Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSK2 |
| ProteomeId | EsuBft1017_9 |
| Protein domains | IPR006912 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 154 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.3e-52 |
| EggNOG OGs | 2E2RF@1|root,2S9YA@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Plant transposon protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0016788 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1017_9a-0001 ID=EsuBft1017_9a-0001|Name=EsuBft1017_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1541bp|location=Sequence derived from alignment at Scaffold_189:553423..555860+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTTCGGGTTTTGATGACCTGCTGCCTTCCACCGTGCTCTCGGTGGC
CCTCTCGGCCCTTCACCAAGTCCAGCAGCGAAGCCGCACGCATCGCACGC
TAGCCCAGTGGGCCGTCGCACTACGCGCCTTCGACGACGCCTTCGAGTGG
GAGGATAGCGGTGAGCAGGATGGTCCGCCCGTGAAGCGTTCGAGGCAAGT
GAAGGAGCGAAGAGATTGGAGTACCTCGGCGTGGTGGCTGCAGCTCCAAA
ACGCAGACCTGTTGGACCACACCACAGAGGCGGCGAAGGTCTTCCGCACT
CGCTTCCGGGTACCTCACGCCTTCTTTCTAGAACTGGTGAAGATGGCGAG
GGGGAAGAAGTGGTTCTCTGTGCGAGAAAAGGATGCTGTCGGACGTCGGG
GGATACCAATTGAACTGAAGTTGAGCTCCTATCGGTCTGGACTGTTGTTG
TTGGTGGTGAACTGCAGCGATGTGCCGAGCATTGAGCCGATGCGTTGGAT
CGTAGTGCACAACTTCACCCGCTGGTATCGGAGAGTACACAGCAGTACTG
CTGTGGTGGCAGAACATGGATCGATGGGGAACGTGCCTTGTACCGTCACA
CGAACGTCGCATCGCTGGCATAGGAAGTACTGCTGTAGACGTCCCACAGC
CAGGGAAAAACGGCGTACGCTCTGGTTTCGCTTGCACACTTTCCAAACGC
GCGGGCACCTACGCGGACACGCCACTACCTTCGACGCAGCGTCGACTAAA
ATATTGACGGCCCTCCAGATATTAGGCAGGGGCAACTGCTTCGACGACAT
ATGTCAACTGTCTTTGATGAGCAAGCCGATGGCGGCGGCTACGTTCCACA
AGTTCTGCAAGCACTTTGCGCAGGAGCTGTTCGAGGAGCACATATACCTT
CCTACCGGATCGTACCAGGATGAAGTCATGTGCATGTACGACAAGCTGGG
GATGACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGATGGGGCA
TGTGCCCGTTCACCCTTGGCCGTTCTTATACGGGCAAGGAAGGATTCCCG
ACCATCGCCTACCAAGTGACAGTCGACCACGCGGGTCGAGCCATCGCGAT
CACCAGCGGTTTCACCGGAGCAACTAATGACAAGACCATCATCCGCTACG
ACGCAGGTGTCCACACCATCAAGACGGATGCCCAGTACACGAAGCGCACG
TACAAGCTCCGGAGGGCGGATGGAACATTTCGGGAGCGCAAGGGGTGCTA
CTATATCGTTGACAACGGGTACCACGAGGTAAATTCACTTGGCCATCCTA
ATAGAATGAGAGAGGATTATCCCCTGGCGGGAAACACTCGAGCAGGGCTA
CTGTAGTTCAACCGTAGGCAGACCCAGTTCACTTTGTCGTTTGTCGGCCT
TAGAGAGCGTTGTTTCCGGCGCCAACCAAACATAAAAATCTCCTTCCGCT
TACGCCTACTTGATGCCGGGAAATGGGGACAACGTGGATGCCACAACGTA
ACACATCACACATCGATGGTGTGTGTAGAAGTCGGGCAAGT back to topprotein sequence of EsuBft1017_9a-0001 >EsuBft1017_9 ID=EsuBft1017_9|Name=EsuBft1017_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=451bp
MASGFDDLLPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEW
EDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRT
RFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLL
LVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVT
RTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTK
ILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYL
PTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFP
TIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRT
YKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNRMREDYPLAGNTRAGL
L back to topmRNA from alignment at Scaffold_189:553423..555860+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1017_9a-0001 ID=EsuBft1017_9a-0001|Name=EsuBft1017_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2438bp|location=Sequence derived from alignment at Scaffold_189:553423..555860+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCGGGTTTTGATGACCTGCTGCCTTCCACCGTGCTCTCGGTGGC
CCTCTCGGCCCTTCACCAAGTCCAGCAGCGAAGCCGCACGCATCGCACGC
TAGCCCAGTGGGCCGTCGCACTACGCGCCTTCGACGACGCCTTCGAGTGG
GAGGATAGCGGTGAGCAGGATGGTCCGCCCGTGAAGCGTTCGAGGCAAGT
GAAGGAGCGAAGAGATTGGAGTACCTCGGCGTGGTGGCTGCAGCTCCAAA
ACGCAGACCTGTTGGACCACACCACAGAGGCGGCGAAGGTCTTCCGCACT
CGCTTCCGGGTACCTCACGCCTTCTTTCTAGAACTGGTGAAGATGGCGAG
GGGGAAGAAGTGGTTCTCTGTGCGAGAAAAGGATGCTGTCGGACGTCGGG
GGATACCAATTGAACTGAAGTTGAGCTCCTATCGGTCTGGACTGTACTGC
TGTGGCACCGCTCGCCCCTTGTACCCATCGTCTCTTCGAGACACTTTGCA
CCTGTTGTGCTATTCGTGGTCCCTTTATACATATACTTCGTTGTTCAGTC
CAGCCGTGCACGGTTGCTCTGATAGTACACAGCAGCGTACCCTCTGGTGC
TCTGCTGTCAAGGTCTTTTTGACGATACACAAAGCACCGGTTGTGTTTTT
GCTTAACAGATCGCAGTATTTAGTTCCGCCGTGCAAGGTGGCTCTGGCAT
GCAGCGTACTTCCCGTCGTCCGTGTGTGATACACCTACACCGCTCGCCGT
ATGTACGTTCAACACAAATAAATCAGGTGGGGAACAGCAGTGGTATTGCG
AGCATGTGCCGGTGCGTTTGGGTCGTGTTATACAGCAACAACCTAATGCA
CGCGTTTTCCAACTGAGTACACTACGCATGTCAACAGCAAGGTGCTCACG
AACGCCTTGTAGCAGGCAGATACACAGCAGTCAAGCTGCTGCTACTCAAG
TGCTTCAATTAAGTTGGCCAATGGCCGTGAGATACATGGTATGCACACAG
AAGCTTGTGTATTTCGTACTTGTGCGAGATACATACGTCCAGTGACATTT
GGTATATGCCAGTTCGATGTACGTTGGCTTTGGCTTCAGGTGGCGAAACC
GCCGTTTGTCTGTCTCATTGGACGTTCACCCACCGTCACCCTATTTGACT
TTCAATGCGTCAATGGTGCAACACACGAGTAGAAACAGGTTGTTGTTGGT
GGTGAACTGCAGCGATGTGCCGAGCATTGAGCCGATGCGTTGGATCGTAG
TGCACAACTTCACCCGCTGGTATCGGAGAGTACACAGCAGTACTGCTGTG
GTGGCAGAACATGGATCGATGGGGAACGTGCCTTGTACCGTCACACGAAC
GTCGCATCGCTGGCATAGGAAGTACTGCTGTAGACGTCCCACAGCCAGGG
AAAAACGGCGTACGCTCTGGTTTCGCTTGCACACTTTCCAAACGCGCGGG
CACCTACGCGGACACGCCACTACCTTCGACGCAGCGTCGACTAAAGTATT
GCTGACCCTGCTCTAATGGACCGCTGCGTTGACTCTGCTTCAACAACGAG
AACCACAGTACTATGCACCGTGACTCACGATTTCGTCCGCATACGCCCCC
GACCCCACCTCTCTTCCACACCCCATACGCAAAATGAAATGCAACAGATA
TTGACGGCCCTCCAGATATTAGGCAGGGGCAACTGCTTCGACGACATATG
