EsuBft101_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft101_5a-0001
Unique Name	EsuBft101_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_627	contig	Scaffold_627:490172..493559 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft101_5
Protein domains	IPR000048
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	181
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft101_5a	EsuBft101_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_627 490172..493559 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft101_5a-0001	EsuBft101_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_627 490172..493559 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft101_5a-0001-exon	agat-exon-23801	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 490172..490356 +
EsuBft101_5a-0001-exon	EsuBft101_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 490553..491398 +
EsuBft101_5a-0001-exon	agat-exon-23804	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 491906..491969 +
EsuBft101_5a-0001-exon	agat-exon-23800	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 492179..492556 +
EsuBft101_5a-0001-exon	agat-exon-23802	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 492854..493023 +
EsuBft101_5a-0001-exon	agat-exon-23803	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 493385..493559 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft101_5a-0001-cds	EsuBft101_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_627 490172..490356 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_627:490172..493559+
coding sequence from alignment at Scaffold_627:490172..493559+

spliced messenger RNA

>EsuBft101_5a-0001 ID=EsuBft101_5a-0001|Name=EsuBft101_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1818bp|location=Sequence derived from alignment at Scaffold_627:490172..493559+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGAGAGGTGAGCCTAGATCAGAAAGTCACCGATGGCTGCAGACG
ACGGGTGGGTAACCATCGACAGACTCCAATCGCTGCTTTCGCCAAGCGGG
TCCACCGATGTGCTCCGTTAGGGCTTATGGTCGTCGAGCCAGACTACGTG
GAAGGTTTTTTACCTGCACCCTTGAGACCAAAAAGGCCACGGCGATCACT
