EsuBft1021_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1021_4a-0001
Unique Name	EsuBft1021_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_63	contig	Scaffold_63:554247..556203 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FXD3
ProteomeId	EsuBft1021_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	105
Hectar predicted targeting category	other localisation
Evalue	3.48e-29
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Preferred name	POGK
KEGG ko	ko:K09228
Description	DNA binding
COG category	CH
BRITE	ko00000,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1021_4a	EsuBft1021_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_63 554247..556203 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1021_4a-0001-exon	EsuBft1021_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_63 554247..554468 -
EsuBft1021_4a-0001-exon	agat-exon-111380	Ectocarpus subulatus male Bft15b	exon	Scaffold_63 555376..556203 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1021_4a-0001-exon	agat-three_prime_utr-218	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_63 554247..554387 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1021_4a-0001-cds	EsuBft1021_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_63 554388..554468 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1021_4a-0001	EsuBft1021_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_63 554388..556203 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_63:554247..556203-
coding sequence from alignment at Scaffold_63:554247..556203-

spliced messenger RNA

>EsuBft1021_4a-0001 ID=EsuBft1021_4a-0001|Name=EsuBft1021_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1050bp|location=Sequence derived from alignment at Scaffold_63:554247..556203- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCGGCAAACGACCCCACACCATCACACCACAAAAAGCGCAAACA
CCCCGAGCCTGACTTCGCCAACGAGAGGACCGGAGGCAAGAAAGGGAGCT
ACTCCATGAGATTCAAACTGAAAGCAGCCACATTCACGCGAGTCCTTTGC
GAGGATGGTCAACCAGTGGGAAATTCCGGAGCGGCGAACGTTCTCGGGGT
GGATCGTAGGCGCATCATCACCTGGGTCGGCGAGGAGGCAACAATGAAGA
AGCTGGTGAAGGAGAAGCCTAAACTATCGAAGGCAAAATCGATTCACGCT
GGTATGGCACCTATGACAGCCGAGGTCGAACAAGACCTGGAGGACTACAT
CAACGAGCAGCGTAGGGAACATCGCGGCTGCGGAAGCATGGAAGTCATGA
ACAAGCTGCTTGAGCTGAAGCCTGACGCTCTCGGCGGGTTGACAGCCGCT
GCGTCGGCGGAGGAGACATTGGCTTCCAGGACCAAGTTCAAGACCTGGTA
CCATCGTTTCCGCGAACGCCGCGGTTTCAGCATCCGCCGGCGCACTAGCC
CGACGGGGTACGAGGGTTTGGCGTTCGCGACGTTGATGAAGCTTCGTACG
GCCCTCTTGGAGCGCGCTGGTGAGATCTACGCTCGGCGCAACCCATCTGC
ATCTGGCGAGAGCCCCATCAAAGGGAAGGACCTCAGTCCCGTGCAGCTAG
AGTCGGCTGCCGCGGAAGTGTTCGAAGAACTCGGCAATATGGACCAAACG
CCAGTCCAGCAGGAGATGCCAGTGGAAACAACTCTGGAGAAGCGCGGTGC
GAAGAGGATGCTCGCATCAGCACGGGAGTACATGGCGTCGGCGATCGCAG
ACCCCAAGACGGGCAAGCTTCAACCGCCGGGGCGTGGGCTCGTGTCGACG
TGGTGCTAGGAGTCATGGACAGCTATCACCCCCGAAACGGTCAAGATGTG
CTTCAAGGTGTGCGGCCTCACGCTTGCGCTCGACGGTAGCGAGGACGACG
CGTGGTGCACCCACAACTTTGGTGAAGGCTACCGTGAGGTTCTAGTCCAG

