EsuBft1017_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1017_7a-0001
Unique NameEsuBft1017_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:542036..543108 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1017_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length89
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_7aEsuBft1017_7aEctocarpus subulatus male Bft15bgeneScaffold_189 542036..543108 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_7a-0001-exonEsuBft1017_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 542036..542104 -
EsuBft1017_7a-0001-exonagat-exon-30164Ectocarpus subulatus male Bft15bexonScaffold_189 542284..543108 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_7a-0001-exonagat-three_prime_utr-187Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 542036..542104 -
EsuBft1017_7a-0001-exonagat-three_prime_utr-188Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 542284..542655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_7a-0001-cdsEsuBft1017_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 542656..543108 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_7a-0001EsuBft1017_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 542656..543108 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1017_7a-0001 ID=EsuBft1017_7a-0001|Name=EsuBft1017_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=894bp|location=Sequence derived from alignment at Scaffold_189:542036..543108- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGAAAGAAAGACCAGCTACCGCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGCTTGCTCCAGCCGATACACCGTGTCAGGAACTGGCGGTGGGT
CCCATTCAGCTTGGTGTAGTGCTCCGCTGCCAGGCTCCACGAGGCGCACC
CGTATAGGAGGGTCTGCACCACTTCAGCCTGGAGTAGTCGGATCTTGAGC
TGGCGGTTGGCCCGTTTCCTGTCGTACATCGAAGTGCTGTTCCGGCGGTA
GCACTTCCATGCTCGGCAGATGCGGCTCGTGATCTCCCGGTCGACCTTCC
CATCCGCGCAGATGGTACGTCCGAGCTCGTTATTAATAAAACCATAATCG
ACTTCGTAAGTCGCGAGGAAAGGGATTGCTGTACCCTTCTCGCG
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protein sequence of EsuBft1017_7a-0001

>EsuBft1017_7 ID=EsuBft1017_7|Name=EsuBft1017_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=151bp
MIERKTSYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
X
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mRNA from alignment at Scaffold_189:542036..543108-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1017_7a-0001 ID=EsuBft1017_7a-0001|Name=EsuBft1017_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1073bp|location=Sequence derived from alignment at Scaffold_189:542036..543108- (Ectocarpus subulatus male Bft15b)
ATGATAGAAAGAAAGACCAGCTACCGCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGCTTGCTCCAGCCGATACACCGTGTCAGGAACTGGCGGTGGGT
CCCATTCAGCTTGGTGTAGTGCTCCGCTGCCAGGCTCCACGAGGCGCACC
CGTATAGGAGGGTCTGCACCACTTCAGCCTGGAGTAGTCGGATCTTGAGC
TGGCGGTTGGCCCGTTTCCTGTCGTACATCGAAGTGCTGTTCCGGCGGTA
GCACTTCCATGCTCGGCAGATGCGGCTCGTGATCTCCCGGTCGACCTTCC
CATCCGCGCAGATGGTACGTCCGAGGTACACAAACCGATCTGTCTGCTTG
TACGTCTGGCCAGCGGCGCTGACCGCGCAGCGGTGGTCTTGTCGGTAACC
TCGCAGCCTACTAAGGGCCAGGTCATGGGTTCGAGTCCCGGCAGAGTGAG
TTTTTTTCTCACTAAATAAATCCTGGTCTTGGATGAAAGCGACGCGCTGA
AAAGCTCGTTATTAATAAAACCATAATCGACTTCGTAAGTCGCGAGGAAA
GGGATTGCTGTACCCTTCTCGCG
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Coding sequence (CDS) from alignment at Scaffold_189:542036..543108-

>EsuBft1017_7a-0001 ID=EsuBft1017_7a-0001|Name=EsuBft1017_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=453bp|location=Sequence derived from alignment at Scaffold_189:542036..543108- (Ectocarpus subulatus male Bft15b)
ATGATAGAAAGAAAGACCAGCTACCGCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN
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