TGCTGCCAAGCTCAAGGTCCAACCGATCCCGTTCGACGGGAGCCCCAATT
CCCTACAGCCTGCAACCGAACCTGGAGCCGGACGCGCCTCCTGTCAAAGT
ATTGTGGAATCAATGCAACAGCGGCAAGGCGCTTGCGATGATCGTGGTGA
GAGGCTTGGCGACGAGTCAAGCGGGTGCGGCATCAATGGTTCCCCTCACG
GCACTGCCATTTGTAGCCCATCCCTCGACATACTGACGTACGAGTACCGA
GGACCAACGTCGTCAATACCGGAAAATCAGCCGTTACAGTCAACACCGTC
AGCCATGGACGTCAGAACTCTTGCTTCCCCTTCGTTGGAGCCGATAGGTG
GGACGAAAGTGGCGAAAGGGCATGGTGACTTGGAAATGACATCGGCGACC
CTTGGTAGCTCAAGCCGAGGTAAGCAAGTGACCGATGGGGGGACTGCGAT
GGCGTCGTTCGAAGGTGAAGGCGGGAAGGCCCCAACAAGAAGCAACGAGG
GAGCGATATTTCAAAGGAACACAACACACATGCGCGAAACTACGGGAGGT
GCTGCTATTGGGTCTGGCAGAGGGTCAGAGGCGGAGGAGGAAAACGAAGG
AGAAAACGACCCGCATATAGCGGACGGTAGCGATGCTGGGGGACGCTTTG
CTACATGGCCAGCGTCAGAAATGATCAAAGGGGCTAAAACGACATCGACG
ATGACAAAGCAGGACTTCAGGGACGTGGTCATACCGATGGCCCTTCCCGG
GGAGGCACATCAGATGGACTTTGGAGCCGCCGCGAAAGCTGTCGTTCTAG
CTTCAGGATCATCCCGGTTCAACGTTTCCAGCGCCCCATTCGTTATTTTG
CTGCACTTTTTCGAGACCTATGCGTATTCCCTGATGACTTTTCAGGTGGA
ACATTTCCGGAGATTCGGTACTGCGCGGAAAAAAACAGCGATCGGGATGA
GAAGAACTGGCTTTAACACTCGGAGGCTTACGAGTGGGATCATTTACCCC
CTTGCCGTCCTTTTCCCGAAAGGGGTTAAACAGGGTTTCACGCGAACGAT
ACGCTATACATCATTAGTCAGACCTGGAAAACCTACAGTACCTGAAAACC
CCAACTTGTCGCACAGTAATCGCGACTGTCGTAATATCAAACTTTTGATG
TCGCAGATTCAACGCGCGTGGCGGGGATACCTCGCTCGGACGGCGTTCTG
GACAGAAGGTGGCGTCGGGCTCCACGCGGTTGCCACCAGGATTCAACGGA
TCTTTCGGGGCTGGCGTGGGAAGGTCCGTGCCGTGCAAGCCTTATTGGAG
AAGAGAGCACGAGCAGCTACGGTGATTACGGCTTTGGGTCGAGGGTTCCA
AGGTCGGCAGAAGGCCAGGCGACTACGCGTGAACTGGCACAACGCGGCAG
CGGCGAAGATCCAGGGCCACTTCCGAGCACGTGCAGCAAGGAGGTGGATG
GAGCAGCTTCATCTCGTAGCGGCCATTCGGGGGGCGACGCGAGTCCAAGC
TGTCTGGAGAGGTTCTTCCGCCAGGAGACGATTCCGCGTGCTCCACTTAG
ACCAAAGCATGGAAGAGAAGTTTCTCAAAGGTGTGGGGTGGCAGGTTAAA
CTCCATTGGTCTAGCTAG

protein sequence of EsuBft101_5a-0001

>EsuBft101_5 ID=EsuBft101_5|Name=EsuBft101_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=605bp
MVGEVSLDQKVTDGCRRRVGNHRQTPIAAFAKRVHRCAPLGLMVVEPDYV
EGFLPAPLRPKRPRRSLAAKLKVQPIPFDGSPNSLQPATEPGAGRASCQS
IVESMQQRQGACDDRGERLGDESSGCGINGSPHGTAICSPSLDILTYEYR
GPTSSIPENQPLQSTPSAMDVRTLASPSLEPIGGTKVAKGHGDLEMTSAT
LGSSSRGKQVTDGGTAMASFEGEGGKAPTRSNEGAIFQRNTTHMRETTGG
AAIGSGRGSEAEEENEGENDPHIADGSDAGGRFATWPASEMIKGAKTTST
