EsuBft1017_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1017_3a-0001
Unique Name	EsuBft1017_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_189	contig	Scaffold_189:491719..495507 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FWG8
ProteomeId	EsuBft1017_3
Protein domains	IPR012674
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	324
Hectar predicted targeting category	other localisation
Evalue	1.21e-103
EggNOG OGs	29PU5@1\|root,2RX60@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_3a	EsuBft1017_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_189 491719..495507 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_3a-0001	EsuBft1017_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_189 491719..492705 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_3a-0001-exon	agat-exon-30124	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 491719..491895 +
EsuBft1017_3a-0001-exon	EsuBft1017_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 492400..494819 +
EsuBft1017_3a-0001-exon	agat-exon-30125	Ectocarpus subulatus male Bft15b	exon	Scaffold_189 494865..495507 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_3a-0001-cds	EsuBft1017_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_189 491719..491895 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1017_3a-0001-exon	agat-three_prime_utr-183	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 492706..494819 +
EsuBft1017_3a-0001-exon	agat-three_prime_utr-184	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_189 494865..495507 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_189:491719..495507+
coding sequence from alignment at Scaffold_189:491719..495507+

spliced messenger RNA

>EsuBft1017_3a-0001 ID=EsuBft1017_3a-0001|Name=EsuBft1017_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3240bp|location=Sequence derived from alignment at Scaffold_189:491719..495507+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGGACGGACGACCGAATAAAGGACGCTTTCACCACGAAGTGCCC
TCACGAGGCCGACGAGGGCGAGACGTTTCTCATCAACATGCGCGAGGTCA
TCGACCGCAGCTCTCCGGGAAGCTTCAAAGAGTACGCCTTCTACAACAAG
