EsuBft1017_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1017_9a-0001
Unique Name	EsuBft1017_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:553423..555860 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FSK2
ProteomeId	EsuBft1017_9
Protein domains	IPR006912
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	154
Hectar predicted targeting category	other localisation
Evalue	2.3e-52
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Plant transposon protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0016788

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_9a	EsuBft1017_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 553423..555860 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_9a-0001-exon	agat-exon-30169	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 553423..553865 +
EsuBft1017_9a-0001-exon	agat-exon-30170	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 554611..554917 +
EsuBft1017_9a-0001-exon	EsuBft1017_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 555070..555860 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_9a-0001-cds	EsuBft1017_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 553423..553865 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_9a-0001-exon	agat-three_prime_utr-190	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 555676..555860 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_9a-0001	EsuBft1017_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 553423..555675 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:553423..555860+
coding sequence from alignment at Scaffold_189:553423..555860+

spliced messenger RNA

>EsuBft1017_9a-0001 ID=EsuBft1017_9a-0001|Name=EsuBft1017_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1541bp|location=Sequence derived from alignment at Scaffold_189:553423..555860+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGGGTTTTGATGACCTGCTGCCTTCCACCGTGCTCTCGGTGGC
CCTCTCGGCCCTTCACCAAGTCCAGCAGCGAAGCCGCACGCATCGCACGC
TAGCCCAGTGGGCCGTCGCACTACGCGCCTTCGACGACGCCTTCGAGTGG
GAGGATAGCGGTGAGCAGGATGGTCCGCCCGTGAAGCGTTCGAGGCAAGT
GAAGGAGCGAAGAGATTGGAGTACCTCGGCGTGGTGGCTGCAGCTCCAAA
ACGCAGACCTGTTGGACCACACCACAGAGGCGGCGAAGGTCTTCCGCACT
CGCTTCCGGGTACCTCACGCCTTCTTTCTAGAACTGGTGAAGATGGCGAG
GGGGAAGAAGTGGTTCTCTGTGCGAGAAAAGGATGCTGTCGGACGTCGGG
GGATACCAATTGAACTGAAGTTGAGCTCCTATCGGTCTGGACTGTTGTTG
TTGGTGGTGAACTGCAGCGATGTGCCGAGCATTGAGCCGATGCGTTGGAT
CGTAGTGCACAACTTCACCCGCTGGTATCGGAGAGTACACAGCAGTACTG
CTGTGGTGGCAGAACATGGATCGATGGGGAACGTGCCTTGTACCGTCACA
CGAACGTCGCATCGCTGGCATAGGAAGTACTGCTGTAGACGTCCCACAGC
CAGGGAAAAACGGCGTACGCTCTGGTTTCGCTTGCACACTTTCCAAACGC
GCGGGCACCTACGCGGACACGCCACTACCTTCGACGCAGCGTCGACTAAA
ATATTGACGGCCCTCCAGATATTAGGCAGGGGCAACTGCTTCGACGACAT
ATGTCAACTGTCTTTGATGAGCAAGCCGATGGCGGCGGCTACGTTCCACA
AGTTCTGCAAGCACTTTGCGCAGGAGCTGTTCGAGGAGCACATATACCTT
CCTACCGGATCGTACCAGGATGAAGTCATGTGCATGTACGACAAGCTGGG
GATGACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGATGGGGCA
TGTGCCCGTTCACCCTTGGCCGTTCTTATACGGGCAAGGAAGGATTCCCG
ACCATCGCCTACCAAGTGACAGTCGACCACGCGGGTCGAGCCATCGCGAT
CACCAGCGGTTTCACCGGAGCAACTAATGACAAGACCATCATCCGCTACG
ACGCAGGTGTCCACACCATCAAGACGGATGCCCAGTACACGAAGCGCACG
TACAAGCTCCGGAGGGCGGATGGAACATTTCGGGAGCGCAAGGGGTGCTA
CTATATCGTTGACAACGGGTACCACGAGGTAAATTCACTTGGCCATCCTA
ATAGAATGAGAGAGGATTATCCCCTGGCGGGAAACACTCGAGCAGGGCTA
CTGTAGTTCAACCGTAGGCAGACCCAGTTCACTTTGTCGTTTGTCGGCCT
TAGAGAGCGTTGTTTCCGGCGCCAACCAAACATAAAAATCTCCTTCCGCT
TACGCCTACTTGATGCCGGGAAATGGGGACAACGTGGATGCCACAACGTA
ACACATCACACATCGATGGTGTGTGTAGAAGTCGGGCAAGT