MTKQDFRDVVIPMALPGEAHQMDFGAAAKAVVLASGSSRFNVSSAPFVIL
LHFFETYAYSLMTFQVEHFRRFGTARKKTAIGMRRTGFNTRRLTSGIIYP
LAVLFPKGVKQGFTRTIRYTSLVRPGKPTVPENPNLSHSNRDCRNIKLLM
SQIQRAWRGYLARTAFWTEGGVGLHAVATRIQRIFRGWRGKVRAVQALLE
KRARAATVITALGRGFQGRQKARRLRVNWHNAAAAKIQGHFRARAARRWM
EQLHLVAAIRGATRVQAVWRGSSARRRFRVLHLDQSMEEKFLKGVGWQVK
LHWSS

mRNA from alignment at Scaffold_627:490172..493559+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft101_5a-0001 ID=EsuBft101_5a-0001|Name=EsuBft101_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3388bp|location=Sequence derived from alignment at Scaffold_627:490172..493559+ (Ectocarpus subulatus male Bft15b)
ATGGTGGGAGAGGTGAGCCTAGATCAGAAAGTCACCGATGGCTGCAGACG
ACGGGTGGGTAACCATCGACAGACTCCAATCGCTGCTTTCGCCAAGCGGG
TCCACCGATGTGCTCCGTTAGGGCTTATGGTCGTCGAGCCAGACTACGTG
GAAGGTTTTTTACCTGCACCCTTGAGACCAAAAAGGTGAACGTTCGAGTA
CCTGGAAATCATGCCCACATTAATACAGTTTTTTTATTATCTGGTTGTGA
GAAGGTAAGTGTCCGTACATCTGGCTGGTATGAAGTGGCGTTGGGCCGTC
AAAGCCAAACTAACGGGGGGAGGGGAGAACAGCTCACAACCTACTTGCAC
GAACTACCTCGACCGCTCCCCCACATGACAGGCCACGGCGATCACTTGCT
GCCAAGCTCAAGGTCCAACCGATCCCGTTCGACGGGAGCCCCAATTCCCT
ACAGCCTGCAACCGAACCTGGAGCCGGACGCGCCTCCTGTCAAAGTATTG
TGGAATCAATGCAACAGCGGCAAGGCGCTTGCGATGATCGTGGTGAGAGG
CTTGGCGACGAGTCAAGCGGGTGCGGCATCAATGGTTCCCCTCACGGCAC
TGCCATTTGTAGCCCATCCCTCGACATACTGACGTACGAGTACCGAGGAC
CAACGTCGTCAATACCGGAAAATCAGCCGTTACAGTCAACACCGTCAGCC
ATGGACGTCAGAACTCTTGCTTCCCCTTCGTTGGAGCCGATAGGTGGGAC
GAAAGTGGCGAAAGGGCATGGTGACTTGGAAATGACATCGGCGACCCTTG
GTAGCTCAAGCCGAGGTAAGCAAGTGACCGATGGGGGGACTGCGATGGCG
TCGTTCGAAGGTGAAGGCGGGAAGGCCCCAACAAGAAGCAACGAGGGAGC
GATATTTCAAAGGAACACAACACACATGCGCGAAACTACGGGAGGTGCTG
CTATTGGGTCTGGCAGAGGGTCAGAGGCGGAGGAGGAAAACGAAGGAGAA
AACGACCCGCATATAGCGGACGGTAGCGATGCTGGGGGACGCTTTGCTAC
ATGGCCAGCGTCAGAAATGATCAAAGGGGCTAAAACGACATCGACGATGA
CAAAGCAGGACTTCAGGGACGTGGTCATACCGATGGCCCTTCCCGGGGAG
GCACATCAGATGGACTTTGGAGCCGCCGCGAAAGCTGTCGTTCTAGCTTC
AGGATCATCCCGGTTCAACGTTTCCAGGTACAACTTGGCTCGGCTAATCT
ACAATTCTTGGCAGCATCTTTCACCACGACGCCGATACTCGTATACTAAA
CACCGGAATGCTGTCGGGGAAAGGTTGGATTAGACTGCTCTTCGCTCGTC
AGGTACACCAGATGTTGTAGATGAAGGCTGTTGGCAAAATGAACGCGGTC