TCAACTGTCTTTGATGAGCAAGCCGATGGCGGCGGCTACGTTCCACAAGT
TCTGCAAGCACTTTGCGCAGGAGCTGTTCGAGGAGCACATATACCTTCCT
ACCGGATCGTACCAGGATGAAGTCATGTGCATGTACGACAAGCTGGGGAT
GACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGATGGGGCATGT
GCCCGTTCACCCTTGGCCGTTCTTATACGGGCAAGGAAGGATTCCCGACC
ATCGCCTACCAAGTGACAGTCGACCACGCGGGTCGAGCCATCGCGATCAC
CAGCGGTTTCACCGGAGCAACTAATGACAAGACCATCATCCGCTACGACG
CAGGTGTCCACACCATCAAGACGGATGCCCAGTACACGAAGCGCACGTAC
AAGCTCCGGAGGGCGGATGGAACATTTCGGGAGCGCAAGGGGTGCTACTA
TATCGTTGACAACGGGTACCACGAGGTAAATTCACTTGGCCATCCTAATA
GAATGAGAGAGGATTATCCCCTGGCGGGAAACACTCGAGCAGGGCTACTG
TAGTTCAACCGTAGGCAGACCCAGTTCACTTTGTCGTTTGTCGGCCTTAG
AGAGCGTTGTTTCCGGCGCCAACCAAACATAAAAATCTCCTTCCGCTTAC
GCCTACTTGATGCCGGGAAATGGGGACAACGTGGATGCCACAACGTAACA
CATCACACATCGATGGTGTGTGTAGAAGTCGGGCAAGT back to topCoding sequence (CDS) from alignment at Scaffold_189:553423..555860+ >EsuBft1017_9a-0001 ID=EsuBft1017_9a-0001|Name=EsuBft1017_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1356bp|location=Sequence derived from alignment at Scaffold_189:553423..555860+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCGGGTTTTGATGACCTGCTGCCTTCCACCGTGCTCTCGGTGGC
CCTCTCGGCCCTTCACCAAGTCCAGCAGCGAAGCCGCACGCATCGCACGC
TAGCCCAGTGGGCCGTCGCACTACGCGCCTTCGACGACGCCTTCGAGTGG
GAGGATAGCGGTGAGCAGGATGGTCCGCCCGTGAAGCGTTCGAGGCAAGT
GAAGGAGCGAAGAGATTGGAGTACCTCGGCGTGGTGGCTGCAGCTCCAAA
ACGCAGACCTGTTGGACCACACCACAGAGGCGGCGAAGGTCTTCCGCACT
CGCTTCCGGGTACCTCACGCCTTCTTTCTAGAACTGGTGAAGATGGCGAG
GGGGAAGAAGTGGTTCTCTGTGCGAGAAAAGGATGCTGTCGGACGTCGGG
GGATACCAATTGAACTGAAGTTGAGCTCCTATCGGTCTGGACTGTTGTTG
TTGGTGGTGAACTGCAGCGATGTGCCGAGCATTGAGCCGATGCGTTGGAT
CGTAGTGCACAACTTCACCCGCTGGTATCGGAGAGTACACAGCAGTACTG
CTGTGGTGGCAGAACATGGATCGATGGGGAACGTGCCTTGTACCGTCACA
CGAACGTCGCATCGCTGGCATAGGAAGTACTGCTGTAGACGTCCCACAGC
CAGGGAAAAACGGCGTACGCTCTGGTTTCGCTTGCACACTTTCCAAACGC
GCGGGCACCTACGCGGACACGCCACTACCTTCGACGCAGCGTCGACTAAA
ATATTGACGGCCCTCCAGATATTAGGCAGGGGCAACTGCTTCGACGACAT
ATGTCAACTGTCTTTGATGAGCAAGCCGATGGCGGCGGCTACGTTCCACA
AGTTCTGCAAGCACTTTGCGCAGGAGCTGTTCGAGGAGCACATATACCTT
CCTACCGGATCGTACCAGGATGAAGTCATGTGCATGTACGACAAGCTGGG
GATGACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGATGGGGCA
TGTGCCCGTTCACCCTTGGCCGTTCTTATACGGGCAAGGAAGGATTCCCG
ACCATCGCCTACCAAGTGACAGTCGACCACGCGGGTCGAGCCATCGCGAT
CACCAGCGGTTTCACCGGAGCAACTAATGACAAGACCATCATCCGCTACG
ACGCAGGTGTCCACACCATCAAGACGGATGCCCAGTACACGAAGCGCACG
TACAAGCTCCGGAGGGCGGATGGAACATTTCGGGAGCGCAAGGGGTGCTA
CTATATCGTTGACAACGGGTACCACGAGGTAAATTCACTTGGCCATCCTA
ATAGAATGAGAGAGGATTATCCCCTGGCGGGAAACACTCGAGCAGGGCTA
CTGTAG back to top
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