EsuBft1020_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1020_3a-0001
Unique Name	EsuBft1020_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_581	contig	Scaffold_581:139130..142540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1020_3
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	334
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1020_3a	EsuBft1020_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_581 139130..142540 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1020_3a-0001-exon	EsuBft1020_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 139130..140363 +
EsuBft1020_3a-0001-exon	agat-exon-58014	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 140429..142540 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1020_3a-0001-exon	agat-five_prime_utr-128	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_581 139130..140351 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1020_3a-0001-cds	EsuBft1020_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_581 140352..140363 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1020_3a-0001-exon	agat-three_prime_utr-214	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_581 141524..142540 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1020_3a-0001	EsuBft1020_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_581 140352..141523 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_581:139130..142540+
coding sequence from alignment at Scaffold_581:139130..142540+

spliced messenger RNA

>EsuBft1020_3a-0001 ID=EsuBft1020_3a-0001|Name=EsuBft1020_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3346bp|location=Sequence derived from alignment at Scaffold_581:139130..142540+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTGTTTCCACTAGCGACACTCCCCCACCATTCGGTAGCAGCAGTAGGAG
GGGGTGGAATTTGAGACCGGCTACGGAACGCTCCACTCTCAATTCCCATC
GAACCTGAGTTTACTGCAGCAACAAAGGAACGATTATCACCTGCATGCGG
GTTCAGGTCAGAGCCTAGAAGACTACCAGTACCAAGCCGCATACTTGAAG
CGCCAAGGCTTTGGACGTTGCTATCCGTACCTCCCGCACTTCCCGAGACG
CCAAGTCCTTGGGCAGCAACACCCCTACTTGCTCTCGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATATGGCTCCCAAGGGTCTTTTCACGGGAG
GCGGCGGAATTTCGAAACTCGCCGCGTCCCACGTAAACCCACCACAGCTC
AAAAAAGGGGCCGAGCAGTACCCGGGGTGGAGGCAGGATATGATCGTGCA
GGCAGGCATTCTCGACATAGGCGATGTGTTCTCCGGCGGCGGGGTGCTGC
CGGACATCAACAAGCCACAGACCGCCCTTCTCGAGCAGGGGTTTTCGTAT
GCAGCAATCCGCAAGACGTATCTGGCGTGGAATTTCCTCTCTGCCGCGTT
GACTACTGAGACGGACAAAGCCATCCTCCGTCGTTGCACGAACCCAAGGG
AAGCCCTGCGGCAACTAGATGCGGCATACCTGCCGGAGACACAGGGTGCA
CAGCAGCAGCTTTTCAGAGAGTTCCAGCAGTACCAGACTCCTCGGAAGGA
GAACCCCGTCGCCAGTTTGAACAAGCTCATGGGTATGGCCATCATGATGC
AGCAAGGGGGCGGAGCCACGGTAAACGACCAGTTCGTGTTCGCCCGACTT
ATCGATTCGCTGCCCAACCCCGAATACGAAGTCACCAAGCAAACCTTGTC
GGTGGTCCAACCGCTGACGAGGGATATCCTTGTACAACAGCTCTCAACCC
GATTTAACCTTCTCACCGAGGAATGGAGGAAGGAAGGAGAAAAAGGATCC
GGGGGGGAGCAGGCGTACATTGCGGGTGACGGCACCGGGAAGGGGCGGCA
GGCTGGCGGCGGCCGCGGCAGTAAGAGCAACGGCCGTGGCAGCAAGAAGA
AGGCGGGGACGGACGACCGGGTCGACCACCGGAGGTGTTTCCGGTGCAAC
CACCGCGGGCATAGGAAGCCCGACTGCACCACGAAGGAGGAGGACTTCCT
GGAGCAGTGCGACACGTGTTCGGGCTTTGGGCACAACAGCGAGAAGTGTG
CGACACCCACGGAGGAAGCGTGCATGGCGGTAGTGGAGCATGCCAACTTC
GCGGTGGTGAGTTTCGAAGAGCAGTACGACCGCGCGGAGGAACTGTGCAA
GATGGATCCTAGTTGGGAGAAGCTGACCGAAGACGAGAAGGAAGCAAAGG
TGCAGGAAGTGGTAACTGAAAGTTTCTAGGGTGGACAGGTGGTGTTGCTA
TTACGGTACGGTAGGTTGGCCGTAGGCCCTCAGCGCCGCTGATTTGCGGT
GGGGGGGCCGGACGAAGTCGCGCGGAGGTGGCGCGCAAGCACAGCATGGA
CAGAGGGGCCATGAAAGTCGCACAATTGACGGTGCGCATTCTATCTGCGG
GATAGGAGGCGGTGGAAAGCGGGGGCGGTAGAGTGACCGTTGGGCAGAAT
AGCCGGAGACACCCTACCATGGATTGACCGCGCGACGGCGTGTGGGGGGT
GGGCGCCGCACTCGCTTGACGCGGGCGGTGTTTTCTCTAAGTTGATCACA
GGCACGGCAGAGTGGCCGTGCACGCCCTACCACGGTTGACACGCGCGACG
GCGCGTCGGGGGGTGGGTGCCGCATCACGCGTGAAGCGGGCGGCATTTTT
CAACCACAGCACGGACGGAGGGGCCGTGGCTGTCCTGCCTTGCCGTTTGG
AGCCGGGGGGGTAGCACTTGAAGTCGCGCGGAGATGGCGCGCAACCCAGC
ACGGACGGACGGGCCATGGCTGTTCTGCCTCGTCGTTGGAGCGGGGAGGG
GCAGCATTTTTCGTCGCGCGGAGGTGGCGCGCAGCCATCAGCCGGAGGTG
GGCATTTGGGGTGGGGCACAGCGATATGGCGGTGTCATCAAAGTCGCGTG
GAGAGTCGCCGCGCGCATTTCATAAGCCGGGAAGGGACGATGGAGATCGG
GATCGGCAGGATCGACTTGTGGACGATCGAGGGCGCGCTTCATCTTCACG
ATTGGAACTGGTGGAGTGGACGGGCAAGCTTGATAATTTTTTCTTGTGTT
TTTCTTTTTTCGACGCCAGTTTACGGGTGTCGGTGAAATCCGAATTTTTC
AAGCGTTCTTGATCTTGTTTCGTTTTTTTTTTGTCGTTTCTTTTGACGGT
AATTTTTTTGGTTGCCGAATCCAGTGGTAATTCTCACGTATACGTGTTGT
CGTTATACATCGTGACGTACGCTTTGCGCTTCTTGACCATTTTTTG

