EsuBft1019_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1019_4a-0001
Unique NameEsuBft1019_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:51495..54639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNE2
ProteomeIdEsuBft1019_4
Protein domainsIPR011989
Protein domainsIPR016024
Protein domainsPTHR10527
Ownerapollo_admin@sb-roscoff.fr
Noteimportin-5 os:homo sapiens gn:ipo5 pe:1 sv:4 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length3145
Hectar predicted targeting categoryother localisation
Evalue1.31e-310
EggNOG OGsKOG2171@1|root,KOG2171@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-01_001780.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K20195,ko:K20221,ko:K20222
KEGG TC1.I.1
KEGG Pathwayko04138,map04138
Descriptionribosomal protein import into nucleus
COG categoryS
BRITEko00000,ko00001,ko03009,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
GO0015031
GO0005488
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_4aEsuBft1019_4aEctocarpus subulatus male Bft15bgeneScaffold_392 51495..54639 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_4a-0001-exonEsuBft1019_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 51495..54639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_4a-0001-cdsEsuBft1019_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 51495..53297 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_4a-0001-exonagat-three_prime_utr-199Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_392 53298..54639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_4a-0001EsuBft1019_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 51495..53297 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3145bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT
CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA
ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT
ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT
GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC
AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG
CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA
GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC
GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG
GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG
CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC
GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC
ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA
AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG
AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG
ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG
AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG
ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT
GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC
CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG
CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC
GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA
GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG
GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC
CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG
GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC
CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT
CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC
ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC
GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT
TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG
ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG
GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT
TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC
GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG
TAGCGGTGCTCGGCTGAGAACAAGTCGGTGCGTCGCTAGGTGGACTCGCT
CCTTGGTTTGTGGTTTGAAGGCTGGTGGTATGTTTTGTGAAGCCCGGCAG
TTGTGTGTACTGACCCGTTTTGATGAAAGAGCCACAGCAGTTTGTAGTTT
TTTTTTTCACGTTTTTTTTTTTGTCCCTTTTGCTTTGCTCTCTGCTGACG
CGTGTACGACTGGTTTTGTTCGGTGGGTATGTTGGATTTTCATCTCAGAG
TTCCTTCCTTTGCCTTCTCGCGCCTACCGCAGAGCAGCGTGGTCCTTCTC
TTGGGGTGTGATAGACATGCATGCGCCTGTACTTGTAGTTCAGAAAGTAC
CGTGAGTGACACAAGAAAGCACACCCTGGTGATAGGATTGTTCAAATTAT
GAAGCTTATCACCTAGTGTGCTTTCCTGGAATGGGTGTGTTATCTTGTGT
CACCGGTGTGATAATGTACACGTTGACGGAGCCCGCAATCAGGGGATGAT
AAGCCAAGGGGATGTGATACGCCAAAGCGGGTGTGATAAAATTTTTGCCT
GCTCCACCATTCCTTGAAGAGGTGTGATAAATGAAGGGGTGTGTAATAAC
ACTCAGCAAACTCTGTTGCGGGGTCACCAACCGACAATGTTGTGCTGGCC
TCGGCGGACGCTGTTGAGCGGGCTTTGGCAGCACTTGCGGTGGCTGGTGC
ATTTGGCGTCTCATCATTTGACTTGGTCGCGGGTTGCTTCGAGAAAAATG
ATGTGATCGCTCATGGAGGCGCCGGCGTAGACATTGACACCACCGTCTGA
GCGACGTCACTTCCAGCGGGGTTGTTTCAGGAGGGTTGTCTACCTCCTTC
ACCTCCGTATTGTCCTCGTTTGTGTGCATACCAGCTGTGTGCTTCTGTTC
GTGTGTGCATGTCGGGCTGTGCACATCCGTGCCACCAGCCACTAGCCACG
AGGTGTGAAAATGGAGGCTCCGTGATTGGAAATGCGGCGAGACTGTAGGG
GGTGTGCTATCTTTGATGTCACCGGTGTAAGAAATTGGCGTTTTTTTCAG
AGTAAAATTATATATATCACCGGGTGTGCTTTCCTGGAGAGGTGTGTTGG
GGGTGTGCTTTCTTGTGTCACTTACGGTAAGGTTCGATGTTAGTCCCGTG
TGGATGGTGCTTCCATAGAATAGCAAACGACGAAATTCTTACCATCGTTC
