EsuBft101_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft101_2a-0001
Unique Name	EsuBft101_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_627	contig	Scaffold_627:452143..452982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	159749.K0S0Q9
ProteomeId	EsuBft101_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	84
Hectar predicted targeting category	other localisation
Evalue	2.51e-06
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Plant transposon protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft101_2a	EsuBft101_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_627 452143..452982 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft101_2a-0001-exon	EsuBft101_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 452143..452982 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft101_2a-0001-cds	EsuBft101_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_627 452143..452346 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft101_2a-0001-exon	agat-three_prime_utr-209	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_627 452347..452982 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft101_2a-0001	EsuBft101_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_627 452143..452346 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_627:452143..452982+
coding sequence from alignment at Scaffold_627:452143..452982+

spliced messenger RNA

>EsuBft101_2a-0001 ID=EsuBft101_2a-0001|Name=EsuBft101_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=840bp|location=Sequence derived from alignment at Scaffold_627:452143..452982+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTGTACGCGGGGCTTTCCCGGCGCCGACAACGACAAGACCATCGT
GAGGTTCGACAAGTTCGCCAACTCGGTTCGAGACGGGTGGTACAAGGACG
TGGAGTACACTCTGAAGGGCAAAGACGGGGAGGACGTGCGCGAGAAAGGG
CCATTGTTGATCTTGGACGGTGGATACTACTACGTGAGTGCATCGTATTC
GTAGTTCAGGCAGTTGATGGTATAGAGTGGCGCCGGAGTTGATGTCCCGT
CGTGTTCGTGAGGATACGAGCCGCCGTTGGGCAGAGCAGCTGGCGTGTTC
TAAAGATGGTTGAACACACGCGTGCTGTTTGATGTTGGTACTGCAGTATT
GCGGACGGACCAATCGGTGGTCACCTGTTCGACCCAGCTGCTCCGCTCTT
CCGAAAATGCCTTCTTGTTTTGGGCCGTCTGGTTCTTTTTTTTTTGGGGG
GGGGGGGGGAATGGATGTGTTTCTTTGTATTGCAGACGACGTTCATGTAC
GATCAGTGTTCAGTGTGTTGACGTACTCCGATCGCCCCCCACCAACCATG
GTAAGGTGGGTTCGTCGTGGCCGCAAGAGAGCGCCCATGTTTCATTCACC
CTCTTGCTTCCACCGTCATGGGAGATGTTCCCGCGGTGCCATCACCTCCA
AATATGTTGCGCGAGCCACGTGCCTTGCTACAGGCATGTTGACGAGTGTT
ACAGGCATGTTGGCGAGTGGTCCTGTTAGCGTTCCTCGTCGTCTCACGGG
ATGTAAAATTGACTCCTTGGCTTGCCGTCGTCGCGTGTCTCCTTTGACAT
CAGTGCTACACCCACCACAACATAACTCACGCCCACACCC

protein sequence of EsuBft101_2a-0001

>EsuBft101_2 ID=EsuBft101_2|Name=EsuBft101_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MSCTRGFPGADNDKTIVRFDKFANSVRDGWYKDVEYTLKGKDGEDVREKG
PLLILDGGYYYVSASYS

mRNA from alignment at Scaffold_627:452143..452982+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft101_2a-0001 ID=EsuBft101_2a-0001|Name=EsuBft101_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=840bp|location=Sequence derived from alignment at Scaffold_627:452143..452982+ (Ectocarpus subulatus male Bft15b)
ATGTCGTGTACGCGGGGCTTTCCCGGCGCCGACAACGACAAGACCATCGT
GAGGTTCGACAAGTTCGCCAACTCGGTTCGAGACGGGTGGTACAAGGACG
TGGAGTACACTCTGAAGGGCAAAGACGGGGAGGACGTGCGCGAGAAAGGG
CCATTGTTGATCTTGGACGGTGGATACTACTACGTGAGTGCATCGTATTC
GTAGTTCAGGCAGTTGATGGTATAGAGTGGCGCCGGAGTTGATGTCCCGT
CGTGTTCGTGAGGATACGAGCCGCCGTTGGGCAGAGCAGCTGGCGTGTTC
TAAAGATGGTTGAACACACGCGTGCTGTTTGATGTTGGTACTGCAGTATT
GCGGACGGACCAATCGGTGGTCACCTGTTCGACCCAGCTGCTCCGCTCTT
CCGAAAATGCCTTCTTGTTTTGGGCCGTCTGGTTCTTTTTTTTTTGGGGG
GGGGGGGGGAATGGATGTGTTTCTTTGTATTGCAGACGACGTTCATGTAC
GATCAGTGTTCAGTGTGTTGACGTACTCCGATCGCCCCCCACCAACCATG
GTAAGGTGGGTTCGTCGTGGCCGCAAGAGAGCGCCCATGTTTCATTCACC
CTCTTGCTTCCACCGTCATGGGAGATGTTCCCGCGGTGCCATCACCTCCA
AATATGTTGCGCGAGCCACGTGCCTTGCTACAGGCATGTTGACGAGTGTT
ACAGGCATGTTGGCGAGTGGTCCTGTTAGCGTTCCTCGTCGTCTCACGGG
ATGTAAAATTGACTCCTTGGCTTGCCGTCGTCGCGTGTCTCCTTTGACAT
CAGTGCTACACCCACCACAACATAACTCACGCCCACACCC

Coding sequence (CDS) from alignment at Scaffold_627:452143..452982+

>EsuBft101_2a-0001 ID=EsuBft101_2a-0001|Name=EsuBft101_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_627:452143..452982+ (Ectocarpus subulatus male Bft15b)
ATGTCGTGTACGCGGGGCTTTCCCGGCGCCGACAACGACAAGACCATCGT
GAGGTTCGACAAGTTCGCCAACTCGGTTCGAGACGGGTGGTACAAGGACG
TGGAGTACACTCTGAAGGGCAAAGACGGGGAGGACGTGCGCGAGAAAGGG
CCATTGTTGATCTTGGACGGTGGATACTACTACGTGAGTGCATCGTATTC
GTAG