Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXD3 |
| ProteomeId | EsuBft1021_4 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 105 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.48e-29 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Preferred name | POGK |
| KEGG ko | ko:K09228 |
| Description | DNA binding |
| COG category | CH |
| BRITE | ko00000,ko03000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1021_4a-0001 ID=EsuBft1021_4a-0001|Name=EsuBft1021_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1050bp|location=Sequence derived from alignment at Scaffold_63:554247..556203- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTTGCGGCAAACGACCCCACACCATCACACCACAAAAAGCGCAAACA
CCCCGAGCCTGACTTCGCCAACGAGAGGACCGGAGGCAAGAAAGGGAGCT
ACTCCATGAGATTCAAACTGAAAGCAGCCACATTCACGCGAGTCCTTTGC
GAGGATGGTCAACCAGTGGGAAATTCCGGAGCGGCGAACGTTCTCGGGGT
GGATCGTAGGCGCATCATCACCTGGGTCGGCGAGGAGGCAACAATGAAGA
AGCTGGTGAAGGAGAAGCCTAAACTATCGAAGGCAAAATCGATTCACGCT
GGTATGGCACCTATGACAGCCGAGGTCGAACAAGACCTGGAGGACTACAT
CAACGAGCAGCGTAGGGAACATCGCGGCTGCGGAAGCATGGAAGTCATGA
ACAAGCTGCTTGAGCTGAAGCCTGACGCTCTCGGCGGGTTGACAGCCGCT
GCGTCGGCGGAGGAGACATTGGCTTCCAGGACCAAGTTCAAGACCTGGTA
CCATCGTTTCCGCGAACGCCGCGGTTTCAGCATCCGCCGGCGCACTAGCC
CGACGGGGTACGAGGGTTTGGCGTTCGCGACGTTGATGAAGCTTCGTACG
GCCCTCTTGGAGCGCGCTGGTGAGATCTACGCTCGGCGCAACCCATCTGC
ATCTGGCGAGAGCCCCATCAAAGGGAAGGACCTCAGTCCCGTGCAGCTAG
AGTCGGCTGCCGCGGAAGTGTTCGAAGAACTCGGCAATATGGACCAAACG
CCAGTCCAGCAGGAGATGCCAGTGGAAACAACTCTGGAGAAGCGCGGTGC
GAAGAGGATGCTCGCATCAGCACGGGAGTACATGGCGTCGGCGATCGCAG
ACCCCAAGACGGGCAAGCTTCAACCGCCGGGGCGTGGGCTCGTGTCGACG
TGGTGCTAGGAGTCATGGACAGCTATCACCCCCGAAACGGTCAAGATGTG
CTTCAAGGTGTGCGGCCTCACGCTTGCGCTCGACGGTAGCGAGGACGACG
CGTGGTGCACCCACAACTTTGGTGAAGGCTACCGTGAGGTTCTAGTCCAG back to topprotein sequence of EsuBft1021_4a-0001 >EsuBft1021_4 ID=EsuBft1021_4|Name=EsuBft1021_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=302bp
MLAANDPTPSHHKKRKHPEPDFANERTGGKKGSYSMRFKLKAATFTRVLC
EDGQPVGNSGAANVLGVDRRRIITWVGEEATMKKLVKEKPKLSKAKSIHA
GMAPMTAEVEQDLEDYINEQRREHRGCGSMEVMNKLLELKPDALGGLTAA
ASAEETLASRTKFKTWYHRFRERRGFSIRRRTSPTGYEGLAFATLMKLRT
ALLERAGEIYARRNPSASGESPIKGKDLSPVQLESAAAEVFEELGNMDQT
PVQQEMPVETTLEKRGAKRMLASAREYMASAIADPKTGKLQPPGRGLVST
WC back to topmRNA from alignment at Scaffold_63:554247..556203- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1021_4a-0001 ID=EsuBft1021_4a-0001|Name=EsuBft1021_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1957bp|location=Sequence derived from alignment at Scaffold_63:554247..556203- (Ectocarpus subulatus male Bft15b)
ATGCTTGCGGCAAACGACCCCACACCATCACACCACAAAAAGCGCAAACA
CCCCGAGCCTGACTTCGCCAACGAGAGGACCGGAGGCAAGAAAGGGAGCT
ACTCCATGAGATTCAAACTGAAAGCAGCCACATTCACGCGAGTCCTTTGC
GAGGATGGTCAACCAGTGGGAAATTCCGGAGCGGCGAACGTTCTCGGGGT
GGATCGTAGGCGCATCATCACCTGGGTCGGCGAGGAGGCAACAATGAAGA
AGCTGGTGAAGGAGAAGCCTAAACTATCGAAGGCAAAATCGATTCACGCT
GGTATGGCACCTATGACAGCCGAGGTCGAACAAGACCTGGAGGACTACAT
