Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FWG8 |
| ProteomeId | EsuBft1017_3 |
| Protein domains | IPR012674 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 324 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.21e-103 |
| EggNOG OGs | 29PU5@1|root,2RX60@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1017_3a-0001 ID=EsuBft1017_3a-0001|Name=EsuBft1017_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3240bp|location=Sequence derived from alignment at Scaffold_189:491719..495507+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACGAGGACGGACGACCGAATAAAGGACGCTTTCACCACGAAGTGCCC
TCACGAGGCCGACGAGGGCGAGACGTTTCTCATCAACATGCGCGAGGTCA
TCGACCGCAGCTCTCCGGGAAGCTTCAAAGAGTACGCCTTCTACAACAAG
TGGGACAACAAGGTGCCGAATCGATGGGTCGTGGCGCTGTGGAGGTCGAA
CGAGGGGCAGTACGAGCGAGCGATACAGCTGCAGTGCGTGGAGATCCTGG
GGCGGCGGGCCTTTGTCGGCATCAACTTCCTGAGCCGCGAGCCCCTGGTG
CCCCCGCGAGCGATGTCGGAGATGTTCCAGAAGGCGAAGGCGCTCGGCCT
GGCGGGGATAGGAGGGAGCCCCGCAGAGATGGAGATCGTTCGGCACGAGG
GGTGCCGATATCCCACCTCATCGGGGAACAAGGAGAGCCGCAGTTGGGGG
TCGGCGTGGGGGGTGAACACGCTGGCGTTATAGCGACAAGCAGCTCTGCC
CTTTTCGAGGACCCAACAGATTTGTGGTGGCAGTGGGGCAGCTCCTCTCA
GCGATGGGGAGAGGAGCAGTTACTTTGGAGCTTTGAGGTGGGTGCGATGG
CAGTGTGACCCAGAAGCGAACCGAGCAGATGAGTGTCGGTCGATGATGGA
ACGCCTCATTCACCTCGACCTCGGCCTTCTTTGGACGAAACAGCGACTCT
CTCCATGCCCTGCCGCAGGGGCGGAGGGATATTCCTCGACTGGGAGCAGC
TTCAGACGCTAACGCCACGCATATTAAGCACCCTGTTGCCCTTTTTTTTC
TAATGGTTTTTCCTTTGAATTTCCGCCGGTGCACTAGCGTCATATCTGAG
AAGCGTTAGGGATGGTCTTGCGCAAGTAGCCGTAGGCCGTTTCCGCTGAG
GGTGAATGTCTCCAGGGTGTTTGGGGCAAGATTGAAGTAACAGTGAACGG
GAGGGAGGGCGAGCCGCACGGGAACCGAGCTGTTCTCGATCATGGTATTG
CAGAGGAAAGCTGTACGGGCTTTCGCGTTCCCTAGGGTTTGGAACGATGG
CATCTAGTGTCGGCTTTGCTTGTCGGATGGTCCTGGGGGAAACCGATGAG
TGAGGCGGGCTGGCGATGCACTTCATTCTAAATAGGGTGGAAGTATCACA
GAGAAGAACACAACATGTGCTAGTGTTTTCGGCGCAATTCTACGCCTTTC
GATACATGTTTGACTTATCTCAGAGGGTACAACACAGGAGAACGGGTGAG
CATAGAATTTTCATGCTCGGGAAAATATATTAGTGCATGGCGCCTCAATA
GAAGATGATGTTTGTACCGACAGAGGTGTCGGATTGAGCGGAGCGTTCGG
GTTCAATCCCCTATGGTTTTGGCATGAGGGGGTCCGGTCGATGAGAGATT
GCATATGTTTGACAAAAGTCGTGTCGCTAATGATCGCTTCTTAGGGCGGC
CTATCCTGTTGTAGGGCGGTGGTCTTGTGCAACGCGCCGCGGTGTCGAGA
CAAGAACCGGTTTTTCTTGGGGTGGTGGGTGTTCGGGTTCTACACTATCA
AACGCTCGCCAAAAAGAGAGAGAAAGGGAGCACCGAAGCCAGGTGTTCAT
TGATATTTTTAGAATATTTGTTGTTAATGGGCGTTCAACATCGAGTCATT
GAAAATTTCGTCTGGTTTTCAGTGATGCGTTAGTTGTTGTTTCTGGAACT