protein sequence of EsuBft1020_3a-0001

>EsuBft1020_3 ID=EsuBft1020_3|Name=EsuBft1020_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=368bp
MAPKGLFTGGGGISKLAASHVNPPQLKKGAEQYPGWRQDMIVQAGILDIG
DVFSGGGVLPDINKPQTALLEQGFSYAAIRKTYLAWNFLSAALTTETDKA
ILRRCTNPREALRQLDAAYLPETQGAQQQLFREFQQYQTPRKENPVASLN
KLMGMAIMMQQGGGATVNDQFVFARLIDSLPNPEYEVTKQTLSVVQPLTR
DILVQQLSTRFNLLTEEWRKEGEKGSGGEQAYIAGDGTGKGRQAGGGRGS
KSNGRGSKKKAGTDDRVDHRRCFRCNHRGHRKPDCTTKEEDFLEQCDTCS
GFGHNSEKCATPTEEACMAVVEHANFAVVSFEEQYDRAEELCKMDPSWEK
LTEDEKEAKVQEVVTESF

mRNA from alignment at Scaffold_581:139130..142540+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1020_3a-0001 ID=EsuBft1020_3a-0001|Name=EsuBft1020_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3411bp|location=Sequence derived from alignment at Scaffold_581:139130..142540+ (Ectocarpus subulatus male Bft15b)
GGTGTTTCCACTAGCGACACTCCCCCACCATTCGGTAGCAGCAGTAGGAG
GGGGTGGAATTTGAGACCGGCTACGGAACGCTCCACTCTCAATTCCCATC
GAACCTGAGTTTACTGCAGCAACAAAGGAACGATTATCACCTGCATGCGG
GTTCAGGTCAGAGCCTAGAAGACTACCAGTACCAAGCCGCATACTTGAAG
CGCCAAGGCTTTGGACGTTGCTATCCGTACCTCCCGCACTTCCCGAGACG
CCAAGTCCTTGGGCAGCAACACCCCTACTTGCTCTCGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNATATGGCTCCCAAGGTGAGGCAGCCGCAAC
CGGCGGTGGCGTTGGTGGTGTTTTCGTCAGCGGTGATGTCGCTGGTGAGG
GTCTTTTCACGGGAGGCGGCGGAATTTCGAAACTCGCCGCGTCCCACGTA
AACCCACCACAGCTCAAAAAAGGGGCCGAGCAGTACCCGGGGTGGAGGCA
GGATATGATCGTGCAGGCAGGCATTCTCGACATAGGCGATGTGTTCTCCG
GCGGCGGGGTGCTGCCGGACATCAACAAGCCACAGACCGCCCTTCTCGAG
CAGGGGTTTTCGTATGCAGCAATCCGCAAGACGTATCTGGCGTGGAATTT
CCTCTCTGCCGCGTTGACTACTGAGACGGACAAAGCCATCCTCCGTCGTT
GCACGAACCCAAGGGAAGCCCTGCGGCAACTAGATGCGGCATACCTGCCG
GAGACACAGGGTGCACAGCAGCAGCTTTTCAGAGAGTTCCAGCAGTACCA
GACTCCTCGGAAGGAGAACCCCGTCGCCAGTTTGAACAAGCTCATGGGTA