protein sequence of EsuBft1021_4a-0001

>EsuBft1021_4 ID=EsuBft1021_4|Name=EsuBft1021_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=302bp
MLAANDPTPSHHKKRKHPEPDFANERTGGKKGSYSMRFKLKAATFTRVLC
EDGQPVGNSGAANVLGVDRRRIITWVGEEATMKKLVKEKPKLSKAKSIHA
GMAPMTAEVEQDLEDYINEQRREHRGCGSMEVMNKLLELKPDALGGLTAA
ASAEETLASRTKFKTWYHRFRERRGFSIRRRTSPTGYEGLAFATLMKLRT
ALLERAGEIYARRNPSASGESPIKGKDLSPVQLESAAAEVFEELGNMDQT
PVQQEMPVETTLEKRGAKRMLASAREYMASAIADPKTGKLQPPGRGLVST
WC

mRNA from alignment at Scaffold_63:554247..556203-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1021_4a-0001 ID=EsuBft1021_4a-0001|Name=EsuBft1021_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1957bp|location=Sequence derived from alignment at Scaffold_63:554247..556203- (Ectocarpus subulatus male Bft15b)
ATGCTTGCGGCAAACGACCCCACACCATCACACCACAAAAAGCGCAAACA
CCCCGAGCCTGACTTCGCCAACGAGAGGACCGGAGGCAAGAAAGGGAGCT
ACTCCATGAGATTCAAACTGAAAGCAGCCACATTCACGCGAGTCCTTTGC
GAGGATGGTCAACCAGTGGGAAATTCCGGAGCGGCGAACGTTCTCGGGGT
GGATCGTAGGCGCATCATCACCTGGGTCGGCGAGGAGGCAACAATGAAGA
AGCTGGTGAAGGAGAAGCCTAAACTATCGAAGGCAAAATCGATTCACGCT
GGTATGGCACCTATGACAGCCGAGGTCGAACAAGACCTGGAGGACTACAT
CAACGAGCAGCGTAGGGAACATCGCGGCTGCGGAAGCATGGAAGTCATGA
ACAAGCTGCTTGAGCTGAAGCCTGACGCTCTCGGCGGGTTGACAGCCGCT
GCGTCGGCGGAGGAGACATTGGCTTCCAGGACCAAGTTCAAGACCTGGTA
CCATCGTTTCCGCGAACGCCGCGGTTTCAGCATCCGCCGGCGCACTAGCC
CGACGGGGTACGAGGGTTTGGCGTTCGCGACGTTGATGAAGCTTCGTACG
GCCCTCTTGGAGCGCGCTGGTGAGATCTACGCTCGGCGCAACCCATCTGC
ATCTGGCGAGAGCCCCATCAAAGGGAAGGACCTCAGTCCCGTGCAGCTAG
AGTCGGCTGCCGCGGAAGTGTTCGAAGAACTCGGCAATATGGACCAAACG
CCAGTCCAGCAGGAGATGCCAGTGGAAACAACTCTGGAGAAGCGCGGTGC
GAAGAGGATGCTCGCATCAGCACGGGAGGTGAGACTTCACCTTTGAATAC
CCATACCAATTACTGTATGTGCCTTACCAATGCCTGTGTTTGCCTATAAT
TTTTAGCATCGACCGCGCTATGTGTGTGTATTCGTCCCGTCTCTGCTGGC
GCCAGTCGATGGGTCTTCAGTTTTTTGTTTCCTCTTTGGTAAACATCTTA
TGTATCAGCCGGGATCGCCCAGCTTTTTTCAATATACATATATTTGTTTT
CGTGCCCCACCTTTCCCCCTGCGGATGTTACTGAATATCGCTTTTGCGCT
TGTATTGCGTTCGCGTGCTTGTGTAGTTTCTTGATTCGTGCTGTCGAAGT
GTATTACACCAGCCTCAAGCTTGAGTCGCTGAACATCGAAAGCTTCCCAC
TCTCCCCGCCGTACACTTGCTCTCCCTCTCTTCCCCGCAGGAAAAGAGCA
AGAACATTCCACGCCATATCTTGCTGTCATGGCGGACGGTGGCAAGGTTC
CCCTGCGAATCGTCTTCAAGGGCAAGCCATTCATTTCGCCTATTATAGCA
CGGCGGGGCGGGGAACGAACACTCAGCCCCGCAAGGGCTCCATTGCGGCC
GAGGTCCTTCCTGCCAACCGCACCAAGTTCGGGTACCCTGTGTCCGGCAT
GTCTTTCGGCGTGCAGGAGAAAAGCTGGTGTGAATCGCGCGAGTGCACCC
TGTGGCTGTCCGAAAGCTGTAGGTTTCGACCTAACCACGGGAGCGTCATC
AAGCAGCGGCACAGCATCTTGGTGTTGGACGAGTTCAGGTGCCACCGTAG
CGAATCCTTCATCGAGGACCTCCTGGAGGACAAACACCACCGTCATCCTC
ATCCCGAGCGGGTTGACTCCTCTTCTTCAGCCGCTGGATCGCATGCTGAG
AGATGAAGCAACTGATGCGGGGGCGGTACACACAGTACATGGCGTCGGCG
ATCGCAGACCCCAAGACGGGCAAGCTTCAACCGCCGGGGCGTGGGCTCGT
GTCGACGTGGTGCTAGGAGTCATGGACAGCTATCACCCCCGAAACGGTCA
AGATGTGCTTCAAGGTGTGCGGCCTCACGCTTGCGCTCGACGGTAGCGAG
GACGACGCGTGGTGCACCCACAACTTTGGTGAAGGCTACCGTGAGGTTCT
AGTCCAG