protein sequence of EsuBft1017_9a-0001

>EsuBft1017_9 ID=EsuBft1017_9|Name=EsuBft1017_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=451bp
MASGFDDLLPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEW
EDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRT
RFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLL
LVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVT
RTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTK
ILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYL
PTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFP
TIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRT
YKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNRMREDYPLAGNTRAGL
L

mRNA from alignment at Scaffold_189:553423..555860+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1017_9a-0001 ID=EsuBft1017_9a-0001|Name=EsuBft1017_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2438bp|location=Sequence derived from alignment at Scaffold_189:553423..555860+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCGGGTTTTGATGACCTGCTGCCTTCCACCGTGCTCTCGGTGGC
CCTCTCGGCCCTTCACCAAGTCCAGCAGCGAAGCCGCACGCATCGCACGC
TAGCCCAGTGGGCCGTCGCACTACGCGCCTTCGACGACGCCTTCGAGTGG
GAGGATAGCGGTGAGCAGGATGGTCCGCCCGTGAAGCGTTCGAGGCAAGT
GAAGGAGCGAAGAGATTGGAGTACCTCGGCGTGGTGGCTGCAGCTCCAAA
ACGCAGACCTGTTGGACCACACCACAGAGGCGGCGAAGGTCTTCCGCACT
CGCTTCCGGGTACCTCACGCCTTCTTTCTAGAACTGGTGAAGATGGCGAG
GGGGAAGAAGTGGTTCTCTGTGCGAGAAAAGGATGCTGTCGGACGTCGGG
GGATACCAATTGAACTGAAGTTGAGCTCCTATCGGTCTGGACTGTACTGC
TGTGGCACCGCTCGCCCCTTGTACCCATCGTCTCTTCGAGACACTTTGCA
CCTGTTGTGCTATTCGTGGTCCCTTTATACATATACTTCGTTGTTCAGTC
CAGCCGTGCACGGTTGCTCTGATAGTACACAGCAGCGTACCCTCTGGTGC
TCTGCTGTCAAGGTCTTTTTGACGATACACAAAGCACCGGTTGTGTTTTT
GCTTAACAGATCGCAGTATTTAGTTCCGCCGTGCAAGGTGGCTCTGGCAT
GCAGCGTACTTCCCGTCGTCCGTGTGTGATACACCTACACCGCTCGCCGT
ATGTACGTTCAACACAAATAAATCAGGTGGGGAACAGCAGTGGTATTGCG
AGCATGTGCCGGTGCGTTTGGGTCGTGTTATACAGCAACAACCTAATGCA
CGCGTTTTCCAACTGAGTACACTACGCATGTCAACAGCAAGGTGCTCACG
AACGCCTTGTAGCAGGCAGATACACAGCAGTCAAGCTGCTGCTACTCAAG
TGCTTCAATTAAGTTGGCCAATGGCCGTGAGATACATGGTATGCACACAG
AAGCTTGTGTATTTCGTACTTGTGCGAGATACATACGTCCAGTGACATTT
GGTATATGCCAGTTCGATGTACGTTGGCTTTGGCTTCAGGTGGCGAAACC
GCCGTTTGTCTGTCTCATTGGACGTTCACCCACCGTCACCCTATTTGACT
TTCAATGCGTCAATGGTGCAACACACGAGTAGAAACAGGTTGTTGTTGGT
GGTGAACTGCAGCGATGTGCCGAGCATTGAGCCGATGCGTTGGATCGTAG
TGCACAACTTCACCCGCTGGTATCGGAGAGTACACAGCAGTACTGCTGTG
GTGGCAGAACATGGATCGATGGGGAACGTGCCTTGTACCGTCACACGAAC
GTCGCATCGCTGGCATAGGAAGTACTGCTGTAGACGTCCCACAGCCAGGG
AAAAACGGCGTACGCTCTGGTTTCGCTTGCACACTTTCCAAACGCGCGGG
CACCTACGCGGACACGCCACTACCTTCGACGCAGCGTCGACTAAAGTATT
GCTGACCCTGCTCTAATGGACCGCTGCGTTGACTCTGCTTCAACAACGAG
AACCACAGTACTATGCACCGTGACTCACGATTTCGTCCGCATACGCCCCC
GACCCCACCTCTCTTCCACACCCCATACGCAAAATGAAATGCAACAGATA
TTGACGGCCCTCCAGATATTAGGCAGGGGCAACTGCTTCGACGACATATG
TCAACTGTCTTTGATGAGCAAGCCGATGGCGGCGGCTACGTTCCACAAGT
TCTGCAAGCACTTTGCGCAGGAGCTGTTCGAGGAGCACATATACCTTCCT
ACCGGATCGTACCAGGATGAAGTCATGTGCATGTACGACAAGCTGGGGAT
GACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGATGGGGCATGT
GCCCGTTCACCCTTGGCCGTTCTTATACGGGCAAGGAAGGATTCCCGACC
ATCGCCTACCAAGTGACAGTCGACCACGCGGGTCGAGCCATCGCGATCAC
CAGCGGTTTCACCGGAGCAACTAATGACAAGACCATCATCCGCTACGACG
CAGGTGTCCACACCATCAAGACGGATGCCCAGTACACGAAGCGCACGTAC
AAGCTCCGGAGGGCGGATGGAACATTTCGGGAGCGCAAGGGGTGCTACTA
TATCGTTGACAACGGGTACCACGAGGTAAATTCACTTGGCCATCCTAATA
GAATGAGAGAGGATTATCCCCTGGCGGGAAACACTCGAGCAGGGCTACTG
TAGTTCAACCGTAGGCAGACCCAGTTCACTTTGTCGTTTGTCGGCCTTAG
AGAGCGTTGTTTCCGGCGCCAACCAAACATAAAAATCTCCTTCCGCTTAC
GCCTACTTGATGCCGGGAAATGGGGACAACGTGGATGCCACAACGTAACA
CATCACACATCGATGGTGTGTGTAGAAGTCGGGCAAGT

