EsuBft1019_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1019_2a-0001
Unique NameEsuBft1019_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:61467..63681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNE3
ProteomeIdEsuBft1019_2
Protein domainsPS51257
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length41
Hectar predicted targeting categorysignal peptide
Evalue2.69e-61
EggNOG OGsKOG3777@1|root,KOG3777@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionzinc finger CCCH-type containing
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_2aEsuBft1019_2aEctocarpus subulatus male Bft15bgeneScaffold_392 61467..63681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_2a-0001EsuBft1019_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 61467..63681 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_2a-0001-exonEsuBft1019_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 61467..61512 -
EsuBft1019_2a-0001-exonagat-exon-46350Ectocarpus subulatus male Bft15bexonScaffold_392 61759..61898 -
EsuBft1019_2a-0001-exonagat-exon-46349Ectocarpus subulatus male Bft15bexonScaffold_392 62268..62317 -
EsuBft1019_2a-0001-exonagat-exon-46348Ectocarpus subulatus male Bft15bexonScaffold_392 63010..63100 -
EsuBft1019_2a-0001-exonagat-exon-46347Ectocarpus subulatus male Bft15bexonScaffold_392 63595..63681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_2a-0001-cdsEsuBft1019_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 61467..61512 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1019_2a-0001 ID=EsuBft1019_2a-0001|Name=EsuBft1019_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=414bp|location=Sequence derived from alignment at Scaffold_392:61467..63681- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTCGTCGGTCTTGGTCTCGTCAGCATACTCACCGCGTGCTACCC
TGGGATGATTTCTCCCCACCAGGACGGTTTGCTCCAGATGTTTGCGTACT
CCCACGAAGGCGCGGACATCGGCGTGAGGGTGGCGGCCTTGAAGGCGGCC
TGTTCCTACCTCCAGCGCTTGATTCCGGGTGCTGTCGCGTCCGCTTCTCT
GTGGCCGAAGATGACGTCCGTCGTGGAGGCCGCGGCTGACTCCGGGGATC
CAGTCGCTGCCCAAGAAGCACGGGAGGTGGTCGACGGGATTACCATCGAG
CAGTCCGGGGCCGCAGGGGGGTACTCAGAGGGGACCAGCCTCGAAACGAG
CTGCCCACCCTGGAAGAAGTTGATGTGCTCCGGCCATCCGTTTCAGGCTC
TCAGACAGGTGTAA
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protein sequence of EsuBft1019_2a-0001

>EsuBft1019_2 ID=EsuBft1019_2|Name=EsuBft1019_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=137bp
MKVVGLGLVSILTACYPGMISPHQDGLLQMFAYSHEGADIGVRVAALKAA
CSYLQRLIPGAVASASLWPKMTSVVEAAADSGDPVAAQEAREVVDGITIE
QSGAAGGYSEGTSLETSCPPWKKLMCSGHPFQALRQV
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mRNA from alignment at Scaffold_392:61467..63681-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1019_2a-0001 ID=EsuBft1019_2a-0001|Name=EsuBft1019_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2215bp|location=Sequence derived from alignment at Scaffold_392:61467..63681- (Ectocarpus subulatus male Bft15b)
ATGAAGGTCGTCGGTCTTGGTCTCGTCAGCATACTCACCGCGTGCTACCC
TGGGATGATTTCTCCCCACCAGGACGGTTTGCTCCAGGTATCTCGAGGTT