Coding sequence (CDS) from alignment at Scaffold_63:554247..556203-

>EsuBft1021_4a-0001 ID=EsuBft1021_4a-0001|Name=EsuBft1021_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=909bp|location=Sequence derived from alignment at Scaffold_63:554247..556203- (Ectocarpus subulatus male Bft15b)
ATGCTTGCGGCAAACGACCCCACACCATCACACCACAAAAAGCGCAAACA
CCCCGAGCCTGACTTCGCCAACGAGAGGACCGGAGGCAAGAAAGGGAGCT
ACTCCATGAGATTCAAACTGAAAGCAGCCACATTCACGCGAGTCCTTTGC
GAGGATGGTCAACCAGTGGGAAATTCCGGAGCGGCGAACGTTCTCGGGGT
GGATCGTAGGCGCATCATCACCTGGGTCGGCGAGGAGGCAACAATGAAGA
AGCTGGTGAAGGAGAAGCCTAAACTATCGAAGGCAAAATCGATTCACGCT
GGTATGGCACCTATGACAGCCGAGGTCGAACAAGACCTGGAGGACTACAT
CAACGAGCAGCGTAGGGAACATCGCGGCTGCGGAAGCATGGAAGTCATGA
ACAAGCTGCTTGAGCTGAAGCCTGACGCTCTCGGCGGGTTGACAGCCGCT
GCGTCGGCGGAGGAGACATTGGCTTCCAGGACCAAGTTCAAGACCTGGTA
CCATCGTTTCCGCGAACGCCGCGGTTTCAGCATCCGCCGGCGCACTAGCC
CGACGGGGTACGAGGGTTTGGCGTTCGCGACGTTGATGAAGCTTCGTACG
GCCCTCTTGGAGCGCGCTGGTGAGATCTACGCTCGGCGCAACCCATCTGC
ATCTGGCGAGAGCCCCATCAAAGGGAAGGACCTCAGTCCCGTGCAGCTAG
AGTCGGCTGCCGCGGAAGTGTTCGAAGAACTCGGCAATATGGACCAAACG
CCAGTCCAGCAGGAGATGCCAGTGGAAACAACTCTGGAGAAGCGCGGTGC
GAAGAGGATGCTCGCATCAGCACGGGAGTACATGGCGTCGGCGATCGCAG
ACCCCAAGACGGGCAAGCTTCAACCGCCGGGGCGTGGGCTCGTGTCGACG
TGGTGCTAG