EsuBft1018_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1018_6a-0001
Unique Name	EsuBft1018_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_161	contig	Scaffold_161:316980..319912 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_012129-tr
ProteomeId	EsuBft1018_6
Protein domains	IPR027124
Protein domains	IPR005135
Protein domains	PTHR23227
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	33208\|Metazoa
Length	175
Hectar predicted targeting category	other localisation
Evalue	1.07e-18
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,3AJJK@33154\|Opisthokonta,3BZRE@33208\|Metazoa,3DG9F@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Endonuclease-reverse transcriptase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1018_6a	EsuBft1018_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_161 316980..319912 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1018_6a-0001-exon	agat-exon-61897	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 316980..317727 -
EsuBft1018_6a-0001-exon	EsuBft1018_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 318860..319313 -
EsuBft1018_6a-0001-exon	agat-exon-61896	Ectocarpus subulatus male Bft15b	exon	Scaffold_161 319358..319912 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1018_6a-0001-exon	agat-three_prime_utr-196	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_161 316980..317431 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1018_6a-0001-cds	EsuBft1018_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_161 317432..317727 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1018_6a-0001	EsuBft1018_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_161 317432..319912 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_161:316980..319912-
coding sequence from alignment at Scaffold_161:316980..319912-

spliced messenger RNA

>EsuBft1018_6a-0001 ID=EsuBft1018_6a-0001|Name=EsuBft1018_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1757bp|location=Sequence derived from alignment at Scaffold_161:316980..319912- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTACAGTGTGGGCGAGGAAGGTAGAACAGTGGAGTGCATTAGCCT
GAGGTTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTT
TCGTGGTGGGGTACGCCCCCACGGATACTGTCCGCACCACCGCGGGCGGT
GATGTTAACGCCAAGGACTCCTTCTGGACTGCTGTCGACGCAGCGATCCG
GGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGGACGCCAACGCAC
GCACTGGTAGGAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCG
TACGGACGCGACAGTATGAACAACAACGGGGAACGACTCCTTGGACCGGC
ATCAGACAACCAACTCTCCCTGACCAACACGTACTTCCGGACACCGAAAG
GTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGAAGTACCAC
CTCGACTTCATCCTCATGCGTCAGACGAACCGGCGTTTCGTGCGTAATGT
CTCCGTCAAACTTGTCGACTTCAAAGACTCGGACCACAACCTCGTGCTTA
CGACTGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGG
AGAGCACTGGAAAAGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAA
GAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATCG
ACGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAAGACGAGGAC
GGCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTG
GTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGG
CTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCA
TCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGC
CGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACG
GAGATCAAGCGGAGCACTACACGAATCTCAATGGGACCCACCGCCAGTTC
CTTACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCT
GTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGG
CCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATG
GAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGG
CGTGGGATACCGGGGCGGGCAGGACAGCGACTGGGTGTCTCGCCTTGGAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGT
ACCCGGCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCTATAC
TCCTTTATGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGTTTCT
TTTTTTCATGACCTCCCTGCCTACTCTGCTGTATTGGGTACCGTGATCTC
GCTTTGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTCTGCCCATCTGCC
GCCTCATTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAATGC
CTGGTGCTGGTACGTTACCCTTTGATTTTTTCTAGGGCGGGTGTGGGCAG
CGTCCTCCTTTATTTTTGTTTTTGTCTTATTTTGATCGGTTTCCGAGGGC
TCTTTTCTCGAACGGTCGGTGCGATACCTGTTCTTTTCTTTCTATCATTT
TTTTTTC

protein sequence of EsuBft1018_6a-0001

>EsuBft1018_6 ID=EsuBft1018_6|Name=EsuBft1018_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=435bp
MWYSVGEEGRTVECISLRLMKVRLQIGRTCGVTFVVGYAPTDTVRTTAGG
DVNAKDSFWTAVDAAIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGA
YGRDSMNNNGERLLGPASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKKYH
LDFILMRQTNRRFVRNVSVKLVDFKDSDHNLVLTTAMLKAARKKRSIARW
RALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDED
GKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIP
SLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQAEHYTNLNGTHRQF
LTRCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRM
EDSRLPKRMLLGAMAGGVGYRGGQDSDWVSRLGXX

