EsuBft1016_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1016_7a-0001
Unique NameEsuBft1016_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:612266..614182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1016_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length148
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_7aEsuBft1016_7aEctocarpus subulatus male Bft15bgeneScaffold_389 612266..614182 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_7a-0001-exonagat-exon-21260Ectocarpus subulatus male Bft15bexonScaffold_389 612266..612441 +
EsuBft1016_7a-0001-exonEsuBft1016_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 612879..614182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_7a-0001-cdsEsuBft1016_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 612266..612441 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_7a-0001-exonagat-three_prime_utr-171Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 613072..614182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_7a-0001EsuBft1016_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 612266..613071 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1016_7a-0001 ID=EsuBft1016_7a-0001|Name=EsuBft1016_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1480bp|location=Sequence derived from alignment at Scaffold_389:612266..614182+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAGCCAGCGAACTCCTCGACGCGACGCCGTTTTCCACATCAAGGA
TGGCGGTATGGTGGAAAAGCAGAGGCTGCCTTTGGCAATGGCAACGTCGA
TGTCTGCCAGGACGACGGCGCAGCCTGGCGGGGGCGGCGAAAGTACGAAG
GAAAAAGCTTTCTGCACCACTCTCAGATCCCATTGGGTGACAAGCACTCA
GTCGATGGCTCCGGCATTCTCTCCTCCCGAGACCAACGAGCCAACAGGCA
CCTGGTACGAGCAAGCCGACAGGGTATTTCGGTTCTTCGGGTTCATCGTC
GACCAAGTGGATCCAACGAGCCGACAGGTGTACTGCTGTACTCTCCTACG
AACGTCCGAAATACATTAACCGGAGCACGGAATATTGCTACTTTGCATCT
CACGTCCCTGGATCACCATTCATTGCTTGATTTAGATCTTTAGATCAACG
TCGGAGGAGGGAACTCACTGGCTCTGTACGTCTACCAGTGATTCCTCCGA
CATGAATTGAGAACGGCAGCAAGACGATAGTGCTACAGAAGTAGCAGAGT
ATCAAGCGGCCAGTGTTTGGCGAGCCTGAATTAAACAGAAGGCCTCCGCA
ACAGTAATATCGAACAGCAGTACGCCTACCTGTGCCTGATGTGTTGTGGC
ACCTTAAGGGTACCCGGACAACCTCCTGCTATGTTGCCTAATTTCGAAAA
CAAACGCAAGAGCGCCAGAAAATGCACTAGAGACACATATGACCAGTCGG
AAGGCATCGCAAAAAAAACAAGTCCAAAATTCTGGCACAGGGCAGCAGTA
GAGACCGCTCAAAACGTGCTTTTCGCGCGTCTACCTCCACACGCATCCTT
TGAAACCAAGATAAAAATCCACACCAGTCTAAATTCAAGTCAAAAGAGCC
CAAACGGAAGGCGCTCAAATAAGGCCGGTGTTGCTAGGAACCTGGTCCAT
TGTACCAATATCACTAGAGGACACCCTATAGCAGCGGGGGGGTGTGTTGG
CGCGCTCAAAACTTCTTCTGTGGTGGTGGTATCGAGTGTCGTTGTAGTGG
CCCACAATCTCCGCAAATCTCCGCAAGTTAGATCGACACCCAGTGTCTTG
TACTGCTTGTGCTCGCCGCCACTGAACCCAATCTTCTGAACTGCAGGTTT
ACAGCAGTAGCTGATGCCACCAGCTACTGCTGACAACCCGCAGTTGAGGG
GTTGGCGGTCCGTGGTGGTGAGCACCGCTGTGACAAGTGTTGGGTTCCGC
TTGGTTCCGGCGCAGATTTCGGACCGTTTTCAGAGGCTGCTGCGACCTTC
GATATTTCAGCCCCAGTAGTATACCTGAACGTGCCAGCACGCACGACGCC
TCTTGATGATATCCTCTACTGATACTAGCACAACGGACCAGGTTCCTCCG
GCGGGAAGGTTGTTTTCTTTCTTTGTACTGTTATAAAGTATGAGAAAAGA
GCCAGCGTCAAAATCCCTTGTCTGGGTACC
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protein sequence of EsuBft1016_7a-0001

>EsuBft1016_7 ID=EsuBft1016_7|Name=EsuBft1016_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=122bp
MHSQRTPRRDAVFHIKDGGMVEKQRLPLAMATSMSARTTAQPGGGGESTK
