EsuBft1016_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1016_8a-0001
Unique Name	EsuBft1016_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_389	contig	Scaffold_389:593915..596643 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1016_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	236
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_8a	EsuBft1016_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_389 593915..596643 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_8a-0001-exon	agat-exon-21261	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 593915..594063 +
EsuBft1016_8a-0001-exon	EsuBft1016_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_389 594430..596643 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_8a-0001-cds	EsuBft1016_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_389 593915..594063 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_8a-0001-exon	agat-three_prime_utr-172	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_389 594611..596643 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1016_8a-0001	EsuBft1016_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_389 593915..594610 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_389:593915..596643+
coding sequence from alignment at Scaffold_389:593915..596643+

spliced messenger RNA

>EsuBft1016_8a-0001 ID=EsuBft1016_8a-0001|Name=EsuBft1016_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2363bp|location=Sequence derived from alignment at Scaffold_389:593915..596643+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTCTGCGACGCGGAGCACATTCAGCTTAAGGAGGCCGGGGACCT
TGAGTCCCGGCAGTGCTACGCCGAGCGCCAGGTGCAGGCGTTCTCTCACC
GCCAGAATGGCGGTTTCAAGACGAAGAAGGCGCGGGAGTTTCAGAACTCG
CTTTTTTCCTTCGCCACCGGAACGTTCCGCTTCGCGGAACCCATTCTCAA
CGTGCGCAACGAGGAGTTCACCAACAAACGCATCATCGCGTACATCGCGC
CGTTCGCAGGCAAGCGTTTCCCAACCGGCCGTATTTTGTTTGTCATATCC
TCAATAGGGCTCAGTCGGCGTTCAGACTAGATCGATACAAAATGTAGGGT
AGGGACTCCCCCGGTCCGTCAAATTCAAAGCCCTGTCCTCAAAGAGACCG
CCATCCTCGCATTANCCCGACGATGTTATCGTCGGGGCGAGCGACCTGGA
GGAATACCTCAAGAACATGTCGCCCTAAGTTCAGGGCGACATGTTGTTGA
GGTACGGGTTAACCGCCGCCGAAGTTCTGGGCGACATGTTGTTGAGGTAT
TCCTCCAGGTCGCTCGCCTCGACGATAACATCGTCGGGGCGGTCGAAGGG
CGCCGGCAGCTATTGTCGCCACACAAGTATGCCTGACAAGTTTTGGAGTG
GGTTTCGAAGGGGGGAGACTCTTACCTCGACGTTGCTGCTGGTATTACTT
TGCGCGGAGTTCATGTGTTGGCTCTTACAAAGCGTCACTGCTGGGTTGTC
TCATGTCCCCCAGGGGGTTGATGCAGTTAAGATATGCGCGCCCTGTCGCG
CGGGATGGCATCATCCTGGACACCCGACCTCACCTCTGCGCTCTTTTTGT
ATGATAATTTTGGATGCGTCGGAGCTACATTTCTTTCATTCACCGGCGGC
GTATCACGTCCCGCAATGGAGATCTGCGCGACGTTCGTGGTGATGGTGAA
TGATGCATATTGGTCAGGATATAGGCTGTTGCGCTGTCGCCTGGTTGGTC
AACACGGCAGCGTTTGTTTTATGTGTGATCTATTTGTGCATTTTAGTGAA
GTAGGCGGTTGGTGGCGGGGTCTTTTTCGCGTCTGTCTGTGACCGACGGC
GGGAGCCTTCGTCGGCTTCGGGGGGGGGGGCTTGTTCTTGATACCTAGGT
GAATCTCTGGGGTACATGTCTGCAGTAGTCTTGTTAGATGACATCAGTTT
GTACCTTGGTGATCATGATGATGTGATGATACCATTGGTGGAGTAAAATA
TGCTTTTGGGTTGGCCCTTGGCGCGTCCCACACACAGCGTTTGCTGTCTT
TGTCTTTTATGTTTTTGCTTCTCTCCGATGGGGGTCGTTGAATGCGTCGT
CAAAAGTCCACGTGGTTTCTTATGGCGTCACGTCCCGGAGTGAGTGTCGG
ATTATACTTTTTGCTTTTCCTGTATATCTTTGATGCATGTGTCGCGTAGG
TCGGAGAGAGTAGTGATGTGCGCGTCATACATGTACGAAACGCAGAGGGC
ATTGTATCACGAGATAATCTTCGGGTTTTGCTAACGACGAGCTATATGAT
GCTGTTGCTCAGGATGTCGGCTCTTGCGTAGTCGCTTGGTGGGTCAGTAC
GGCAGTGTTTGGGTTGTGTTTTTTTCTTTCTGTGGGATCTGCTGCATTTT
AGTGAAGTAGGCGGTTGGTGACGGGGTCTTTTTTCGCGTCTGCCTGTGAC
TGACGGCGGGAGCCTTCGCCGGCTTCGGGGGGGGCTTGTTCTTCTAACCT
AGGTGAATCTCTGGGGCGGGTACAAGTCTGCAGTAGTCTTGTTAGAGTAC
ATCAGTTTGTACCTTGGTGATCATGATGATGTGATGATACCATTGGTGGA
GTAAAATATGCTGTTGGGGTGGCGCTTGGCGCATCCCACACACAGCGTTT
GCGGTTTTTGCCTTTTATGTTTTTGCTTCTCTCCAATGGGGGTCGTTGAA
TGCGTCCACAGTCCACGTCGTTTCTTATGGCGTCACGTCCCGGAGTGAGT
GTCGGATTATGCTTTTTGCTTTTCCTGTATACCTTTGATGCATGTCTCGC
GTAGCTCTCGAATAGAGTAGTGTTGTGCGCGTCATACATATACGAAACGG
AGAGGGCATTGTATCACTAGGTGCTCTTCGCTGTTTTGTGTACGGAGGGT
CGAGATGCGTTGAATGAGGGAGAATCTTCGGACAGATGGATCGGTGTGTT
ATGGATTTGATACTAGCGCCGACTGTTCCTGTCGGTTTATACTCTGGCGT
GTACTTTGTCATCCTTCGTGTTTCCTGTTTGCGTATCAAGCATGTAGCCG
GTGCTGCGGGAGTCACTGTAACCGTAGGAAACAGAGAAAACGAAACCGTT
TCGAAAAACCACC