TGGGACAACAAGGTGCCGAATCGATGGGTCGTGGCGCTGTGGAGGTCGAA
CGAGGGGCAGTACGAGCGAGCGATACAGCTGCAGTGCGTGGAGATCCTGG
GGCGGCGGGCCTTTGTCGGCATCAACTTCCTGAGCCGCGAGCCCCTGGTG
CCCCCGCGAGCGATGTCGGAGATGTTCCAGAAGGCGAAGGCGCTCGGCCT
GGCGGGGATAGGAGGGAGCCCCGCAGAGATGGAGATCGTTCGGCACGAGG
GGTGCCGATATCCCACCTCATCGGGGAACAAGGAGAGCCGCAGTTGGGGG
TCGGCGTGGGGGGTGAACACGCTGGCGTTATAGCGACAAGCAGCTCTGCC
CTTTTCGAGGACCCAACAGATTTGTGGTGGCAGTGGGGCAGCTCCTCTCA
GCGATGGGGAGAGGAGCAGTTACTTTGGAGCTTTGAGGTGGGTGCGATGG
CAGTGTGACCCAGAAGCGAACCGAGCAGATGAGTGTCGGTCGATGATGGA
ACGCCTCATTCACCTCGACCTCGGCCTTCTTTGGACGAAACAGCGACTCT
CTCCATGCCCTGCCGCAGGGGCGGAGGGATATTCCTCGACTGGGAGCAGC
TTCAGACGCTAACGCCACGCATATTAAGCACCCTGTTGCCCTTTTTTTTC
TAATGGTTTTTCCTTTGAATTTCCGCCGGTGCACTAGCGTCATATCTGAG
AAGCGTTAGGGATGGTCTTGCGCAAGTAGCCGTAGGCCGTTTCCGCTGAG
GGTGAATGTCTCCAGGGTGTTTGGGGCAAGATTGAAGTAACAGTGAACGG
GAGGGAGGGCGAGCCGCACGGGAACCGAGCTGTTCTCGATCATGGTATTG
CAGAGGAAAGCTGTACGGGCTTTCGCGTTCCCTAGGGTTTGGAACGATGG
CATCTAGTGTCGGCTTTGCTTGTCGGATGGTCCTGGGGGAAACCGATGAG
TGAGGCGGGCTGGCGATGCACTTCATTCTAAATAGGGTGGAAGTATCACA
GAGAAGAACACAACATGTGCTAGTGTTTTCGGCGCAATTCTACGCCTTTC
GATACATGTTTGACTTATCTCAGAGGGTACAACACAGGAGAACGGGTGAG
CATAGAATTTTCATGCTCGGGAAAATATATTAGTGCATGGCGCCTCAATA
GAAGATGATGTTTGTACCGACAGAGGTGTCGGATTGAGCGGAGCGTTCGG
GTTCAATCCCCTATGGTTTTGGCATGAGGGGGTCCGGTCGATGAGAGATT
GCATATGTTTGACAAAAGTCGTGTCGCTAATGATCGCTTCTTAGGGCGGC
CTATCCTGTTGTAGGGCGGTGGTCTTGTGCAACGCGCCGCGGTGTCGAGA
CAAGAACCGGTTTTTCTTGGGGTGGTGGGTGTTCGGGTTCTACACTATCA
AACGCTCGCCAAAAAGAGAGAGAAAGGGAGCACCGAAGCCAGGTGTTCAT
TGATATTTTTAGAATATTTGTTGTTAATGGGCGTTCAACATCGAGTCATT
GAAAATTTCGTCTGGTTTTCAGTGATGCGTTAGTTGTTGTTTCTGGAACT
TTCCGGGGTTTTGGACTACATTGACTAGCGGTGTCCTGTTTTCCTTTTGA
TGGTACATGGCGCACTCTGGATGTATGCGTGCCCTTCACAGTTTCCTCGG
TCTAAGTAGCTTGCCCTAGATTGTTATCTCATGAAAACTGGCGTTATTCG
AGATCTTGAGTCGTTATATTAGCACGCATTCAAATGCTCGTAGCTGTTGG
GAGTTTGCTGGGAGGGTTGATGATGTGAGTGAGGCAGACTCAGTGTTAAA
TGTGTGATCGGACCTGTGACATTGTCACCCCGTGAGCCTCTTATGAAGTG
CCGCCAGCAAAGCAACACAGGGGGAATTTCCTTATCACACAGAGGGGAAG
TTGACTTGTAGAGTTTCATGATAAAGTTGATCATCATGGCCAGCACGCGG
CCGTTAGTTGCCGTTGGTGTTGAAGAACGTGAGCGAGTGAGTGAGTGAGC
TGGAGCAGCCGCGTTCCAATTTACAGTGCTTGTCTAGCTCTTCTATGGGC
