|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D7FNE2 |
ProteomeId | EsuBft1019_4 |
Protein domains | IPR011989 |
Protein domains | IPR016024 |
Protein domains | PTHR10527 |
Owner | apollo_admin@sb-roscoff.fr |
Note | importin-5 os:homo sapiens gn:ipo5 pe:1 sv:4 [Automatic annotation] |
Nb exon | 1 |
Max annot lvl | 2759|Eukaryota |
Length | 3145 |
Hectar predicted targeting category | other localisation |
Evalue | 1.31e-310 |
EggNOG OGs | KOG2171@1|root,KOG2171@2759|Eukaryota |
Ec32 ortholog description | Armadillo-type fold |
Ec32 ortholog | Ec-01_001780.1 |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
KEGG ko | ko:K20195,ko:K20221,ko:K20222 |
KEGG TC | 1.I.1 |
KEGG Pathway | ko04138,map04138 |
Description | ribosomal protein import into nucleus |
COG category | S |
BRITE | ko00000,ko00001,ko03009,ko04131 |
Cross References
External references for this mRNA
Database | Accession |
GO | 0005515 |
GO | 0015031 |
GO | 0005488 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3145bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG TAGCGGTGCTCGGCTGAGAACAAGTCGGTGCGTCGCTAGGTGGACTCGCT CCTTGGTTTGTGGTTTGAAGGCTGGTGGTATGTTTTGTGAAGCCCGGCAG TTGTGTGTACTGACCCGTTTTGATGAAAGAGCCACAGCAGTTTGTAGTTT TTTTTTTCACGTTTTTTTTTTTGTCCCTTTTGCTTTGCTCTCTGCTGACG CGTGTACGACTGGTTTTGTTCGGTGGGTATGTTGGATTTTCATCTCAGAG TTCCTTCCTTTGCCTTCTCGCGCCTACCGCAGAGCAGCGTGGTCCTTCTC TTGGGGTGTGATAGACATGCATGCGCCTGTACTTGTAGTTCAGAAAGTAC CGTGAGTGACACAAGAAAGCACACCCTGGTGATAGGATTGTTCAAATTAT GAAGCTTATCACCTAGTGTGCTTTCCTGGAATGGGTGTGTTATCTTGTGT CACCGGTGTGATAATGTACACGTTGACGGAGCCCGCAATCAGGGGATGAT AAGCCAAGGGGATGTGATACGCCAAAGCGGGTGTGATAAAATTTTTGCCT GCTCCACCATTCCTTGAAGAGGTGTGATAAATGAAGGGGTGTGTAATAAC ACTCAGCAAACTCTGTTGCGGGGTCACCAACCGACAATGTTGTGCTGGCC TCGGCGGACGCTGTTGAGCGGGCTTTGGCAGCACTTGCGGTGGCTGGTGC ATTTGGCGTCTCATCATTTGACTTGGTCGCGGGTTGCTTCGAGAAAAATG ATGTGATCGCTCATGGAGGCGCCGGCGTAGACATTGACACCACCGTCTGA GCGACGTCACTTCCAGCGGGGTTGTTTCAGGAGGGTTGTCTACCTCCTTC ACCTCCGTATTGTCCTCGTTTGTGTGCATACCAGCTGTGTGCTTCTGTTC GTGTGTGCATGTCGGGCTGTGCACATCCGTGCCACCAGCCACTAGCCACG AGGTGTGAAAATGGAGGCTCCGTGATTGGAAATGCGGCGAGACTGTAGGG GGTGTGCTATCTTTGATGTCACCGGTGTAAGAAATTGGCGTTTTTTTCAG AGTAAAATTATATATATCACCGGGTGTGCTTTCCTGGAGAGGTGTGTTGG GGGTGTGCTTTCTTGTGTCACTTACGGTAAGGTTCGATGTTAGTCCCGTG TGGATGGTGCTTCCATAGAATAGCAAACGACGAAATTCTTACCATCGTTC CGCGTTACGGTGCTCATGCGCCAGTTGGGGACGAAGATCACGCACGGAAT CCCTCGCTTCTTGAAGAACTGTCGGGACAAAAGCACGGGAGGGCCGAAAG GCGGGCAGAGGTTCAAATCGACCGAAGAGTTTTTTTGTAATTATT back to topprotein sequence of EsuBft1019_4a-0001 >EsuBft1019_4 ID=EsuBft1019_4|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=600bp
MAGVLVEEFLPYLSEAVKPLLVALSINAEIKHSNAPDATLAKDELEAEGL TAMAVDLRGVGRQVFGVNTSLMQAKESACKTLYQYTEDLGEGFAPHAAET LAVVIPNLGPRNAIGVQVISSAIVPKLVALAERRAAEAVAAGAGAKEVQE AQAMLDAAVDALTERLSGGSGNDCAQQQQQQQQQQREEPLERRDQERQCV AADALSDLLEGRCGGGTQGQKPSVIRLSDERLLKTVTGLRNVAAASIGRT RAALAAAAAGAGGGLGGQGGMTGAVDAAELRELEDGEEELLVSVVDATGW MIKGRKETFLPAFEAVMRPLVVQLLDPAAVAAVPPSHRSFGLCMAIDVLE HCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQ DFDAHSAEALGLLLALARKDPGDDNDDDDGWGEGAVRDNAVSAAFRVLIH RPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFG GGGDGALHAAAVVPKLVTAMAGMMEYQSRGNGGDGYGSQEELWERQLVDR ETREKAEEVVALVKAVFPGEFQRAWEGLGEAGQRALQMPTSSVCSRADES back to topmRNA from alignment at Scaffold_392:51495..54639+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3145bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b) ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT
CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA
ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT
ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT
GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC
AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG
CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA
GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC
GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG
GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG
CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC
GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC
ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA
AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG
AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG
ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG
AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG
ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT
GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC
CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG
CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC
GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA
GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG
GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC
CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG
GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC
CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT
CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC
ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC
GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT
TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG
ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG
GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT
TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC
GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG
TAGCGGTGCTCGGCTGAGAACAAGTCGGTGCGTCGCTAGGTGGACTCGCT
CCTTGGTTTGTGGTTTGAAGGCTGGTGGTATGTTTTGTGAAGCCCGGCAG
TTGTGTGTACTGACCCGTTTTGATGAAAGAGCCACAGCAGTTTGTAGTTT
TTTTTTTCACGTTTTTTTTTTTGTCCCTTTTGCTTTGCTCTCTGCTGACG
CGTGTACGACTGGTTTTGTTCGGTGGGTATGTTGGATTTTCATCTCAGAG
TTCCTTCCTTTGCCTTCTCGCGCCTACCGCAGAGCAGCGTGGTCCTTCTC
TTGGGGTGTGATAGACATGCATGCGCCTGTACTTGTAGTTCAGAAAGTAC
CGTGAGTGACACAAGAAAGCACACCCTGGTGATAGGATTGTTCAAATTAT
GAAGCTTATCACCTAGTGTGCTTTCCTGGAATGGGTGTGTTATCTTGTGT
CACCGGTGTGATAATGTACACGTTGACGGAGCCCGCAATCAGGGGATGAT
AAGCCAAGGGGATGTGATACGCCAAAGCGGGTGTGATAAAATTTTTGCCT
GCTCCACCATTCCTTGAAGAGGTGTGATAAATGAAGGGGTGTGTAATAAC
ACTCAGCAAACTCTGTTGCGGGGTCACCAACCGACAATGTTGTGCTGGCC
TCGGCGGACGCTGTTGAGCGGGCTTTGGCAGCACTTGCGGTGGCTGGTGC
ATTTGGCGTCTCATCATTTGACTTGGTCGCGGGTTGCTTCGAGAAAAATG
ATGTGATCGCTCATGGAGGCGCCGGCGTAGACATTGACACCACCGTCTGA
GCGACGTCACTTCCAGCGGGGTTGTTTCAGGAGGGTTGTCTACCTCCTTC
ACCTCCGTATTGTCCTCGTTTGTGTGCATACCAGCTGTGTGCTTCTGTTC
GTGTGTGCATGTCGGGCTGTGCACATCCGTGCCACCAGCCACTAGCCACG
AGGTGTGAAAATGGAGGCTCCGTGATTGGAAATGCGGCGAGACTGTAGGG
GGTGTGCTATCTTTGATGTCACCGGTGTAAGAAATTGGCGTTTTTTTCAG
AGTAAAATTATATATATCACCGGGTGTGCTTTCCTGGAGAGGTGTGTTGG
GGGTGTGCTTTCTTGTGTCACTTACGGTAAGGTTCGATGTTAGTCCCGTG
TGGATGGTGCTTCCATAGAATAGCAAACGACGAAATTCTTACCATCGTTC
CGCGTTACGGTGCTCATGCGCCAGTTGGGGACGAAGATCACGCACGGAAT
CCCTCGCTTCTTGAAGAACTGTCGGGACAAAAGCACGGGAGGGCCGAAAG
GCGGGCAGAGGTTCAAATCGACCGAAGAGTTTTTTTGTAATTATT back to topCoding sequence (CDS) from alignment at Scaffold_392:51495..54639+ >EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1803bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b) ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG TAG back to top
|