TTCCGGGGTTTTGGACTACATTGACTAGCGGTGTCCTGTTTTCCTTTTGA
TGGTACATGGCGCACTCTGGATGTATGCGTGCCCTTCACAGTTTCCTCGG
TCTAAGTAGCTTGCCCTAGATTGTTATCTCATGAAAACTGGCGTTATTCG
AGATCTTGAGTCGTTATATTAGCACGCATTCAAATGCTCGTAGCTGTTGG
GAGTTTGCTGGGAGGGTTGATGATGTGAGTGAGGCAGACTCAGTGTTAAA
TGTGTGATCGGACCTGTGACATTGTCACCCCGTGAGCCTCTTATGAAGTG
CCGCCAGCAAAGCAACACAGGGGGAATTTCCTTATCACACAGAGGGGAAG
TTGACTTGTAGAGTTTCATGATAAAGTTGATCATCATGGCCAGCACGCGG
CCGTTAGTTGCCGTTGGTGTTGAAGAACGTGAGCGAGTGAGTGAGTGAGC
TGGAGCAGCCGCGTTCCAATTTACAGTGCTTGTCTAGCTCTTCTATGGGC
GCCCTCCACCAGAAGGCAGCGTTGGTTCAGATTTCAAACCGAGCTGATTG
ACCACGATGAAATTCCGTGCCTCATTGGGATACGAACGGTCGACAGTTCA
CTCAACCTCGTCGTTCTCTGGTTCACCCCAAGACTATTGATCTGATTGGC
TCCCCATACACGCCTCTAGTCTCCTTTAAACAGTTCAACAAGGACACAAA
ATGTTGGAGAATGTTTCGCAACAATCCTGTCGCCGCTGACACCGCCGGCT
ACTGTTCGATCTGTTAATTTCGCCTATACTTTGTGCTGTGATAAGGGTGG
TTCTTAACGCTTCGGAAAGTAGCGAATTTTCCACGGAACGGTGACAAGAA
AATCCGGCTTTTTTTCGCTTGTTATTTTCGTGATGTCATCTCAACAAGTT
GAGTTGGTGTACTCACCATTGAACAGCGGTAAAAGCGCAATGAGCAGCAC
CCGACACGGAGGACAACACACTTAGAAAGACCCTATCCACCCGGCCTGCT
GTTTCCAGTTTTCAGCAACAACAGGCTCAGGGCAGAGTGTCGCAACCTGG
GTGTTGCTTGCGATTTCTTCAGTTTGCCAGCTCATTTTCCACGGTTGCGA
CTCCCATCTTTGACCACCACCTGCCCAAAGGTAGACGAGCTCAACAATCA
TAGGGCGGCCGCCGCGCTGACGGCCAGCATCATATAGATCGCCAACCCGA
AAGAATTAGCGTGTCGGAGGCCCTGCTGCTTTTCTGCTGCGTGGTGCCGT
GGATTGATGTTGACGTGTCCGACCAAAAAGAGAACATACATCTCGCCGCA
TTTTTTCCAACGGCACTTTCGTGAGGTGGCACACGTCTCTCACACACCTT
ATTGAGCAGCACCAAAGCACCCAATACCCACGAAGCAGTACGGCGCCGGG
AGATGGTATCATATATAGACAGCCGAACCGAAGGAATCAGCGCGTTGGAG
GTCTTGGTACTGCTGCTGCTGTACCCGTTCTACTACTGTTTCCGAGTTTG
CTATGTGTGATTGAAAAAAAAATCCCCGGCACCAACAGCA back to topprotein sequence of EsuBft1017_3a-0001 >EsuBft1017_3 ID=EsuBft1017_3|Name=EsuBft1017_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MTRTDDRIKDAFTTKCPHEADEGETFLINMREVIDRSSPGSFKEYAFYNK
WDNKVPNRWVVALWRSNEGQYERAIQLQCVEILGRRAFVGINFLSREPLV
PPRAMSEMFQKAKALGLAGIGGSPAEMEIVRHEGCRYPTSSGNKESRSWG
SAWGVNTLAL back to topmRNA from alignment at Scaffold_189:491719..495507+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1017_3a-0001 ID=EsuBft1017_3a-0001|Name=EsuBft1017_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3789bp|location=Sequence derived from alignment at Scaffold_189:491719..495507+ (Ectocarpus subulatus male Bft15b)
ATGACGAGGACGGACGACCGAATAAAGGACGCTTTCACCACGAAGTGCCC