GGCACAACGGTAACTAGGGAACGTGCAGCAACACAGTCATGCTGGACCGA
CCTGCGGGGATATACTCACTTGGTCAGCATTACCGGGCGCAATGTTTTCT
CAAGAAAATCCTGACGCTCGTTTTATTCCGTGCCTAGCCAGCGGTTCAAA
CAACTCAACCCCCCTTGCGGCTCCGTCCCTGGCATACTCTGACCCCCACG
TGGCGCGCTTGGTGGAGGTGGACACACACGAACTACAAAAGAGAGCCCAA
CGGACCAAGTACAATAACCCCTCTCGTTGTCATGTCCCTGTTCTCAACTT
GAACGTAGACGACAGTGTGTCGCGCATTGTGTAGCGCCCCATTCGTTATT
TTGCTGCACTTTTTCGAGACCTATGCGTATTCCCTGATGACTTTTCAGGT
ATGCTCGAGGGAAGGTTTTACCATCGAGAGTTGAGCTCCCTTGGAGGCTC
CCGCTGAAACCGCCTTGGCGCACGAAGGATGGCGTCACGTTAGAGGAACA
GCGGCCGGATCGATCGGGGGAGAGGCAAGCATGGCAACGATATCGCCATC
AGCAACAGCAGCACTGGGACCTACACCACGCGGCCCTTGAGGTGAAACTA
TCATCAGGTGGAACATTTCCGGAGATTCGGTACTGCGCGGAAAAAAACAG
CGATCGGGATGAGAAGAACTGGCTTTAACACTCGGAGGCTTACGAGTGGG
ATCATTTACCCCCTTGCCGTCCTTTTCCCGAAAGGGGTTAAACAGGGTTT
CACGCGAACGATACGCTATACATCATTAGTCAGACCTGGAAAACCTACAG
TACCTGAAAACCCCAACTTGTCGCACAGTAATCGCGACTGTCGTAATATC
AAACTTTTGATGTCGCAGATTCAACGCGCGTGGCGGGGATACCTCGCTCG
GACGGCGTTCTGGACAGAAGGTGGCGTCGGGCTCCACGCGGTTGCCACCA
GGATTCAACGGATCTTTCGGGGCTGGCGTGGGAAGGTGCTGCTGGGACTT
TCGCCATGCGTTTTTTCCAAGCGGTCTTTGAAACCGAGACCTCAGAGTGC
TCCCCATCGTCACGGCTTCCCCTAGTTCGCCTGCTTTGCTTTCTGGAAAC
CCCTCCAACATTTGTGTCCGTGAGCTGAAGGTCTTCATTGGCATGAACCC
GTGGTGCGAACCGCACGAGAGTGGACTAGTTCTAGGTGAAAAGGGCGGGG
TTGTTTTTGGTACAACCTCCCCAATAGCACCGGGCGGCGCCAACGCGCCA
GCCACTTACCATCGCCGTATGGGCATTAACAGGTCCGTGCCGTGCAAGCC
TTATTGGAGAAGAGAGCACGAGCAGCTACGGTGATTACGGCTTTGGGTCG
AGGGTTCCAAGGTCGGCAGAAGGCCAGGCGACTACGCGTGAACTGGCACA
ACGCGGCAGCGGCGAAGATCCAGGGCCACTTCCGAGCACGTGCAGCAAGG
AGGTACTGCAGTAAACTCTGTGCATTCAAGGAATCGGTTGGGGCGATGAA
CTCATATTAATCAATGACATGTGGCACATGTCTCCAACTTTCACTGGTTC
AAAATGAACGAAAATTTGGAGTAGCACTGGCACTCCTGAGCGTGGCATCT
AGGTCGTCTCCTGCGAACATAAGTTACGGGGCAAGTGTGGCAGCGGCCCT
TCAATGAGTGGGGGTACGCGTGCCTGAGCACTGCGTCTCTGATTACCATG
GGTCTCTGCCCACAAAGTAGAATGCGTTCCGTACTCGTCGACATCTGCCA
AGCGGATGGTCCAGGTTCCGGGCAACGTGAAAGCTATGACGAATCACAAC
TAAAAAACGACAGGTGGATGGAGCAGCTTCATCTCGTAGCGGCCATTCGG
GGGGCGACGCGAGTCCAAGCTGTCTGGAGAGGTTCTTCCGCCAGGAGACG
ATTCCGCGTGCTCCACTTAGACCAAAGCATGGAAGAGAAGTTTCTCAAAG
GTGTGGGGTGGCAGGTTAAACTCCATTGGTCTAGCTAG

Coding sequence (CDS) from alignment at Scaffold_627:490172..493559+