EKAFCTTLRSHWVTSTQSMAPAFSPPETNEPTGTWYEQADRVFRFFGFIV
DQVDPTSRQVYCCTLLRTSEIH
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mRNA from alignment at Scaffold_389:612266..614182+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1016_7a-0001 ID=EsuBft1016_7a-0001|Name=EsuBft1016_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1917bp|location=Sequence derived from alignment at Scaffold_389:612266..614182+ (Ectocarpus subulatus male Bft15b)
ATGCACAGCCAGCGAACTCCTCGACGCGACGCCGTTTTCCACATCAAGGA
TGGCGGTATGGTGGAAAAGCAGAGGCTGCCTTTGGCAATGGCAACGTCGA
TGTCTGCCAGGACGACGGCGCAGCCTGGCGGGGGCGGCGAAAGTACGAAG
GAAAAAGCTTTCTGCACCACTCTCAGGTATCATGTGCCGCTCTACGCTAG
AACTACTCACACGTTCGTGGTATGAACAGCGACAGACAACGGGCCGTGGG
TCAAAGCCTGTGTTCATCGATCGAAGTCTCGTGTGCATGTCGTCTCGACA
GAGCATCTCGCAGAGCTCTCTGCTGGCTGTTTCTACACAAGTATAGTCAA
AGGATGCGGATGATACGCACCTTGCCCGCCGTACGCAGCAGTTTAGACTA
TGATCATCACCAGGCATGTTTAGTTGCCCTCTTATCTCGGTTCGCATTCA
TTCGCGTCACAATTTAGGCTGGACACCACGGTATGTCGCCCGCAAGACCT
AACTAATCATGCTTTACGCGTTCAAACGCACGGATGATTAGTCTATGAAC
CGACATCACAAATACATTGACGCTAGGGTAGTCACCTCAATCACGCTCCT
TGTTTTCCTGCAGATCCCATTGGGTGACAAGCACTCAGTCGATGGCTCCG
GCATTCTCTCCTCCCGAGACCAACGAGCCAACAGGCACCTGGTACGAGCA
AGCCGACAGGGTATTTCGGTTCTTCGGGTTCATCGTCGACCAAGTGGATC
CAACGAGCCGACAGGTGTACTGCTGTACTCTCCTACGAACGTCCGAAATA
CATTAACCGGAGCACGGAATATTGCTACTTTGCATCTCACGTCCCTGGAT
CACCATTCATTGCTTGATTTAGATCTTTAGATCAACGTCGGAGGAGGGAA
CTCACTGGCTCTGTACGTCTACCAGTGATTCCTCCGACATGAATTGAGAA
CGGCAGCAAGACGATAGTGCTACAGAAGTAGCAGAGTATCAAGCGGCCAG
TGTTTGGCGAGCCTGAATTAAACAGAAGGCCTCCGCAACAGTAATATCGA
ACAGCAGTACGCCTACCTGTGCCTGATGTGTTGTGGCACCTTAAGGGTAC
CCGGACAACCTCCTGCTATGTTGCCTAATTTCGAAAACAAACGCAAGAGC
GCCAGAAAATGCACTAGAGACACATATGACCAGTCGGAAGGCATCGCAAA
AAAAACAAGTCCAAAATTCTGGCACAGGGCAGCAGTAGAGACCGCTCAAA
ACGTGCTTTTCGCGCGTCTACCTCCACACGCATCCTTTGAAACCAAGATA
AAAATCCACACCAGTCTAAATTCAAGTCAAAAGAGCCCAAACGGAAGGCG
CTCAAATAAGGCCGGTGTTGCTAGGAACCTGGTCCATTGTACCAATATCA
CTAGAGGACACCCTATAGCAGCGGGGGGGTGTGTTGGCGCGCTCAAAACT
TCTTCTGTGGTGGTGGTATCGAGTGTCGTTGTAGTGGCCCACAATCTCCG
CAAATCTCCGCAAGTTAGATCGACACCCAGTGTCTTGTACTGCTTGTGCT
CGCCGCCACTGAACCCAATCTTCTGAACTGCAGGTTTACAGCAGTAGCTG
ATGCCACCAGCTACTGCTGACAACCCGCAGTTGAGGGGTTGGCGGTCCGT
GGTGGTGAGCACCGCTGTGACAAGTGTTGGGTTCCGCTTGGTTCCGGCGC
AGATTTCGGACCGTTTTCAGAGGCTGCTGCGACCTTCGATATTTCAGCCC
CAGTAGTATACCTGAACGTGCCAGCACGCACGACGCCTCTTGATGATATC
CTCTACTGATACTAGCACAACGGACCAGGTTCCTCCGGCGGGAAGGTTGT
TTTCTTTCTTTGTACTGTTATAAAGTATGAGAAAAGAGCCAGCGTCAAAA
TCCCTTGTCTGGGTACC
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Coding sequence (CDS) from alignment at Scaffold_389:612266..614182+

>EsuBft1016_7a-0001 ID=EsuBft1016_7a-0001|Name=EsuBft1016_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=369bp|location=Sequence derived from alignment at Scaffold_389:612266..614182+ (Ectocarpus subulatus male Bft15b)
ATGCACAGCCAGCGAACTCCTCGACGCGACGCCGTTTTCCACATCAAGGA
TGGCGGTATGGTGGAAAAGCAGAGGCTGCCTTTGGCAATGGCAACGTCGA
TGTCTGCCAGGACGACGGCGCAGCCTGGCGGGGGCGGCGAAAGTACGAAG
GAAAAAGCTTTCTGCACCACTCTCAGATCCCATTGGGTGACAAGCACTCA
GTCGATGGCTCCGGCATTCTCTCCTCCCGAGACCAACGAGCCAACAGGCA
CCTGGTACGAGCAAGCCGACAGGGTATTTCGGTTCTTCGGGTTCATCGTC
GACCAAGTGGATCCAACGAGCCGACAGGTGTACTGCTGTACTCTCCTACG
AACGTCCGAAATACATTAA
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