CAACGAGCAGCGTAGGGAACATCGCGGCTGCGGAAGCATGGAAGTCATGA
ACAAGCTGCTTGAGCTGAAGCCTGACGCTCTCGGCGGGTTGACAGCCGCT
GCGTCGGCGGAGGAGACATTGGCTTCCAGGACCAAGTTCAAGACCTGGTA
CCATCGTTTCCGCGAACGCCGCGGTTTCAGCATCCGCCGGCGCACTAGCC
CGACGGGGTACGAGGGTTTGGCGTTCGCGACGTTGATGAAGCTTCGTACG
GCCCTCTTGGAGCGCGCTGGTGAGATCTACGCTCGGCGCAACCCATCTGC
ATCTGGCGAGAGCCCCATCAAAGGGAAGGACCTCAGTCCCGTGCAGCTAG
AGTCGGCTGCCGCGGAAGTGTTCGAAGAACTCGGCAATATGGACCAAACG
CCAGTCCAGCAGGAGATGCCAGTGGAAACAACTCTGGAGAAGCGCGGTGC
GAAGAGGATGCTCGCATCAGCACGGGAGGTGAGACTTCACCTTTGAATAC
CCATACCAATTACTGTATGTGCCTTACCAATGCCTGTGTTTGCCTATAAT
TTTTAGCATCGACCGCGCTATGTGTGTGTATTCGTCCCGTCTCTGCTGGC
GCCAGTCGATGGGTCTTCAGTTTTTTGTTTCCTCTTTGGTAAACATCTTA
TGTATCAGCCGGGATCGCCCAGCTTTTTTCAATATACATATATTTGTTTT
CGTGCCCCACCTTTCCCCCTGCGGATGTTACTGAATATCGCTTTTGCGCT
TGTATTGCGTTCGCGTGCTTGTGTAGTTTCTTGATTCGTGCTGTCGAAGT
GTATTACACCAGCCTCAAGCTTGAGTCGCTGAACATCGAAAGCTTCCCAC
TCTCCCCGCCGTACACTTGCTCTCCCTCTCTTCCCCGCAGGAAAAGAGCA
AGAACATTCCACGCCATATCTTGCTGTCATGGCGGACGGTGGCAAGGTTC
CCCTGCGAATCGTCTTCAAGGGCAAGCCATTCATTTCGCCTATTATAGCA
CGGCGGGGCGGGGAACGAACACTCAGCCCCGCAAGGGCTCCATTGCGGCC
GAGGTCCTTCCTGCCAACCGCACCAAGTTCGGGTACCCTGTGTCCGGCAT
GTCTTTCGGCGTGCAGGAGAAAAGCTGGTGTGAATCGCGCGAGTGCACCC
TGTGGCTGTCCGAAAGCTGTAGGTTTCGACCTAACCACGGGAGCGTCATC
AAGCAGCGGCACAGCATCTTGGTGTTGGACGAGTTCAGGTGCCACCGTAG
CGAATCCTTCATCGAGGACCTCCTGGAGGACAAACACCACCGTCATCCTC
ATCCCGAGCGGGTTGACTCCTCTTCTTCAGCCGCTGGATCGCATGCTGAG
AGATGAAGCAACTGATGCGGGGGCGGTACACACAGTACATGGCGTCGGCG
ATCGCAGACCCCAAGACGGGCAAGCTTCAACCGCCGGGGCGTGGGCTCGT
GTCGACGTGGTGCTAGGAGTCATGGACAGCTATCACCCCCGAAACGGTCA
AGATGTGCTTCAAGGTGTGCGGCCTCACGCTTGCGCTCGACGGTAGCGAG
GACGACGCGTGGTGCACCCACAACTTTGGTGAAGGCTACCGTGAGGTTCT
AGTCCAG back to topCoding sequence (CDS) from alignment at Scaffold_63:554247..556203- >EsuBft1021_4a-0001 ID=EsuBft1021_4a-0001|Name=EsuBft1021_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=909bp|location=Sequence derived from alignment at Scaffold_63:554247..556203- (Ectocarpus subulatus male Bft15b)
ATGCTTGCGGCAAACGACCCCACACCATCACACCACAAAAAGCGCAAACA
CCCCGAGCCTGACTTCGCCAACGAGAGGACCGGAGGCAAGAAAGGGAGCT
ACTCCATGAGATTCAAACTGAAAGCAGCCACATTCACGCGAGTCCTTTGC
GAGGATGGTCAACCAGTGGGAAATTCCGGAGCGGCGAACGTTCTCGGGGT
GGATCGTAGGCGCATCATCACCTGGGTCGGCGAGGAGGCAACAATGAAGA
AGCTGGTGAAGGAGAAGCCTAAACTATCGAAGGCAAAATCGATTCACGCT
GGTATGGCACCTATGACAGCCGAGGTCGAACAAGACCTGGAGGACTACAT
CAACGAGCAGCGTAGGGAACATCGCGGCTGCGGAAGCATGGAAGTCATGA
ACAAGCTGCTTGAGCTGAAGCCTGACGCTCTCGGCGGGTTGACAGCCGCT
GCGTCGGCGGAGGAGACATTGGCTTCCAGGACCAAGTTCAAGACCTGGTA
CCATCGTTTCCGCGAACGCCGCGGTTTCAGCATCCGCCGGCGCACTAGCC
CGACGGGGTACGAGGGTTTGGCGTTCGCGACGTTGATGAAGCTTCGTACG
GCCCTCTTGGAGCGCGCTGGTGAGATCTACGCTCGGCGCAACCCATCTGC
ATCTGGCGAGAGCCCCATCAAAGGGAAGGACCTCAGTCCCGTGCAGCTAG
AGTCGGCTGCCGCGGAAGTGTTCGAAGAACTCGGCAATATGGACCAAACG
CCAGTCCAGCAGGAGATGCCAGTGGAAACAACTCTGGAGAAGCGCGGTGC
GAAGAGGATGCTCGCATCAGCACGGGAGTACATGGCGTCGGCGATCGCAG
ACCCCAAGACGGGCAAGCTTCAACCGCCGGGGCGTGGGCTCGTGTCGACG
TGGTGCTAG back to top
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