TGGCCATCATGATGCAGCAAGGGGGCGGAGCCACGGTAAACGACCAGTTC
GTGTTCGCCCGACTTATCGATTCGCTGCCCAACCCCGAATACGAAGTCAC
CAAGCAAACCTTGTCGGTGGTCCAACCGCTGACGAGGGATATCCTTGTAC
AACAGCTCTCAACCCGATTTAACCTTCTCACCGAGGAATGGAGGAAGGAA
GGAGAAAAAGGATCCGGGGGGGAGCAGGCGTACATTGCGGGTGACGGCAC
CGGGAAGGGGCGGCAGGCTGGCGGCGGCCGCGGCAGTAAGAGCAACGGCC
GTGGCAGCAAGAAGAAGGCGGGGACGGACGACCGGGTCGACCACCGGAGG
TGTTTCCGGTGCAACCACCGCGGGCATAGGAAGCCCGACTGCACCACGAA
GGAGGAGGACTTCCTGGAGCAGTGCGACACGTGTTCGGGCTTTGGGCACA
ACAGCGAGAAGTGTGCGACACCCACGGAGGAAGCGTGCATGGCGGTAGTG
GAGCATGCCAACTTCGCGGTGGTGAGTTTCGAAGAGCAGTACGACCGCGC
GGAGGAACTGTGCAAGATGGATCCTAGTTGGGAGAAGCTGACCGAAGACG
AGAAGGAAGCAAAGGTGCAGGAAGTGGTAACTGAAAGTTTCTAGGGTGGA
CAGGTGGTGTTGCTATTACGGTACGGTAGGTTGGCCGTAGGCCCTCAGCG
CCGCTGATTTGCGGTGGGGGGGCCGGACGAAGTCGCGCGGAGGTGGCGCG
CAAGCACAGCATGGACAGAGGGGCCATGAAAGTCGCACAATTGACGGTGC
GCATTCTATCTGCGGGATAGGAGGCGGTGGAAAGCGGGGGCGGTAGAGTG
ACCGTTGGGCAGAATAGCCGGAGACACCCTACCATGGATTGACCGCGCGA
CGGCGTGTGGGGGGTGGGCGCCGCACTCGCTTGACGCGGGCGGTGTTTTC
TCTAAGTTGATCACAGGCACGGCAGAGTGGCCGTGCACGCCCTACCACGG
TTGACACGCGCGACGGCGCGTCGGGGGGTGGGTGCCGCATCACGCGTGAA
GCGGGCGGCATTTTTCAACCACAGCACGGACGGAGGGGCCGTGGCTGTCC
TGCCTTGCCGTTTGGAGCCGGGGGGGTAGCACTTGAAGTCGCGCGGAGAT
GGCGCGCAACCCAGCACGGACGGACGGGCCATGGCTGTTCTGCCTCGTCG
TTGGAGCGGGGAGGGGCAGCATTTTTCGTCGCGCGGAGGTGGCGCGCAGC
CATCAGCCGGAGGTGGGCATTTGGGGTGGGGCACAGCGATATGGCGGTGT
CATCAAAGTCGCGTGGAGAGTCGCCGCGCGCATTTCATAAGCCGGGAAGG
GACGATGGAGATCGGGATCGGCAGGATCGACTTGTGGACGATCGAGGGCG
CGCTTCATCTTCACGATTGGAACTGGTGGAGTGGACGGGCAAGCTTGATA
ATTTTTTCTTGTGTTTTTCTTTTTTCGACGCCAGTTTACGGGTGTCGGTG
AAATCCGAATTTTTCAAGCGTTCTTGATCTTGTTTCGTTTTTTTTTTGTC
GTTTCTTTTGACGGTAATTTTTTTGGTTGCCGAATCCAGTGGTAATTCTC
ACGTATACGTGTTGTCGTTATACATCGTGACGTACGCTTTGCGCTTCTTG
ACCATTTTTTG

