EsuBft1016_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1016_3a-0001
Unique NameEsuBft1016_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:646847..647134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1016_3
Protein domainsSignalP-noTM
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length28
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_3aEsuBft1016_3aEctocarpus subulatus male Bft15bgeneScaffold_389 646847..647134 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_3a-0001-exonEsuBft1016_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 646847..647134 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_3a-0001-exonagat-five_prime_utr-98Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_389 646847..646875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_3a-0001-cdsEsuBft1016_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 646876..647028 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_3a-0001-exonagat-three_prime_utr-167Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 647029..647134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1016_3a-0001EsuBft1016_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 646876..647028 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1016_3a-0001 ID=EsuBft1016_3a-0001|Name=EsuBft1016_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=288bp|location=Sequence derived from alignment at Scaffold_389:646847..647134+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCCGTTGGCACCGATTCTTGCGGCGGGGGATGGGCGGCGGGGGTGGGTGG
GTGCACACCGACCTGCTCGCCTGGGCGAGGGAGGTGCGCTGGCTGCTGTT
GTTGGAGATCGGGGCCGAGAAGCCACTCGTATCTTGCCCCGTGCCGTGTG
CTTCTGACTGCACGATGCGTGTGGCTATATAACAGAATGTTGCCGTTTGT
GTGGCGTCAAGTGATTTTTTTTGTGATCCGCCAACGTCGTCTAATTTGAG
GATGAGCGCGCATGTGCACCATCCGCTTGACTCTGCGT
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protein sequence of EsuBft1016_3a-0001

>EsuBft1016_3 ID=EsuBft1016_3|Name=EsuBft1016_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MGGGGGWVHTDLLAWAREVRWLLLLEIGAEKPLVSCPVPCASDCTMRVAI
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mRNA from alignment at Scaffold_389:646847..647134+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1016_3a-0001 ID=EsuBft1016_3a-0001|Name=EsuBft1016_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=288bp|location=Sequence derived from alignment at Scaffold_389:646847..647134+ (Ectocarpus subulatus male Bft15b)
GCCGTTGGCACCGATTCTTGCGGCGGGGGATGGGCGGCGGGGGTGGGTGG
GTGCACACCGACCTGCTCGCCTGGGCGAGGGAGGTGCGCTGGCTGCTGTT
GTTGGAGATCGGGGCCGAGAAGCCACTCGTATCTTGCCCCGTGCCGTGTG
CTTCTGACTGCACGATGCGTGTGGCTATATAACAGAATGTTGCCGTTTGT
GTGGCGTCAAGTGATTTTTTTTGTGATCCGCCAACGTCGTCTAATTTGAG
GATGAGCGCGCATGTGCACCATCCGCTTGACTCTGCGT
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Coding sequence (CDS) from alignment at Scaffold_389:646847..647134+

>EsuBft1016_3a-0001 ID=EsuBft1016_3a-0001|Name=EsuBft1016_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_389:646847..647134+ (Ectocarpus subulatus male Bft15b)
ATGGGCGGCGGGGGTGGGTGGGTGCACACCGACCTGCTCGCCTGGGCGAG
GGAGGTGCGCTGGCTGCTGTTGTTGGAGATCGGGGCCGAGAAGCCACTCG
TATCTTGCCCCGTGCCGTGTGCTTCTGACTGCACGATGCGTGTGGCTATA
TAA
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