TCACGAGGCCGACGAGGGCGAGACGTTTCTCATCAACATGCGCGAGGTCA
TCGACCGCAGCTCTCCGGGAAGCTTCAAAGAGTACGCCTTCTACAACAAG
TGGGACAACAAGGTGCCGAATCGATGGGTATTCGCGGGGTGTTTTCCTGG
TAGTAGCACCTCCTCGGGCAATCGAAGCATGTTCTTTGCGGGGTTGAATC
CGTGGAGGATGTACACGCTGCTCCTGAACGTGAAATGGCTTGCTTGTGAT
TTTTTTTCCACGTGTTGCTGTTTTTTCTATTAGAAAGACTGAAGTTCCGC
TCGCACTCGACATATTCGATTATTTTCCCATACCATAGCCCTACTAGAGT
GAGTGTTCTCTCCGAAAGAACACCGTTTGTTCGGCGTAACCATATGACAT
ACAGAGGACAGGGGGTACGGCATCAAGGCAGTTTCCGCGATTGGGTTTTC
ACTCCATCCCGTAAGGTTTTATCAACCCGCCGCTTGGGAAAATGGGCAAT
TCCCCCCATTGTGCGACATTTCCCAGATACAGTTCAATTATGCTCTTCGG
CGATTTTGGTGCTGCTGCGGTGTCTCAACGATCCCGGTCGATAGCAGAAA
ACCTCACCGGCGGGTAAACTCACATACACAGGTCGTGGCGCTGTGGAGGT
CGAACGAGGGGCAGTACGAGCGAGCGATACAGCTGCAGTGCGTGGAGATC
CTGGGGCGGCGGGCCTTTGTCGGCATCAACTTCCTGAGCCGCGAGCCCCT
GGTGCCCCCGCGAGCGATGTCGGAGATGTTCCAGAAGGCGAAGGCGCTCG
GCCTGGCGGGGATAGGAGGGAGCCCCGCAGAGATGGAGATCGTTCGGCAC
GAGGGGTGCCGATATCCCACCTCATCGGGGAACAAGGAGAGCCGCAGTTG
GGGGTCGGCGTGGGGGGTGAACACGCTGGCGTTATAGCGACAAGCAGCTC
TGCCCTTTTCGAGGACCCAACAGATTTGTGGTGGCAGTGGGGCAGCTCCT
CTCAGCGATGGGGAGAGGAGCAGTTACTTTGGAGCTTTGAGGTGGGTGCG
ATGGCAGTGTGACCCAGAAGCGAACCGAGCAGATGAGTGTCGGTCGATGA
TGGAACGCCTCATTCACCTCGACCTCGGCCTTCTTTGGACGAAACAGCGA
CTCTCTCCATGCCCTGCCGCAGGGGCGGAGGGATATTCCTCGACTGGGAG
CAGCTTCAGACGCTAACGCCACGCATATTAAGCACCCTGTTGCCCTTTTT
TTTCTAATGGTTTTTCCTTTGAATTTCCGCCGGTGCACTAGCGTCATATC
TGAGAAGCGTTAGGGATGGTCTTGCGCAAGTAGCCGTAGGCCGTTTCCGC
TGAGGGTGAATGTCTCCAGGGTGTTTGGGGCAAGATTGAAGTAACAGTGA
ACGGGAGGGAGGGCGAGCCGCACGGGAACCGAGCTGTTCTCGATCATGGT
ATTGCAGAGGAAAGCTGTACGGGCTTTCGCGTTCCCTAGGGTTTGGAACG
ATGGCATCTAGTGTCGGCTTTGCTTGTCGGATGGTCCTGGGGGAAACCGA
TGAGTGAGGCGGGCTGGCGATGCACTTCATTCTAAATAGGGTGGAAGTAT
CACAGAGAAGAACACAACATGTGCTAGTGTTTTCGGCGCAATTCTACGCC
TTTCGATACATGTTTGACTTATCTCAGAGGGTACAACACAGGAGAACGGG
TGAGCATAGAATTTTCATGCTCGGGAAAATATATTAGTGCATGGCGCCTC
AATAGAAGATGATGTTTGTACCGACAGAGGTGTCGGATTGAGCGGAGCGT
TCGGGTTCAATCCCCTATGGTTTTGGCATGAGGGGGTCCGGTCGATGAGA
GATTGCATATGTTTGACAAAAGTCGTGTCGCTAATGATCGCTTCTTAGGG
CGGCCTATCCTGTTGTAGGGCGGTGGTCTTGTGCAACGCGCCGCGGTGTC
GAGACAAGAACCGGTTTTTCTTGGGGTGGTGGGTGTTCGGGTTCTACACT
ATCAAACGCTCGCCAAAAAGAGAGAGAAAGGGAGCACCGAAGCCAGGTGT
TCATTGATATTTTTAGAATATTTGTTGTTAATGGGCGTTCAACATCGAGT
CATTGAAAATTTCGTCTGGTTTTCAGTGATGCGTTAGTTGTTGTTTCTGG
AACTTTCCGGGGTTTTGGACTACATTGACTAGCGGTGTCCTGTTTTCCTT
TTGATGGTACATGGCGCACTCTGGATGTATGCGTGCCCTTCACAGTTTCC