Coding sequence (CDS) from alignment at Scaffold_581:139130..142540+

>EsuBft1020_3a-0001 ID=EsuBft1020_3a-0001|Name=EsuBft1020_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1107bp|location=Sequence derived from alignment at Scaffold_581:139130..142540+ (Ectocarpus subulatus male Bft15b)
ATGGCTCCCAAGGGTCTTTTCACGGGAGGCGGCGGAATTTCGAAACTCGC
CGCGTCCCACGTAAACCCACCACAGCTCAAAAAAGGGGCCGAGCAGTACC
CGGGGTGGAGGCAGGATATGATCGTGCAGGCAGGCATTCTCGACATAGGC
GATGTGTTCTCCGGCGGCGGGGTGCTGCCGGACATCAACAAGCCACAGAC
CGCCCTTCTCGAGCAGGGGTTTTCGTATGCAGCAATCCGCAAGACGTATC
TGGCGTGGAATTTCCTCTCTGCCGCGTTGACTACTGAGACGGACAAAGCC
ATCCTCCGTCGTTGCACGAACCCAAGGGAAGCCCTGCGGCAACTAGATGC
GGCATACCTGCCGGAGACACAGGGTGCACAGCAGCAGCTTTTCAGAGAGT
TCCAGCAGTACCAGACTCCTCGGAAGGAGAACCCCGTCGCCAGTTTGAAC
AAGCTCATGGGTATGGCCATCATGATGCAGCAAGGGGGCGGAGCCACGGT
AAACGACCAGTTCGTGTTCGCCCGACTTATCGATTCGCTGCCCAACCCCG
AATACGAAGTCACCAAGCAAACCTTGTCGGTGGTCCAACCGCTGACGAGG
GATATCCTTGTACAACAGCTCTCAACCCGATTTAACCTTCTCACCGAGGA
ATGGAGGAAGGAAGGAGAAAAAGGATCCGGGGGGGAGCAGGCGTACATTG
CGGGTGACGGCACCGGGAAGGGGCGGCAGGCTGGCGGCGGCCGCGGCAGT
AAGAGCAACGGCCGTGGCAGCAAGAAGAAGGCGGGGACGGACGACCGGGT
CGACCACCGGAGGTGTTTCCGGTGCAACCACCGCGGGCATAGGAAGCCCG
ACTGCACCACGAAGGAGGAGGACTTCCTGGAGCAGTGCGACACGTGTTCG
GGCTTTGGGCACAACAGCGAGAAGTGTGCGACACCCACGGAGGAAGCGTG
CATGGCGGTAGTGGAGCATGCCAACTTCGCGGTGGTGAGTTTCGAAGAGC
AGTACGACCGCGCGGAGGAACTGTGCAAGATGGATCCTAGTTGGGAGAAG
CTGACCGAAGACGAGAAGGAAGCAAAGGTGCAGGAAGTGGTAACTGAAAG
TTTCTAG