EsuBft1015_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1015_9a-0001
Unique NameEsuBft1015_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:268741..269626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1015_9
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl33208|Metazoa
Length81
Hectar predicted targeting categoryother localisation
Evalue2.01e-07
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_9aEsuBft1015_9aEctocarpus subulatus male Bft15bgeneScaffold_544 268741..269626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_9a-0001-exonagat-exon-13116Ectocarpus subulatus male Bft15bexonScaffold_544 268741..269378 -
EsuBft1015_9a-0001-exonEsuBft1015_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 269450..269626 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_9a-0001-exonagat-three_prime_utr-166Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 268741..268958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_9a-0001-cdsEsuBft1015_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 268959..269378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_9a-0001EsuBft1015_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 268959..269626 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1015_9a-0001 ID=EsuBft1015_9a-0001|Name=EsuBft1015_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=815bp|location=Sequence derived from alignment at Scaffold_544:268741..269626- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGAGGTGGACCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGC
TGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAG
TTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACA
AGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGG
TGGTGACGACGCGGAGGCCGTGTGGGCCATGCTCTACGCTGACGACGCGG
CCATCGTCTCGCGCTCGCCGGAGAGTTTCGAGAAGATGATGTCGGCCATC
GTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGATGGA
GATCATGTGTATGCTGCCGAACGGGATCGGGGAACGTCCGTTCACGGTCA
GCGCCGCCGGCCATACCTACATGCAGACAGATCGGTTTGTGTACCTCGGA
CGCACCATCTCCGCGGACGGGAAGGCTGACCGGGAGATCACGAGCCGCAG
CTGCCGAGCGTGGAAGTGCTACCGCCAGAACAGTGCTTCGACGTACGACG
AGGCGACGGGCCGACCGCCAGCTCAAAATCCGGCTACTCCAGGCTGAAGT
GGTGGAGATTTTCCTATACGGGTGCGCCTCGTAGAGCCTAACAGCGGAGC
ACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACACGGTGCATC
GGCTGGAGCAAGCGCAAACGCTCAGACCGCCCCCTGTCCTATGCACAGGC
CCCCATCCAGGCCGGCTGCGAGGAAACCATCGAGGCCACCGTGCAAAAAC
GGAGACTTCTGTGTT
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protein sequence of EsuBft1015_9a-0001

>EsuBft1015_9 ID=EsuBft1015_9|Name=EsuBft1015_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=198bp
MVRGGPRPPTGMQPGPAAVQLVLCRDAHGRRGRVRQGPQGDGGHGQDRDT
SGVHGQEGQVGGEEDDGGDDAEAVWAMLYADDAAIVSRSPESFEKMMSAI
VRVAGLFGLMVSEPKMEIMCMLPNGIGERPFTVSAAGHTYMQTDRFVYLG
RTISADGKADREITSRSCRAWKCYRQNSASTYDEATGRPPAQNPATPG
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mRNA from alignment at Scaffold_544:268741..269626-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1015_9a-0001 ID=EsuBft1015_9a-0001|Name=EsuBft1015_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=886bp|location=Sequence derived from alignment at Scaffold_544:268741..269626- (Ectocarpus subulatus male Bft15b)
ATGGTTCGAGGTGGACCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGC
TGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAG
TTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACA
AGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGANGTGACGGCGGA
CATGGTCAAGATCGAGACACAAGTCGAGTACACGGGCAGCAAGGGTAGGT
CGGCGGGGAAGAAGACGACGGTGGTGACGACGCGGAGGCCGTGTGGGCCA
TGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCGCCGGAGAGTTTC
GAGAAGATGATGTCGGCCATCGTGCGCGTGGCCGGCCTGTTCGGACTGAT
GGTATCGGAGCCAAAGATGGAGATCATGTGTATGCTGCCGAACGGGATCG
GGGAACGTCCGTTCACGGTCAGCGCCGCCGGCCATACCTACATGCAGACA
GATCGGTTTGTGTACCTCGGACGCACCATCTCCGCGGACGGGAAGGCTGA
CCGGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCAGA
ACAGTGCTTCGACGTACGACGAGGCGACGGGCCGACCGCCAGCTCAAAAT
CCGGCTACTCCAGGCTGAAGTGGTGGAGATTTTCCTATACGGGTGCGCCT
CGTAGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGC
CAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGCAAACGCTCAGACCG
CCCCCTGTCCTATGCACAGGCCCCCATCCAGGCCGGCTGCGAGGAAACCA
TCGAGGCCACCGTGCAAAAACGGAGACTTCTGTGTT
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Coding sequence (CDS) from alignment at Scaffold_544:268741..269626-

>EsuBft1015_9a-0001 ID=EsuBft1015_9a-0001|Name=EsuBft1015_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=597bp|location=Sequence derived from alignment at Scaffold_544:268741..269626- (Ectocarpus subulatus male Bft15b)
ATGGTTCGAGGTGGACCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGC
TGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAG
TTCGACAAGGACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACA
AGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGG
TGGTGACGACGCGGAGGCCGTGTGGGCCATGCTCTACGCTGACGACGCGG
CCATCGTCTCGCGCTCGCCGGAGAGTTTCGAGAAGATGATGTCGGCCATC
GTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCGGAGCCAAAGATGGA
GATCATGTGTATGCTGCCGAACGGGATCGGGGAACGTCCGTTCACGGTCA
GCGCCGCCGGCCATACCTACATGCAGACAGATCGGTTTGTGTACCTCGGA
CGCACCATCTCCGCGGACGGGAAGGCTGACCGGGAGATCACGAGCCGCAG
CTGCCGAGCGTGGAAGTGCTACCGCCAGAACAGTGCTTCGACGTACGACG
AGGCGACGGGCCGACCGCCAGCTCAAAATCCGGCTACTCCAGGCTGA
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