>EsuBft101_5a-0001 ID=EsuBft101_5a-0001|Name=EsuBft101_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1818bp|location=Sequence derived from alignment at Scaffold_627:490172..493559+ (Ectocarpus subulatus male Bft15b)
ATGGTGGGAGAGGTGAGCCTAGATCAGAAAGTCACCGATGGCTGCAGACG
ACGGGTGGGTAACCATCGACAGACTCCAATCGCTGCTTTCGCCAAGCGGG
TCCACCGATGTGCTCCGTTAGGGCTTATGGTCGTCGAGCCAGACTACGTG
GAAGGTTTTTTACCTGCACCCTTGAGACCAAAAAGGCCACGGCGATCACT
TGCTGCCAAGCTCAAGGTCCAACCGATCCCGTTCGACGGGAGCCCCAATT
CCCTACAGCCTGCAACCGAACCTGGAGCCGGACGCGCCTCCTGTCAAAGT
ATTGTGGAATCAATGCAACAGCGGCAAGGCGCTTGCGATGATCGTGGTGA
GAGGCTTGGCGACGAGTCAAGCGGGTGCGGCATCAATGGTTCCCCTCACG
GCACTGCCATTTGTAGCCCATCCCTCGACATACTGACGTACGAGTACCGA
GGACCAACGTCGTCAATACCGGAAAATCAGCCGTTACAGTCAACACCGTC
AGCCATGGACGTCAGAACTCTTGCTTCCCCTTCGTTGGAGCCGATAGGTG
GGACGAAAGTGGCGAAAGGGCATGGTGACTTGGAAATGACATCGGCGACC
CTTGGTAGCTCAAGCCGAGGTAAGCAAGTGACCGATGGGGGGACTGCGAT
GGCGTCGTTCGAAGGTGAAGGCGGGAAGGCCCCAACAAGAAGCAACGAGG
GAGCGATATTTCAAAGGAACACAACACACATGCGCGAAACTACGGGAGGT
GCTGCTATTGGGTCTGGCAGAGGGTCAGAGGCGGAGGAGGAAAACGAAGG
AGAAAACGACCCGCATATAGCGGACGGTAGCGATGCTGGGGGACGCTTTG
CTACATGGCCAGCGTCAGAAATGATCAAAGGGGCTAAAACGACATCGACG
ATGACAAAGCAGGACTTCAGGGACGTGGTCATACCGATGGCCCTTCCCGG
GGAGGCACATCAGATGGACTTTGGAGCCGCCGCGAAAGCTGTCGTTCTAG
CTTCAGGATCATCCCGGTTCAACGTTTCCAGCGCCCCATTCGTTATTTTG
CTGCACTTTTTCGAGACCTATGCGTATTCCCTGATGACTTTTCAGGTGGA
ACATTTCCGGAGATTCGGTACTGCGCGGAAAAAAACAGCGATCGGGATGA
GAAGAACTGGCTTTAACACTCGGAGGCTTACGAGTGGGATCATTTACCCC
CTTGCCGTCCTTTTCCCGAAAGGGGTTAAACAGGGTTTCACGCGAACGAT
ACGCTATACATCATTAGTCAGACCTGGAAAACCTACAGTACCTGAAAACC
CCAACTTGTCGCACAGTAATCGCGACTGTCGTAATATCAAACTTTTGATG
TCGCAGATTCAACGCGCGTGGCGGGGATACCTCGCTCGGACGGCGTTCTG
GACAGAAGGTGGCGTCGGGCTCCACGCGGTTGCCACCAGGATTCAACGGA
TCTTTCGGGGCTGGCGTGGGAAGGTCCGTGCCGTGCAAGCCTTATTGGAG
AAGAGAGCACGAGCAGCTACGGTGATTACGGCTTTGGGTCGAGGGTTCCA
AGGTCGGCAGAAGGCCAGGCGACTACGCGTGAACTGGCACAACGCGGCAG
CGGCGAAGATCCAGGGCCACTTCCGAGCACGTGCAGCAAGGAGGTGGATG
GAGCAGCTTCATCTCGTAGCGGCCATTCGGGGGGCGACGCGAGTCCAAGC
TGTCTGGAGAGGTTCTTCCGCCAGGAGACGATTCCGCGTGCTCCACTTAG
ACCAAAGCATGGAAGAGAAGTTTCTCAAAGGTGTGGGGTGGCAGGTTAAA
CTCCATTGGTCTAGCTAG