EsuBft1017_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1017_2a-0001
Unique NameEsuBft1017_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:487597..489216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1017_2
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length144
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_2aEsuBft1017_2aEctocarpus subulatus male Bft15bgeneScaffold_189 487597..489216 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_2a-0001-exonagat-exon-30123Ectocarpus subulatus male Bft15bexonScaffold_189 487597..488443 -
EsuBft1017_2a-0001-exonEsuBft1017_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 488615..489216 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_2a-0001-exonagat-three_prime_utr-181Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 487597..488443 -
EsuBft1017_2a-0001-exonagat-three_prime_utr-182Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 488615..488859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_2a-0001-cdsEsuBft1017_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 488860..489216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_2a-0001EsuBft1017_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 488860..489216 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1017_2a-0001 ID=EsuBft1017_2a-0001|Name=EsuBft1017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1449bp|location=Sequence derived from alignment at Scaffold_189:487597..489216- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGGCCACGCCCACCCCGATGCCCACGGCATGGTCCCGTAGGAA
TCTTCCGCGACTTCCGCTATGGTCGCCGCTCATGCTGATCGGGGTGCTGC
AGCTTGTGGTGTTATCGCTCGTTGCCCACTCTGCCTGTTGCTGCAGCCCC
CCCGCGCCCCTGCTCCTGCGCCAGCTATTTCTCGTGGTCGACTCCGCACC
GCTCCTGCCCATCAGGTCGGCTGGCTGGAGCGCACTCTCAGGGTTGAGCC
GGACAGCGTTGGCCAAGACAGATCCCAACATCAACCAGAGCATCGCTCCG
CCGCACACATGCACCACGTTCCTGCCCCAGTTCCTGCTGCTTCTGCAGCC
AGGCTGACGACTGAACAAAGCGGCAGCCATCACTTCGCGCCAGAGACAAT
TAACAACTGAATTTTCTTGCTGTCGGCGAAAGCGTGAGCTGCCCATGGAC
ACCGTTACCCCTTGCTAGCTGCTCTGGAAGAGAGCTCTATTGCTCCTCCA
CCGGCTTGAGAGAGATTCCCATTTTGCGAAACACTCAGCTCGTTGTTTGA
TTGGACGATTCCAACAGGGTCGCCCTGCCACCGGCGGTGCCACAGCGACC
AGGGCACAGGAACTGGGCGTGCAGACAAGGCAGGCACGGGAGTAGGGCGC
TGCCGGTGCGTATTGTAGGTTGTAGACAACCTATTCTACAGCAGTAGTGC
ACATCCATGTGTCGTATGATTTCCACCCCCTTCGCCGCGTCAACGGTCCT
TCCACGACTCCTCTCAATAGCATGGTTTGTTCGTTTGTTACCGAGGATGC
TGACGGGGGCAGCCAAGTTTGTTGGCTCACCTCCCATACACCTGTAGAAT
ACCATACGTTTTTCCTCGTTTTTTTTCAGGGTACACCTCGGGAATATTCC
CGCCGTTTTTTTCCCGCCGTGGTGGGCGGTCCCGGTACTGGCGGGAATTA
CCGCCACATTCGGGTGGTACCGGGAATAACAAGTGGGTTGTCGTTTTTCC
ATATCTTTTTTTGGGCTGTCCCTTTTTGAGAAAAGGGACAGCCCAAAAAG
AGACAGCGTAACAACACTTTTAGGGCCGTTTTAAACGGACCGACTTTTTT
GTCAAAATTTTCAGGGTACACCTCGGTACTAGTTTTTTAGGCGGATCCAG
GCGGGGCGGTACTGCAAAGTGGCGGTATTTTTTTGGCGGTTGGCGGTATT
TCGTTTTCCGGCGGTACCGCCTTTGGCGGTTCCCGGTACCACCCGAATGT
GGCGGTACTTTTTTGGCGGTACTGCAAAGTGGCGGTACTTTTTTGGCGGT
TCCCGGTACTTCGTTTTTTCGGCGGTATTTTTCTGGCGGTACTGAAATAT
GGCGGTACCGTCTCCGGCGGTTCCCGGTACTGCCAAATATGGCGGTTTTT
TGGTGGCGGTACTGAAGTATGGCGGCACCGCCTTCGAGGGTTGCGAGTA
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protein sequence of EsuBft1017_2a-0001