protein sequence of EsuBft1016_8a-0001

>EsuBft1016_8 ID=EsuBft1016_8|Name=EsuBft1016_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MMLCDAEHIQLKEAGDLESRQCYAERQVQAFSHRQNGGFKTKKAREFQNS
LFSFATGTFRFAEPILNVRNEEFTNKRIIAYIAPFAGKRFPTGRILFVIS
SIGLSRRSD

mRNA from alignment at Scaffold_389:593915..596643+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1016_8a-0001 ID=EsuBft1016_8a-0001|Name=EsuBft1016_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2729bp|location=Sequence derived from alignment at Scaffold_389:593915..596643+ (Ectocarpus subulatus male Bft15b)
ATGATGCTCTGCGACGCGGAGCACATTCAGCTTAAGGAGGCCGGGGACCT
TGAGTCCCGGCAGTGCTACGCCGAGCGCCAGGTGCAGGCGTTCTCTCACC
GCCAGAATGGCGGTTTCAAGACGAAGAAGGCGCGGGAGTTTCAGAACTCG
TGAGTGTTGATCGGTAATGATTCTTGCGAGTCAACGAAGAGAGACGGGTC
TGCCTTTTGGAACGTTGCGTCGTTCCCACGACGTTAGGGCAGTCAGATAT
TGTTGCACACCATATCTTGCACCTGTAGAGTGCCGGTGGGGTGCCTTGTT
TCACGTGTATTCCGGTGGGCGCATGCTAATAAGGCACACAGATCATTGGT
GTCGTTGCTACCACGTTTTTTTGTACTGTGTTGCGTGCGCGTCAGTACAC
CCCAATAAATTTGCGAAATCTTCGTCAAACCACCACGCCATGACACTCTG
CGAATGAATTTTTTCATATCTTTCGTTTTGTGTTCTTGCTGTCCGTCGCA
TAGCCTGTGGTACAGGCTTTTTTCCTTCGCCACCGGAACGTTCCGCTTCG
CGGAACCCATTCTCAACGTGCGCAACGAGGAGTTCACCAACAAACGCATC
ATCGCGTACATCGCGCCGTTCGCAGGCAAGCGTTTCCCAACCGGCCGTAT
TTTGTTTGTCATATCCTCAATAGGGCTCAGTCGGCGTTCAGACTAGATCG
ATACAAAATGTAGGGTAGGGACTCCCCCGGTCCGTCAAATTCAAAGCCCT
GTCCTCAAAGAGACCGCCATCCTCGCATTANCCCGACGATGTTATCGTCG
GGGCGAGCGACCTGGAGGAATACCTCAAGAACATGTCGCCCTAAGTTCAG
GGCGACATGTTGTTGAGGTACGGGTTAACCGCCGCCGAAGTTCTGGGCGA
CATGTTGTTGAGGTATTCCTCCAGGTCGCTCGCCTCGACGATAACATCGT
CGGGGCGGTCGAAGGGCGCCGGCAGCTATTGTCGCCACACAAGTATGCCT
GACAAGTTTTGGAGTGGGTTTCGAAGGGGGGAGACTCTTACCTCGACGTT
GCTGCTGGTATTACTTTGCGCGGAGTTCATGTGTTGGCTCTTACAAAGCG
TCACTGCTGGGTTGTCTCATGTCCCCCAGGGGGTTGATGCAGTTAAGATA
TGCGCGCCCTGTCGCGCGGGATGGCATCATCCTGGACACCCGACCTCACC
TCTGCGCTCTTTTTGTATGATAATTTTGGATGCGTCGGAGCTACATTTCT
TTCATTCACCGGCGGCGTATCACGTCCCGCAATGGAGATCTGCGCGACGT
TCGTGGTGATGGTGAATGATGCATATTGGTCAGGATATAGGCTGTTGCGC