mRNA from alignment at Scaffold_161:316980..319912-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1018_6a-0001 ID=EsuBft1018_6a-0001|Name=EsuBft1018_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2933bp|location=Sequence derived from alignment at Scaffold_161:316980..319912- (Ectocarpus subulatus male Bft15b)
ATGTGGTACAGTGTGGGCGAGGAAGGTAGAACAGTGGAGTGCATTAGCCT
GAGGTTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTT
TCGTGGTGGGGTACGCCCCCACGGATACTGTCCGCACCACCGCGGGCGGT
GATGTTAACGCCAAGGACTCCTTCTGGACTGCTGTCGACGCAGCGATCCG
GGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGGACGCCAACGCAC
GCACTGGTAGGAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCG
TACGGACGCGACAGTATGAACAACAACGGGGAACGACTCCTTGGACCGGC
ATCAGACAACCAACTCTCCCTGACCAACACGTACTTCCGGACACCGAAAG
GTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGAAGTACCAC
CTCGACTTCATCCTCATGCGTCAGACGAACCGGCGTTTCGTGCGTAATGT
CTCCGTCAAACTTGTCGACTTCAAAGACTCGGACCACAACCTCGTGCTTA
CGACTGTCCGCCTCCCCCCCTGAACAGCGCATGCGAGGCGACCCTGAAGG
CGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGAGCA
CTGGAAAAGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGAGCCG
CGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATCGACGTCG
AAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAAGACGAGGACGGCAAG
GTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTGGTTCCA
CAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTGACA
AGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTA
CTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTCGG
GCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATC
AAGGTTTCCTCCGCGAATTCCACGCCATTGTCGTGGACGTGTAGCAGACT
GGCGACGTACCACAGCAGTGGAAGGATGCCACCATCAAATTGCTGTTCAA
GAAGGGGGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCAACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTGGTGTAGAC
TGTCCTGTATGCGTGCGCCTCGTGGAGCCTAACAGCGGAGCACTACACGA
ATCTCAATGGGACCCACCGCCAGTTCCTTACACGGTGCATCGGCTGGAGC
AAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCA
GGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACTGT
GTTTCGCGGGCTTTGTTATGCGCATGGAGGACAGCCGCCTCCCCAAGCGC
ATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGA
CAGCGACTGGGTGTCTCGCCTTGGAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGTACCCGGCTGATGTTGTTGCGCCCT
GTTTCCCTCCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTTGTATT
GCCTTCGGCCTCTGTGCTGTGTTTCTTTTTTTCATGACCTCCCTGCCTAC
TCTGCTGTATTGGGTACCGTGATCTCGCTTTGCTGTTGCCTTTGTTTTTG
TACGTCTGGCTGTCTGCCCATCTGCCGCCTCATTGTCCTGTTTGCTCCGT
TACTCCCATGCCCTGGTGCGTAATGCCTGGTGCTGGTACGTTACCCTTTG
ATTTTTTCTAGGGCGGGTGTGGGCAGCGTCCTCCTTTATTTTTGTTTTTG
TCTTATTTTGATCGGTTTCCGAGGGCTCTTTTCTCGAACGGTCGGTGCGA
TACCTGTTCTTTTCTTTCTATCATTTTTTTTTC

Coding sequence (CDS) from alignment at Scaffold_161:316980..319912-

>EsuBft1018_6a-0001 ID=EsuBft1018_6a-0001|Name=EsuBft1018_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1305bp|location=Sequence derived from alignment at Scaffold_161:316980..319912- (Ectocarpus subulatus male Bft15b)
ATGTGGTACAGTGTGGGCGAGGAAGGTAGAACAGTGGAGTGCATTAGCCT
GAGGTTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTT
TCGTGGTGGGGTACGCCCCCACGGATACTGTCCGCACCACCGCGGGCGGT
GATGTTAACGCCAAGGACTCCTTCTGGACTGCTGTCGACGCAGCGATCCG
GGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGGACGCCAACGCAC
GCACTGGTAGGAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCG
TACGGACGCGACAGTATGAACAACAACGGGGAACGACTCCTTGGACCGGC
ATCAGACAACCAACTCTCCCTGACCAACACGTACTTCCGGACACCGAAAG
GTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGAAGTACCAC
CTCGACTTCATCCTCATGCGTCAGACGAACCGGCGTTTCGTGCGTAATGT
CTCCGTCAAACTTGTCGACTTCAAAGACTCGGACCACAACCTCGTGCTTA
CGACTGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGG
AGAGCACTGGAAAAGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAA
GAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGATGATCG
ACGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAAGACGAGGAC
GGCAAGGTCCTTCGGGACCCCACGTTTATTCGCCAACGGTGGGCACGGTG
GTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGG
CTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCA
TCTCTACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGC
CGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACG
GAGATCAAGCGGAGCACTACACGAATCTCAATGGGACCCACCGCCAGTTC
CTTACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCT
GTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGG
CCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATG
GAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGG
CGTGGGATACCGGGGCGGGCAGGACAGCGACTGGGTGTCTCGCCTTGGAG
NNNNN