GCCCTCCACCAGAAGGCAGCGTTGGTTCAGATTTCAAACCGAGCTGATTG
ACCACGATGAAATTCCGTGCCTCATTGGGATACGAACGGTCGACAGTTCA
CTCAACCTCGTCGTTCTCTGGTTCACCCCAAGACTATTGATCTGATTGGC
TCCCCATACACGCCTCTAGTCTCCTTTAAACAGTTCAACAAGGACACAAA
ATGTTGGAGAATGTTTCGCAACAATCCTGTCGCCGCTGACACCGCCGGCT
ACTGTTCGATCTGTTAATTTCGCCTATACTTTGTGCTGTGATAAGGGTGG
TTCTTAACGCTTCGGAAAGTAGCGAATTTTCCACGGAACGGTGACAAGAA
AATCCGGCTTTTTTTCGCTTGTTATTTTCGTGATGTCATCTCAACAAGTT
GAGTTGGTGTACTCACCATTGAACAGCGGTAAAAGCGCAATGAGCAGCAC
CCGACACGGAGGACAACACACTTAGAAAGACCCTATCCACCCGGCCTGCT
GTTTCCAGTTTTCAGCAACAACAGGCTCAGGGCAGAGTGTCGCAACCTGG
GTGTTGCTTGCGATTTCTTCAGTTTGCCAGCTCATTTTCCACGGTTGCGA
CTCCCATCTTTGACCACCACCTGCCCAAAGGTAGACGAGCTCAACAATCA
TAGGGCGGCCGCCGCGCTGACGGCCAGCATCATATAGATCGCCAACCCGA
AAGAATTAGCGTGTCGGAGGCCCTGCTGCTTTTCTGCTGCGTGGTGCCGT
GGATTGATGTTGACGTGTCCGACCAAAAAGAGAACATACATCTCGCCGCA
TTTTTTCCAACGGCACTTTCGTGAGGTGGCACACGTCTCTCACACACCTT
ATTGAGCAGCACCAAAGCACCCAATACCCACGAAGCAGTACGGCGCCGGG
AGATGGTATCATATATAGACAGCCGAACCGAAGGAATCAGCGCGTTGGAG
GTCTTGGTACTGCTGCTGCTGTACCCGTTCTACTACTGTTTCCGAGTTTG
CTATGTGTGATTGAAAAAAAAATCCCCGGCACCAACAGCA

protein sequence of EsuBft1017_3a-0001

>EsuBft1017_3 ID=EsuBft1017_3|Name=EsuBft1017_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MTRTDDRIKDAFTTKCPHEADEGETFLINMREVIDRSSPGSFKEYAFYNK
WDNKVPNRWVVALWRSNEGQYERAIQLQCVEILGRRAFVGINFLSREPLV
PPRAMSEMFQKAKALGLAGIGGSPAEMEIVRHEGCRYPTSSGNKESRSWG
SAWGVNTLAL

mRNA from alignment at Scaffold_189:491719..495507+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1017_3a-0001 ID=EsuBft1017_3a-0001|Name=EsuBft1017_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3789bp|location=Sequence derived from alignment at Scaffold_189:491719..495507+ (Ectocarpus subulatus male Bft15b)
ATGACGAGGACGGACGACCGAATAAAGGACGCTTTCACCACGAAGTGCCC
TCACGAGGCCGACGAGGGCGAGACGTTTCTCATCAACATGCGCGAGGTCA
TCGACCGCAGCTCTCCGGGAAGCTTCAAAGAGTACGCCTTCTACAACAAG
TGGGACAACAAGGTGCCGAATCGATGGGTATTCGCGGGGTGTTTTCCTGG
TAGTAGCACCTCCTCGGGCAATCGAAGCATGTTCTTTGCGGGGTTGAATC
CGTGGAGGATGTACACGCTGCTCCTGAACGTGAAATGGCTTGCTTGTGAT
TTTTTTTCCACGTGTTGCTGTTTTTTCTATTAGAAAGACTGAAGTTCCGC
TCGCACTCGACATATTCGATTATTTTCCCATACCATAGCCCTACTAGAGT
