTTGCGG
CATCTGTTCAAACTGGCGTCGTAATACTCAGGGTCAATGAGGCGTGGATG
CGCAGACCGATGATGTCATCGCAGGACACTCCTTATCATTATAAGGCGGT
TGCAGATTTCCTCCTTTGGCATCATATTGCATCGGCACTCTTCTCTAGCT
CTATCCAACGTTCGCCGGATGCGTGTGTAAGAAGGACTGCAGCGACCAGA
TCTGGCGTGTCGTGTGCCATACCAAGCACCACAGTAAACCAAGTACAGCA
ACGAAGGACACCCATGCGTAACGTTGTGGTAGGCATCACAGCAACCAGAC
GAACAGCAATGTCGGATAGGCGAAAATTGGCGCAAAACACCTCACATAAG
AACACCTGACTAACCTTAACCCTCATGCGGCATGCTCCGAGAAGTCACGC
GTGCATCGTGACATGAATAATGTGTATTGTAGCATGAATACTGTACGACC
ATAGCGAAAATACGCGGCAAGTACCGCAACAACAATGTGTGTTCTCTCAG
GTACCGTAAGGTTGCGGGTTAGCGCGCCCCCGTGCGATCGTTTTTTAAAC
ATTTTCGCTATTTAGTTTTCATCGCACAGGGGTGCGATGACTCCGGTATG
TGCGGTCCTGAGTAAACCCTGGAGGCGATATTATCAAGAATTTCAACGCA
CACCCCTGTGCGACAACTTCAGTATGTGCGGTACTTGAACGAAAGCAGAC
GCACGGACACANTGTACGACCATAGCGAAAATACGCGGCAAGTACCGCAA
CAACAATGTGTGTTCTCTCAGGTACCGTAAGGTTGCGGGTTAGCGCGCCC
CCGTGCGATCGTTTTTTAAACATTTTCGCTATTTAGTTTTCATCGCACAG
GGGTGCGATGACTCCGGCCCGTGCGATGACTCCATACTCTGTGCGGAAAT
TTGGGTTTGACACATAACGCACACCCCTGTGCGATGACTTTAGTATGTAC
GGTCCTGAGTAAACCCTGGAGGCGATATTATCAAGAATTTCAACGCATAC
CCCTGTGCGATGACTCCGGTATGTGCGGTCCTGAGTAAACCCTGGAGGCG
ATATTATCAAGAATTTCAACGCACACCCCTGTGCGACAACTTGAGTATGT
GCGGTACTTGAACGAAAGCAGACGCACGGACACATTAGCTGTGCTGCGGT
TGCAGGCTCCACACGCAACGTACACACACGCGCGCATGATAGCCAACCAC
AGTAGCTAGCCCGATGGATGCTAGGTTTCGGAGAAAGAACACAAGACACA
CACACAC
back to top

Coding sequence (CDS) from alignment at Scaffold_63:556793..559049-

>EsuBft1021_5a-0001 ID=EsuBft1021_5a-0001|Name=EsuBft1021_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_63:556793..559049- (Ectocarpus subulatus male Bft15b)
ATGATGGCTGCCCCTTGCAGCAACGCAGACAAACCAATGGCATCTACTAG
CTGGTGGGAACTACACCAAGACCCTGCACCACGAACTGGCCTACCTGCCG
GACCGAGCTTGCCTACTTCACGTGTCAACTGTGAGCCGGGCAGGGGAGGC
AAAATTGATTCTGACATATTCAGTAGTGCGGAGTTGAGAGAGGTGCATGG
GGGGCCAGAGGAGACCTGGAATGATACAATTGCTGCGGCAGACTGGCTAG
ATGCTACTCATGCCATGTTGGGTGCAATCTGCGATGATGGCCCGGCACAG
TAA
back to top