GTGAAGGAGAAAAGGTCTTTGTGTGGATGTGTGTGTACTTTCTTCTAAGA
AAAAGGAGATGCACCAGAAGGGACGGTGTCGCGGTTGAAGCGAGTCGGGG
CCGGGGCACCGGGGATAGTTGTGTTTTTTGTTCTTCCCGTAGCAAGCGAG
GGGAGTGTTGCCGCGGGATGGCACTTCGCTAGCGCGATCTGCAGGTAGCA
GTATTGCCCCCCCTTTCGGCGACCGGTGGGACGTCTTTCGCTCGGAGGAA
AATCCAAATCACCCCAGAAGATCGTGCGAACACATTCCAAGGTTAGCTTG
GCTGAGCTGACATTTAAGGCTGCCACTCCCTCCCAACAATCTTCAACTTC
CTCTCCTCCCTGCGCTGTGATTGCCGTGATTGCTGCTATGGCGGCGCTCT
TCTTTCTGACATCGTACCGTGTGCTCTGCTCGGCGTTGACAACGCGTGTG
TGCTTCTTGGGGTGGCCTAATCGGCCTGCAGATGTTTGCGTACTCCCACG
AAGGCGCGGACATCGGCGTGAGGGTGGCGGCCTTGAAGGCGGCCTGTTCC
TACCTCCAGCGCTTGATTCCGGGTTTGTAACACTTATTGTTGCACCTCGG
CCACATGGTTAATGCCTCAAATGTCCCGTGTTGTTGTTGCTATGTTCGGT
TGTGGTGGAGGCGGGAAAGGTCGCGGTGGATTGCACCCCCTCCAACAACG
CCATGGTCGACGCGACGCGGTGCTTTTTCGGTCGCAGTTGTGCCTATCAC
TCTCGTCGTGTGTTGACGTCGTTAGTCTGGTTGATTCCCGATGCTACTTG
CTGTTGCTGGGTTGTTTGCCACAGCTGTGGTCGTGGGCCGTGTTGTCAGT
CACCCCGAGCCAAGCACGGGAACACACTGAAGTAGGTGTACACCATGGTA
AACATGGCATGTGGTGTCCTTTCTTTGTGACACCCTCCATCGGTCTGCTG
TGTCCTTGTCTCGCCTGCCTCTAAACTCACAAGTCCTCGAACTTCATGCA
GCTCAAGAATTGAAACACTGGATGCTCCCCCGTCCATTCGTAAAGCGCGA
CAAGTTTAATATGAACCTCCGAATTCTGATTGGGTCCATCTGGAAGAGCA
ACCAACCGTGCTTCGTCGTCGTCACATTCGTGGGCAACAGTCAAATGTCA
ACCGTCGAGCTATTCACGGCAACCAATGGGTGAACCCCTCGCCGCCTCTT
CCTCCCCCTCGTGCGTATGCCAACGGCTCATCATGTTTTGGCCTCCTGCT
CTCAGGGCCGTCAGGTGCTGTCGCGTCCGCTTCTCTGTGGCCGAAGATGA
CGTCCGTCGTGGAGGTAAGTGTTCGCCTTTTTTTTTCTCAAGTGAGACTC
ACTTATTCTACGTGTTAGTAGCTTGTACACCAGGATGATAATCCGGGCCG
ACATGGCGGTTGGTTTTCAGTGTTGAAAAGGAAGTGAGTTGTGAAATTTG
AATGCAGGAACGAAACGACAAGAAAAAACGAAATAGAACCTGACGTAGGC
ACCGAAACGAAACTAAACAGAACGGGCCGAAACGGAACGAAAACGGGAGC
GTAACAGAACAGAACACGACGAGGCGAAAACCGAACGTAACGAAACTCCC
GCGTGTACACAAATCTAACCTGCTTACGGGATTTGTTCTTCTTCGTCTTG
GGCATGTTGTTGTCTATAACGCACCTCACGCAGGCCGCGGCTGACTCCGG
GGATCCAGTCGCTGCCCAAGAAGCACGGGAGGTGGTCGACGGGATTACCA
TCGAGCAGTCCGGGGCCGCAGGGGGGTACTCAGAGGGGACCAGCCTCGAA
ACGAGCTGCCCACCCTGGAAGAAGTATGTGAGAGAGAGAGCACTTGTTTG
TGTGTGTTGATGGTTTGGTCTGTACCGGTGCTTGCGAGTGTGGTCGACCA
ATTCCAACCCAACCGTGCTTGCGAGGCTTATGTGGAGTCGATCAGCCTTC
AAGTGTTCTTCGGGCAAGGAGGAAGAGATCATGACGGAAGAAAGCCGGAC
TATTTGGTACGTCTTGCCTTCGGTAGCGTTCATTCATGTCGTTTTCACCC
AAGGTTCAGACACACGCAGGTTGATGTGCTCCGGCCATCCGTTTCAGGCT
CTCAGACAGGTGTAA
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Coding sequence (CDS) from alignment at Scaffold_392:61467..63681-

>EsuBft1019_2a-0001 ID=EsuBft1019_2a-0001|Name=EsuBft1019_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=414bp|location=Sequence derived from alignment at Scaffold_392:61467..63681- (Ectocarpus subulatus male Bft15b)
ATGAAGGTCGTCGGTCTTGGTCTCGTCAGCATACTCACCGCGTGCTACCC
TGGGATGATTTCTCCCCACCAGGACGGTTTGCTCCAGATGTTTGCGTACT
CCCACGAAGGCGCGGACATCGGCGTGAGGGTGGCGGCCTTGAAGGCGGCC
TGTTCCTACCTCCAGCGCTTGATTCCGGGTGCTGTCGCGTCCGCTTCTCT
GTGGCCGAAGATGACGTCCGTCGTGGAGGCCGCGGCTGACTCCGGGGATC
CAGTCGCTGCCCAAGAAGCACGGGAGGTGGTCGACGGGATTACCATCGAG
CAGTCCGGGGCCGCAGGGGGGTACTCAGAGGGGACCAGCCTCGAAACGAG
CTGCCCACCCTGGAAGAAGTTGATGTGCTCCGGCCATCCGTTTCAGGCTC
TCAGACAGGTGTAA
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