TGTCGCCTGGTTGGTCAACACGGCAGCGTTTGTTTTATGTGTGATCTATT
TGTGCATTTTAGTGAAGTAGGCGGTTGGTGGCGGGGTCTTTTTCGCGTCT
GTCTGTGACCGACGGCGGGAGCCTTCGTCGGCTTCGGGGGGGGGGGCTTG
TTCTTGATACCTAGGTGAATCTCTGGGGTACATGTCTGCAGTAGTCTTGT
TAGATGACATCAGTTTGTACCTTGGTGATCATGATGATGTGATGATACCA
TTGGTGGAGTAAAATATGCTTTTGGGTTGGCCCTTGGCGCGTCCCACACA
CAGCGTTTGCTGTCTTTGTCTTTTATGTTTTTGCTTCTCTCCGATGGGGG
TCGTTGAATGCGTCGTCAAAAGTCCACGTGGTTTCTTATGGCGTCACGTC
CCGGAGTGAGTGTCGGATTATACTTTTTGCTTTTCCTGTATATCTTTGAT
GCATGTGTCGCGTAGGTCGGAGAGAGTAGTGATGTGCGCGTCATACATGT
ACGAAACGCAGAGGGCATTGTATCACGAGATAATCTTCGGGTTTTGCTAA
CGACGAGCTATATGATGCTGTTGCTCAGGATGTCGGCTCTTGCGTAGTCG
CTTGGTGGGTCAGTACGGCAGTGTTTGGGTTGTGTTTTTTTCTTTCTGTG
GGATCTGCTGCATTTTAGTGAAGTAGGCGGTTGGTGACGGGGTCTTTTTT
CGCGTCTGCCTGTGACTGACGGCGGGAGCCTTCGCCGGCTTCGGGGGGGG
CTTGTTCTTCTAACCTAGGTGAATCTCTGGGGCGGGTACAAGTCTGCAGT
AGTCTTGTTAGAGTACATCAGTTTGTACCTTGGTGATCATGATGATGTGA
TGATACCATTGGTGGAGTAAAATATGCTGTTGGGGTGGCGCTTGGCGCAT
CCCACACACAGCGTTTGCGGTTTTTGCCTTTTATGTTTTTGCTTCTCTCC
AATGGGGGTCGTTGAATGCGTCCACAGTCCACGTCGTTTCTTATGGCGTC
ACGTCCCGGAGTGAGTGTCGGATTATGCTTTTTGCTTTTCCTGTATACCT
TTGATGCATGTCTCGCGTAGCTCTCGAATAGAGTAGTGTTGTGCGCGTCA
TACATATACGAAACGGAGAGGGCATTGTATCACTAGGTGCTCTTCGCTGT
TTTGTGTACGGAGGGTCGAGATGCGTTGAATGAGGGAGAATCTTCGGACA
GATGGATCGGTGTGTTATGGATTTGATACTAGCGCCGACTGTTCCTGTCG
GTTTATACTCTGGCGTGTACTTTGTCATCCTTCGTGTTTCCTGTTTGCGT
ATCAAGCATGTAGCCGGTGCTGCGGGAGTCACTGTAACCGTAGGAAACAG
AGAAAACGAAACCGTTTCGAAAAACCACC

Coding sequence (CDS) from alignment at Scaffold_389:593915..596643+

>EsuBft1016_8a-0001 ID=EsuBft1016_8a-0001|Name=EsuBft1016_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_389:593915..596643+ (Ectocarpus subulatus male Bft15b)
ATGATGCTCTGCGACGCGGAGCACATTCAGCTTAAGGAGGCCGGGGACCT
TGAGTCCCGGCAGTGCTACGCCGAGCGCCAGGTGCAGGCGTTCTCTCACC
GCCAGAATGGCGGTTTCAAGACGAAGAAGGCGCGGGAGTTTCAGAACTCG
CTTTTTTCCTTCGCCACCGGAACGTTCCGCTTCGCGGAACCCATTCTCAA
CGTGCGCAACGAGGAGTTCACCAACAAACGCATCATCGCGTACATCGCGC
CGTTCGCAGGCAAGCGTTTCCCAACCGGCCGTATTTTGTTTGTCATATCC
TCAATAGGGCTCAGTCGGCGTTCAGACTAG