Coding sequence (CDS) from alignment at Scaffold_189:553423..555860+

>EsuBft1017_9a-0001 ID=EsuBft1017_9a-0001|Name=EsuBft1017_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1356bp|location=Sequence derived from alignment at Scaffold_189:553423..555860+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCGGGTTTTGATGACCTGCTGCCTTCCACCGTGCTCTCGGTGGC
CCTCTCGGCCCTTCACCAAGTCCAGCAGCGAAGCCGCACGCATCGCACGC
TAGCCCAGTGGGCCGTCGCACTACGCGCCTTCGACGACGCCTTCGAGTGG
GAGGATAGCGGTGAGCAGGATGGTCCGCCCGTGAAGCGTTCGAGGCAAGT
GAAGGAGCGAAGAGATTGGAGTACCTCGGCGTGGTGGCTGCAGCTCCAAA
ACGCAGACCTGTTGGACCACACCACAGAGGCGGCGAAGGTCTTCCGCACT
CGCTTCCGGGTACCTCACGCCTTCTTTCTAGAACTGGTGAAGATGGCGAG
GGGGAAGAAGTGGTTCTCTGTGCGAGAAAAGGATGCTGTCGGACGTCGGG
GGATACCAATTGAACTGAAGTTGAGCTCCTATCGGTCTGGACTGTTGTTG
TTGGTGGTGAACTGCAGCGATGTGCCGAGCATTGAGCCGATGCGTTGGAT
CGTAGTGCACAACTTCACCCGCTGGTATCGGAGAGTACACAGCAGTACTG
CTGTGGTGGCAGAACATGGATCGATGGGGAACGTGCCTTGTACCGTCACA
CGAACGTCGCATCGCTGGCATAGGAAGTACTGCTGTAGACGTCCCACAGC
CAGGGAAAAACGGCGTACGCTCTGGTTTCGCTTGCACACTTTCCAAACGC
GCGGGCACCTACGCGGACACGCCACTACCTTCGACGCAGCGTCGACTAAA
ATATTGACGGCCCTCCAGATATTAGGCAGGGGCAACTGCTTCGACGACAT
ATGTCAACTGTCTTTGATGAGCAAGCCGATGGCGGCGGCTACGTTCCACA
AGTTCTGCAAGCACTTTGCGCAGGAGCTGTTCGAGGAGCACATATACCTT
CCTACCGGATCGTACCAGGATGAAGTCATGTGCATGTACGACAAGCTGGG
GATGACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGATGGGGCA
TGTGCCCGTTCACCCTTGGCCGTTCTTATACGGGCAAGGAAGGATTCCCG
ACCATCGCCTACCAAGTGACAGTCGACCACGCGGGTCGAGCCATCGCGAT
CACCAGCGGTTTCACCGGAGCAACTAATGACAAGACCATCATCCGCTACG
ACGCAGGTGTCCACACCATCAAGACGGATGCCCAGTACACGAAGCGCACG
TACAAGCTCCGGAGGGCGGATGGAACATTTCGGGAGCGCAAGGGGTGCTA
CTATATCGTTGACAACGGGTACCACGAGGTAAATTCACTTGGCCATCCTA
ATAGAATGAGAGAGGATTATCCCCTGGCGGGAAACACTCGAGCAGGGCTA
CTGTAG