CGCGTTACGGTGCTCATGCGCCAGTTGGGGACGAAGATCACGCACGGAAT
CCCTCGCTTCTTGAAGAACTGTCGGGACAAAAGCACGGGAGGGCCGAAAG
GCGGGCAGAGGTTCAAATCGACCGAAGAGTTTTTTTGTAATTATT
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protein sequence of EsuBft1019_4a-0001

>EsuBft1019_4 ID=EsuBft1019_4|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=600bp
MAGVLVEEFLPYLSEAVKPLLVALSINAEIKHSNAPDATLAKDELEAEGL
TAMAVDLRGVGRQVFGVNTSLMQAKESACKTLYQYTEDLGEGFAPHAAET
LAVVIPNLGPRNAIGVQVISSAIVPKLVALAERRAAEAVAAGAGAKEVQE
AQAMLDAAVDALTERLSGGSGNDCAQQQQQQQQQQREEPLERRDQERQCV
AADALSDLLEGRCGGGTQGQKPSVIRLSDERLLKTVTGLRNVAAASIGRT
RAALAAAAAGAGGGLGGQGGMTGAVDAAELRELEDGEEELLVSVVDATGW
MIKGRKETFLPAFEAVMRPLVVQLLDPAAVAAVPPSHRSFGLCMAIDVLE
HCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQ
DFDAHSAEALGLLLALARKDPGDDNDDDDGWGEGAVRDNAVSAAFRVLIH
RPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFG
GGGDGALHAAAVVPKLVTAMAGMMEYQSRGNGGDGYGSQEELWERQLVDR
ETREKAEEVVALVKAVFPGEFQRAWEGLGEAGQRALQMPTSSVCSRADES
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mRNA from alignment at Scaffold_392:51495..54639+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3145bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b)
ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG TAGCGGTGCTCGGCTGAGAACAAGTCGGTGCGTCGCTAGGTGGACTCGCT CCTTGGTTTGTGGTTTGAAGGCTGGTGGTATGTTTTGTGAAGCCCGGCAG TTGTGTGTACTGACCCGTTTTGATGAAAGAGCCACAGCAGTTTGTAGTTT TTTTTTTCACGTTTTTTTTTTTGTCCCTTTTGCTTTGCTCTCTGCTGACG CGTGTACGACTGGTTTTGTTCGGTGGGTATGTTGGATTTTCATCTCAGAG TTCCTTCCTTTGCCTTCTCGCGCCTACCGCAGAGCAGCGTGGTCCTTCTC TTGGGGTGTGATAGACATGCATGCGCCTGTACTTGTAGTTCAGAAAGTAC CGTGAGTGACACAAGAAAGCACACCCTGGTGATAGGATTGTTCAAATTAT GAAGCTTATCACCTAGTGTGCTTTCCTGGAATGGGTGTGTTATCTTGTGT CACCGGTGTGATAATGTACACGTTGACGGAGCCCGCAATCAGGGGATGAT AAGCCAAGGGGATGTGATACGCCAAAGCGGGTGTGATAAAATTTTTGCCT GCTCCACCATTCCTTGAAGAGGTGTGATAAATGAAGGGGTGTGTAATAAC ACTCAGCAAACTCTGTTGCGGGGTCACCAACCGACAATGTTGTGCTGGCC TCGGCGGACGCTGTTGAGCGGGCTTTGGCAGCACTTGCGGTGGCTGGTGC ATTTGGCGTCTCATCATTTGACTTGGTCGCGGGTTGCTTCGAGAAAAATG ATGTGATCGCTCATGGAGGCGCCGGCGTAGACATTGACACCACCGTCTGA GCGACGTCACTTCCAGCGGGGTTGTTTCAGGAGGGTTGTCTACCTCCTTC ACCTCCGTATTGTCCTCGTTTGTGTGCATACCAGCTGTGTGCTTCTGTTC GTGTGTGCATGTCGGGCTGTGCACATCCGTGCCACCAGCCACTAGCCACG AGGTGTGAAAATGGAGGCTCCGTGATTGGAAATGCGGCGAGACTGTAGGG GGTGTGCTATCTTTGATGTCACCGGTGTAAGAAATTGGCGTTTTTTTCAG AGTAAAATTATATATATCACCGGGTGTGCTTTCCTGGAGAGGTGTGTTGG GGGTGTGCTTTCTTGTGTCACTTACGGTAAGGTTCGATGTTAGTCCCGTG TGGATGGTGCTTCCATAGAATAGCAAACGACGAAATTCTTACCATCGTTC CGCGTTACGGTGCTCATGCGCCAGTTGGGGACGAAGATCACGCACGGAAT CCCTCGCTTCTTGAAGAACTGTCGGGACAAAAGCACGGGAGGGCCGAAAG GCGGGCAGAGGTTCAAATCGACCGAAGAGTTTTTTTGTAATTATT
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Coding sequence (CDS) from alignment at Scaffold_392:51495..54639+

>EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1803bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b)
ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT
CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA
ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT
ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT
GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC
AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG
CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA
GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC
GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG
GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG
CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC
GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC
ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA
AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG
AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG
ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG
AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG
ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT
GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC
CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG
CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC
GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA
GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG
GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC
CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG
GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC
CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT
CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC
ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC
GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT
TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG
ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG
GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT
TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC
GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG
TAG
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