>EsuBft1017_2 ID=EsuBft1017_2|Name=EsuBft1017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=118bp
MAAATPTPMPTAWSRRNLPRLPLWSPLMLIGVLQLVVLSLVAHSACCCSP
PAPLLLRQLFLVVDSAPLLPIRSAGWSALSGLSRTALAKTDPNINQSIAP
PHTCTTFLPQFLLLLQPG
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mRNA from alignment at Scaffold_189:487597..489216-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1017_2a-0001 ID=EsuBft1017_2a-0001|Name=EsuBft1017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1620bp|location=Sequence derived from alignment at Scaffold_189:487597..489216- (Ectocarpus subulatus male Bft15b)
ATGGCCGCGGCCACGCCCACCCCGATGCCCACGGCATGGTCCCGTAGGAA
TCTTCCGCGACTTCCGCTATGGTCGCCGCTCATGCTGATCGGGGTGCTGC
AGCTTGTGGTGTTATCGCTCGTTGCCCACTCTGCCTGTTGCTGCAGCCCC
CCCGCGCCCCTGCTCCTGCGCCAGCTATTTCTCGTGGTCGACTCCGCACC
GCTCCTGCCCATCAGGTCGGCTGGCTGGAGCGCACTCTCAGGGTTGAGCC
GGACAGCGTTGGCCAAGACAGATCCCAACATCAACCAGAGCATCGCTCCG
CCGCACACATGCACCACGTTCCTGCCCCAGTTCCTGCTGCTTCTGCAGCC
AGGCTGACGACTGAACAAAGCGGCAGCCATCACTTCGCGCCAGAGACAAT
TAACAACTGAATTTTCTTGCTGTCGGCGAAAGCGTGAGCTGCCCATGGAC
ACCGTTACCCCTTGCTAGCTGCTCTGGAAGAGAGCTCTATTGCTCCTCCA
CCGGCTTGAGAGAGATTCCCATTTTGCGAAACACTCAGCTCGTTGTTTGA
TTGGACGATTCCAACAGGGTCGCCCTGCCACCGGCGGTGCCACAGCGACC
AGGTAGGTCACCAGGTTGAGTTCCCCAGATTCCACATCACTTCCGCCGAC
GAGTTCGCGAGGACCAAGAGGGGGAAGGGGGAGTGTCACACTTATTGGTG
AAGGTTGTCCGATGGCTACTGAAGGTGAGATGTATTGGGCAGTACCTGTT
GAAGTGGGAAGATCAGAGTGCAGGGCACAGGAACTGGGCGTGCAGACAAG
GCAGGCACGGGAGTAGGGCGCTGCCGGTGCGTATTGTAGGTTGTAGACAA
CCTATTCTACAGCAGTAGTGCACATCCATGTGTCGTATGATTTCCACCCC
CTTCGCCGCGTCAACGGTCCTTCCACGACTCCTCTCAATAGCATGGTTTG
TTCGTTTGTTACCGAGGATGCTGACGGGGGCAGCCAAGTTTGTTGGCTCA
CCTCCCATACACCTGTAGAATACCATACGTTTTTCCTCGTTTTTTTTCAG
GGTACACCTCGGGAATATTCCCGCCGTTTTTTTCCCGCCGTGGTGGGCGG
TCCCGGTACTGGCGGGAATTACCGCCACATTCGGGTGGTACCGGGAATAA
CAAGTGGGTTGTCGTTTTTCCATATCTTTTTTTGGGCTGTCCCTTTTTGA
GAAAAGGGACAGCCCAAAAAGAGACAGCGTAACAACACTTTTAGGGCCGT
TTTAAACGGACCGACTTTTTTGTCAAAATTTTCAGGGTACACCTCGGTAC
TAGTTTTTTAGGCGGATCCAGGCGGGGCGGTACTGCAAAGTGGCGGTATT
TTTTTGGCGGTTGGCGGTATTTCGTTTTCCGGCGGTACCGCCTTTGGCGG
TTCCCGGTACCACCCGAATGTGGCGGTACTTTTTTGGCGGTACTGCAAAG
TGGCGGTACTTTTTTGGCGGTTCCCGGTACTTCGTTTTTTCGGCGGTATT
TTTCTGGCGGTACTGAAATATGGCGGTACCGTCTCCGGCGGTTCCCGGTA
CTGCCAAATATGGCGGTTTTTTGGTGGCGGTACTGAAGTATGGCGGCACC
GCCTTCGAGGGTTGCGAGTA
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Coding sequence (CDS) from alignment at Scaffold_189:487597..489216-

>EsuBft1017_2a-0001 ID=EsuBft1017_2a-0001|Name=EsuBft1017_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=357bp|location=Sequence derived from alignment at Scaffold_189:487597..489216- (Ectocarpus subulatus male Bft15b)
ATGGCCGCGGCCACGCCCACCCCGATGCCCACGGCATGGTCCCGTAGGAA
TCTTCCGCGACTTCCGCTATGGTCGCCGCTCATGCTGATCGGGGTGCTGC
AGCTTGTGGTGTTATCGCTCGTTGCCCACTCTGCCTGTTGCTGCAGCCCC
CCCGCGCCCCTGCTCCTGCGCCAGCTATTTCTCGTGGTCGACTCCGCACC
GCTCCTGCCCATCAGGTCGGCTGGCTGGAGCGCACTCTCAGGGTTGAGCC
GGACAGCGTTGGCCAAGACAGATCCCAACATCAACCAGAGCATCGCTCCG
CCGCACACATGCACCACGTTCCTGCCCCAGTTCCTGCTGCTTCTGCAGCC
AGGCTGA
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