GAGTGTTCTCTCCGAAAGAACACCGTTTGTTCGGCGTAACCATATGACAT
ACAGAGGACAGGGGGTACGGCATCAAGGCAGTTTCCGCGATTGGGTTTTC
ACTCCATCCCGTAAGGTTTTATCAACCCGCCGCTTGGGAAAATGGGCAAT
TCCCCCCATTGTGCGACATTTCCCAGATACAGTTCAATTATGCTCTTCGG
CGATTTTGGTGCTGCTGCGGTGTCTCAACGATCCCGGTCGATAGCAGAAA
ACCTCACCGGCGGGTAAACTCACATACACAGGTCGTGGCGCTGTGGAGGT
CGAACGAGGGGCAGTACGAGCGAGCGATACAGCTGCAGTGCGTGGAGATC
CTGGGGCGGCGGGCCTTTGTCGGCATCAACTTCCTGAGCCGCGAGCCCCT
GGTGCCCCCGCGAGCGATGTCGGAGATGTTCCAGAAGGCGAAGGCGCTCG
GCCTGGCGGGGATAGGAGGGAGCCCCGCAGAGATGGAGATCGTTCGGCAC
GAGGGGTGCCGATATCCCACCTCATCGGGGAACAAGGAGAGCCGCAGTTG
GGGGTCGGCGTGGGGGGTGAACACGCTGGCGTTATAGCGACAAGCAGCTC
TGCCCTTTTCGAGGACCCAACAGATTTGTGGTGGCAGTGGGGCAGCTCCT
CTCAGCGATGGGGAGAGGAGCAGTTACTTTGGAGCTTTGAGGTGGGTGCG
ATGGCAGTGTGACCCAGAAGCGAACCGAGCAGATGAGTGTCGGTCGATGA
TGGAACGCCTCATTCACCTCGACCTCGGCCTTCTTTGGACGAAACAGCGA
CTCTCTCCATGCCCTGCCGCAGGGGCGGAGGGATATTCCTCGACTGGGAG
CAGCTTCAGACGCTAACGCCACGCATATTAAGCACCCTGTTGCCCTTTTT
TTTCTAATGGTTTTTCCTTTGAATTTCCGCCGGTGCACTAGCGTCATATC
TGAGAAGCGTTAGGGATGGTCTTGCGCAAGTAGCCGTAGGCCGTTTCCGC
TGAGGGTGAATGTCTCCAGGGTGTTTGGGGCAAGATTGAAGTAACAGTGA
ACGGGAGGGAGGGCGAGCCGCACGGGAACCGAGCTGTTCTCGATCATGGT
ATTGCAGAGGAAAGCTGTACGGGCTTTCGCGTTCCCTAGGGTTTGGAACG
ATGGCATCTAGTGTCGGCTTTGCTTGTCGGATGGTCCTGGGGGAAACCGA
TGAGTGAGGCGGGCTGGCGATGCACTTCATTCTAAATAGGGTGGAAGTAT
CACAGAGAAGAACACAACATGTGCTAGTGTTTTCGGCGCAATTCTACGCC
TTTCGATACATGTTTGACTTATCTCAGAGGGTACAACACAGGAGAACGGG
TGAGCATAGAATTTTCATGCTCGGGAAAATATATTAGTGCATGGCGCCTC
AATAGAAGATGATGTTTGTACCGACAGAGGTGTCGGATTGAGCGGAGCGT
TCGGGTTCAATCCCCTATGGTTTTGGCATGAGGGGGTCCGGTCGATGAGA
GATTGCATATGTTTGACAAAAGTCGTGTCGCTAATGATCGCTTCTTAGGG
CGGCCTATCCTGTTGTAGGGCGGTGGTCTTGTGCAACGCGCCGCGGTGTC
GAGACAAGAACCGGTTTTTCTTGGGGTGGTGGGTGTTCGGGTTCTACACT
ATCAAACGCTCGCCAAAAAGAGAGAGAAAGGGAGCACCGAAGCCAGGTGT
TCATTGATATTTTTAGAATATTTGTTGTTAATGGGCGTTCAACATCGAGT
CATTGAAAATTTCGTCTGGTTTTCAGTGATGCGTTAGTTGTTGTTTCTGG
AACTTTCCGGGGTTTTGGACTACATTGACTAGCGGTGTCCTGTTTTCCTT
TTGATGGTACATGGCGCACTCTGGATGTATGCGTGCCCTTCACAGTTTCC
TCGGTCTAAGTAGCTTGCCCTAGATTGTTATCTCATGAAAACTGGCGTTA
TTCGAGATCTTGAGTCGTTATATTAGCACGCATTCAAATGCTCGTAGCTG
TTGGGAGTTTGCTGGGAGGGTTGATGATGTGAGTGAGGCAGACTCAGTGT