TCGGTCTAAGTAGCTTGCCCTAGATTGTTATCTCATGAAAACTGGCGTTA
TTCGAGATCTTGAGTCGTTATATTAGCACGCATTCAAATGCTCGTAGCTG
TTGGGAGTTTGCTGGGAGGGTTGATGATGTGAGTGAGGCAGACTCAGTGT
TAAATGTGTGATCGGACCTGTGACATTGTCACCCCGTGAGCCTCTTATGA
AGTGCCGCCAGCAAAGCAACACAGGGGGAATTTCCTTATCACACAGAGGG
GAAGTTGACTTGTAGAGTTTCATGATAAAGTTGATCATCATGGCCAGCAC
GCGGCCGTTAGTTGCCGTTGGTGTTGAAGAACGTGAGCGAGTGAGTGAGT
GAGCTGGAGCAGCCGCGTTCCAATTTACAGTGCTTGTCTAGCTCTTCTAT
GGGCGCCCTCCACCAGAAGGCAGCGTTGGTTCAGATTTCAAACCGAGCTG
ATTGACCACGATGAAATTCCGTGCCTCATTGGGATACGAACGGTCGACAG
TTCACTCAACCTCGTCGTTCTCTGGTTCACCCCAAGACTATTGATCTGAT
TGGCTCCCCATACACGCCTCTAGTCTCCTTTAAACAGTTCAACAAGGACA
CAAAATGTTGGAGAATGTTTCGCAACAATCCTGTCGCCGCTGACACCGCC
GGCTACTGTTCGATCTGTTAATTTCGCCTATACTTTGTGCTGTGATAAGG
GTGGTTCTTAACGCTTCGGAAAGTAGCGAATTTTCCACGGAACGGTGACA
AGAAAATCCGGCTTTTTTTCGCTTGTTATTTTCGTGATGTCATCTCAACA
AGTACGTTTCCTTCCCTGAATACACGCTTTGCTCGGCACACAGCAGGTTG
AGTTGGTGTACTCACCATTGAACAGCGGTAAAAGCGCAATGAGCAGCACC
CGACACGGAGGACAACACACTTAGAAAGACCCTATCCACCCGGCCTGCTG
TTTCCAGTTTTCAGCAACAACAGGCTCAGGGCAGAGTGTCGCAACCTGGG
TGTTGCTTGCGATTTCTTCAGTTTGCCAGCTCATTTTCCACGGTTGCGAC
TCCCATCTTTGACCACCACCTGCCCAAAGGTAGACGAGCTCAACAATCAT
AGGGCGGCCGCCGCGCTGACGGCCAGCATCATATAGATCGCCAACCCGAA
AGAATTAGCGTGTCGGAGGCCCTGCTGCTTTTCTGCTGCGTGGTGCCGTG
GATTGATGTTGACGTGTCCGACCAAAAAGAGAACATACATCTCGCCGCAT
TTTTTCCAACGGCACTTTCGTGAGGTGGCACACGTCTCTCACACACCTTA
TTGAGCAGCACCAAAGCACCCAATACCCACGAAGCAGTACGGCGCCGGGA
GATGGTATCATATATAGACAGCCGAACCGAAGGAATCAGCGCGTTGGAGG
TCTTGGTACTGCTGCTGCTGTACCCGTTCTACTACTGTTTCCGAGTTTGC
TATGTGTGATTGAAAAAAAAATCCCCGGCACCAACAGCA back to topCoding sequence (CDS) from alignment at Scaffold_189:491719..495507+ >EsuBft1017_3a-0001 ID=EsuBft1017_3a-0001|Name=EsuBft1017_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_189:491719..495507+ (Ectocarpus subulatus male Bft15b)
ATGACGAGGACGGACGACCGAATAAAGGACGCTTTCACCACGAAGTGCCC
TCACGAGGCCGACGAGGGCGAGACGTTTCTCATCAACATGCGCGAGGTCA
TCGACCGCAGCTCTCCGGGAAGCTTCAAAGAGTACGCCTTCTACAACAAG
TGGGACAACAAGGTGCCGAATCGATGGGTCGTGGCGCTGTGGAGGTCGAA
CGAGGGGCAGTACGAGCGAGCGATACAGCTGCAGTGCGTGGAGATCCTGG
GGCGGCGGGCCTTTGTCGGCATCAACTTCCTGAGCCGCGAGCCCCTGGTG
CCCCCGCGAGCGATGTCGGAGATGTTCCAGAAGGCGAAGGCGCTCGGCCT
GGCGGGGATAGGAGGGAGCCCCGCAGAGATGGAGATCGTTCGGCACGAGG
GGTGCCGATATCCCACCTCATCGGGGAACAAGGAGAGCCGCAGTTGGGGG
TCGGCGTGGGGGGTGAACACGCTGGCGTTATAG back to top
|