EsuBft1020_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1020_4a-0001
Unique NameEsuBft1020_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:147698..148209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1020_4
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Notetransposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length512
Evalue2.33e-29
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_4aEsuBft1020_4aEctocarpus subulatus male Bft15bgeneScaffold_581 147698..148209 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_4a-0001-exonEsuBft1020_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 147698..148209 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_4a-0001-exonagat-five_prime_utr-129Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_581 147698..147698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_4a-0001-cdsEsuBft1020_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 147699..148022 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_4a-0001-exonagat-three_prime_utr-215Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_581 148023..148209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_4a-0001EsuBft1020_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 147699..148022 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1020_4a-0001 ID=EsuBft1020_4a-0001|Name=EsuBft1020_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=512bp|location=Sequence derived from alignment at Scaffold_581:147698..148209+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GATGCTGTACAAAAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGA
TTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAAC
CGTCTAAGCGCCTTCTGCGAAGTCAACAACATCCTCCCGGAGGAACAGTG
CGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCC
GCCTCCAGGAGCTTGGTCGGAGAAAGAAAATACCGCGCAATATGTGCTTC
GTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAA
GGTGCTGGCCAGGGCCGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAT
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protein sequence of EsuBft1020_4a-0001

>EsuBft1020_4 ID=EsuBft1020_4|Name=EsuBft1020_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=108bp
MLYKKGDRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEVNNILPEEQC
GFRPGRSTVDMLFVVRRLQELGRRKKIPRNMCFVDLNKAYDSVDREMLWK
VLARAGXX
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mRNA from alignment at Scaffold_581:147698..148209+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1020_4a-0001 ID=EsuBft1020_4a-0001|Name=EsuBft1020_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=512bp|location=Sequence derived from alignment at Scaffold_581:147698..148209+ (Ectocarpus subulatus male Bft15b)
GATGCTGTACAAAAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGA
TTTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAAC
CGTCTAAGCGCCTTCTGCGAAGTCAACAACATCCTCCCGGAGGAACAGTG
CGGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCC
GCCTCCAGGAGCTTGGTCGGAGAAAGAAAATACCGCGCAATATGTGCTTC
GTCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAA
GGTGCTGGCCAGGGCCGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAT
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Coding sequence (CDS) from alignment at Scaffold_581:147698..148209+

>EsuBft1020_4a-0001 ID=EsuBft1020_4a-0001|Name=EsuBft1020_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=324bp|location=Sequence derived from alignment at Scaffold_581:147698..148209+ (Ectocarpus subulatus male Bft15b)
ATGCTGTACAAAAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGAT
TTCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACC
GTCTAAGCGCCTTCTGCGAAGTCAACAACATCCTCCCGGAGGAACAGTGC
GGATTTCGACCCGGGCGATCCACCGTCGACATGCTGTTCGTCGTGCGCCG
CCTCCAGGAGCTTGGTCGGAGAAAGAAAATACCGCGCAATATGTGCTTCG
TCGACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAG
GTGCTGGCCAGGGCCGGGATNNNN
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