TAAATGTGTGATCGGACCTGTGACATTGTCACCCCGTGAGCCTCTTATGA
AGTGCCGCCAGCAAAGCAACACAGGGGGAATTTCCTTATCACACAGAGGG
GAAGTTGACTTGTAGAGTTTCATGATAAAGTTGATCATCATGGCCAGCAC
GCGGCCGTTAGTTGCCGTTGGTGTTGAAGAACGTGAGCGAGTGAGTGAGT
GAGCTGGAGCAGCCGCGTTCCAATTTACAGTGCTTGTCTAGCTCTTCTAT
GGGCGCCCTCCACCAGAAGGCAGCGTTGGTTCAGATTTCAAACCGAGCTG
ATTGACCACGATGAAATTCCGTGCCTCATTGGGATACGAACGGTCGACAG
TTCACTCAACCTCGTCGTTCTCTGGTTCACCCCAAGACTATTGATCTGAT
TGGCTCCCCATACACGCCTCTAGTCTCCTTTAAACAGTTCAACAAGGACA
CAAAATGTTGGAGAATGTTTCGCAACAATCCTGTCGCCGCTGACACCGCC
GGCTACTGTTCGATCTGTTAATTTCGCCTATACTTTGTGCTGTGATAAGG
GTGGTTCTTAACGCTTCGGAAAGTAGCGAATTTTCCACGGAACGGTGACA
AGAAAATCCGGCTTTTTTTCGCTTGTTATTTTCGTGATGTCATCTCAACA
AGTACGTTTCCTTCCCTGAATACACGCTTTGCTCGGCACACAGCAGGTTG
AGTTGGTGTACTCACCATTGAACAGCGGTAAAAGCGCAATGAGCAGCACC
CGACACGGAGGACAACACACTTAGAAAGACCCTATCCACCCGGCCTGCTG
TTTCCAGTTTTCAGCAACAACAGGCTCAGGGCAGAGTGTCGCAACCTGGG
TGTTGCTTGCGATTTCTTCAGTTTGCCAGCTCATTTTCCACGGTTGCGAC
TCCCATCTTTGACCACCACCTGCCCAAAGGTAGACGAGCTCAACAATCAT
AGGGCGGCCGCCGCGCTGACGGCCAGCATCATATAGATCGCCAACCCGAA
AGAATTAGCGTGTCGGAGGCCCTGCTGCTTTTCTGCTGCGTGGTGCCGTG
GATTGATGTTGACGTGTCCGACCAAAAAGAGAACATACATCTCGCCGCAT
TTTTTCCAACGGCACTTTCGTGAGGTGGCACACGTCTCTCACACACCTTA
TTGAGCAGCACCAAAGCACCCAATACCCACGAAGCAGTACGGCGCCGGGA
GATGGTATCATATATAGACAGCCGAACCGAAGGAATCAGCGCGTTGGAGG
TCTTGGTACTGCTGCTGCTGTACCCGTTCTACTACTGTTTCCGAGTTTGC
TATGTGTGATTGAAAAAAAAATCCCCGGCACCAACAGCA

Coding sequence (CDS) from alignment at Scaffold_189:491719..495507+

>EsuBft1017_3a-0001 ID=EsuBft1017_3a-0001|Name=EsuBft1017_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_189:491719..495507+ (Ectocarpus subulatus male Bft15b)
ATGACGAGGACGGACGACCGAATAAAGGACGCTTTCACCACGAAGTGCCC
TCACGAGGCCGACGAGGGCGAGACGTTTCTCATCAACATGCGCGAGGTCA
TCGACCGCAGCTCTCCGGGAAGCTTCAAAGAGTACGCCTTCTACAACAAG
TGGGACAACAAGGTGCCGAATCGATGGGTCGTGGCGCTGTGGAGGTCGAA
CGAGGGGCAGTACGAGCGAGCGATACAGCTGCAGTGCGTGGAGATCCTGG
GGCGGCGGGCCTTTGTCGGCATCAACTTCCTGAGCCGCGAGCCCCTGGTG
CCCCCGCGAGCGATGTCGGAGATGTTCCAGAAGGCGAAGGCGCTCGGCCT
GGCGGGGATAGGAGGGAGCCCCGCAGAGATGGAGATCGTTCGGCACGAGG
GGTGCCGATATCCCACCTCATCGGGGAACAAGGAGAGCCGCAGTTGGGGG
TCGGCGTGGGGGGTGAACACGCTGGCGTTATAG