EsuBft1015_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1015_11a-0001
Unique NameEsuBft1015_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:244751..249088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1015_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length377
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_11aEsuBft1015_11aEctocarpus subulatus male Bft15bgeneScaffold_544 244751..249088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_11a-0001EsuBft1015_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 244861..245460 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_11a-0001-exonagat-exon-13118Ectocarpus subulatus male Bft15bexonScaffold_544 244751..247599 +
EsuBft1015_11a-0001-exonEsuBft1015_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 248162..249088 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_11a-0001-exonagat-five_prime_utr-94Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 244751..244860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_11a-0001-cdsEsuBft1015_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 244861..245460 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_11a-0001-exonagat-three_prime_utr-156Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 245461..247599 +
EsuBft1015_11a-0001-exonagat-three_prime_utr-157Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 248162..249088 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1015_11a-0001 ID=EsuBft1015_11a-0001|Name=EsuBft1015_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3776bp|location=Sequence derived from alignment at Scaffold_544:244751..249088+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGTAATGGATTTGCTTTATCTGCGCAGAACCCGCTTTCCCGTTTTGGT
AGAGAGAAGTTTTGGGCCGACAGCGGTGCGACGAACACTTTTGTGAGCAG
TAGTCATCAAATGTTCGACTTGAGGCCAGTGCCGACAGGCAAAGAGTACA
TTCAGGTTGGCAACGGTGCCTATTTGCGCGTACAATGTGTGGGGAAGGTC
AACATGGCTTTCCACATGCAAGACCAGAGAGGAGAGCGTGATTTTTGCGT
GCAAACGTCGGACGTGTATGTTGTGCCCGGAATCACTTTCAATTTTTTTT
CGTTGCACCACACGCAGCGTAGGCAACGGATCGTCCTTGACGAGACAGGT
GTACATCTCTTTGTTGGTAGACTTTCCTTCGCATACTCTGACGTAGGATG
CTCGCTCTGGGCTACGCGATTGACCCAGGATTACTGTGGTCGTGCTGCGA
CCTCTAGCCCCGATGCCCCTCCCCGTGTGTCTGCCCAAGCGTCCCAAACT
AGCATTGGCACAGGATTTGTTGCGGCCACCCCTTCCCTTTTCCAGAGTGC
AGGAACGGGCACGAGTGCGAGTGCGACTTCTGGCTTCCAGTCCGTCGCAT
CGGCCGGCGTTGTACCTGCGACTTCTGGCTTCCAGTCCGTCGCACCGGCC
GGCGTTGTACCTTCGGCTGCAGACGTCCAGCCCACAGGATCCGACGGTGT
AGTACCTTAGACTTCGAGCGTCCCCTCTACCTCTTCCGGTGTAGTGCTTC
CGATTTGTGTTTTTCCGTCCGTCGACGTAGACCCAACCCCCACGACGATT
CCCGATTTTCAGCCTGTGATTACGGCTGCCGTAGAATCGTCTTCGATTGT
ATCTCCCCCTGCCGTAGAGCTGACAGACTTTCGCGAGATAGAGATCAACC
CCCTTTTTTCCCAGGATGCATTCCCAATCATGGACATGAGCATGTTTCTG
AATGGCAAATACACGGTCCCCCCGGGTGATTTTTTTCCTGATGCGCTTGA
ATTAGCTGAGTCTGCGGATCCACCCCACCTTGCATTCACTGTGCAGCATG
ATGATTTGGAAGTGTTGAGCGGTTTTCTTTCCGAGTGCAATGAGCAGCAG
GCCGCAGCCCCTCCGTCTCTTTCCCACGCGTTGGCGATTATCGCCCCCGG
TGCTTCCCCATTTTCGGTAGGAAAATCCACGCCCACCATCGACATTAACC
TGTTCCACGCTTCCACCGGCCACGTAAATGAATTTTTGATGCGTGAGACT
GCCAAGCAGCAGGGTGTTCGGCTGGTCGGGGAGCTGCAGCCATGTGTTGG
CTGTGTAGAGGCGAAGGGCAGGAGGGCCCCGGTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGAGGATAATCAGGGAGCGATTCAGATTGCGCACAACC
CGATCACGAACTCCAACTCGAAACACATCGATGTACGACATCACTTTATC
AGGGAGCTGGTAGAGAGGAAGGAGATTTCAATTACTCATGTGCCGACGCA
ATTTCAGCATGCAGATTTCTTGACGAAGGCCATTAGCAAGGAGTCTTTTG
CGTTGCACCGTGACTTTGTGATGAACTTGCAGTGAAGGAAGTGTTTTGGG
GTCGATTCGTATTCTGTGATGGAGAGAGTGAGAGAGACGAGAGATTGGAC
AAGAGAAAAGAGAGAGTCTGGTGAAGGTTGGAGGAGTTGTTGTGTTTAGT
TTTTCTTGATTGTTTTGGAGGAGTTTTGATTGTGTTTGATTTTTCTTGTG
ATGGACTTGGAGGATTTTGGATTGTTTTGGTGAAGATATTGGTTTTTGTT
TGTTTTGGAGAGATGGTAAAGAGGAATTTGGTTTTTCTCGGAGCATGACG
ATGCATACGAGTAGGGGGGCTATTTGATATATTGGGGGTACATGTAGCAT
AGTATAACGGTTGAGATGTTATGTACGTACGTACGAAAGTTACAGTGATG
AGATGCGGAAGAATAGGAAACTTCTACATATATTCCTTGGTTGCGAGAGG
TATTTGGTGAAGGTTCAGAGAGATTCGTTGAGTGACAAAGAGTGAAGGCG
TGACCAGATGCCGTGATGGTTTGACGAGCACTGGCACGGCCCCGATTAAT
ACTATACTTTGCAACACGTTTTCAACACGTTTCTACCCATCCACGCTCCG
CCATGAGCCACCCGCTTTGAGCTCCAACCACAAAGAATCGAGCCACCGGA
ATTATCGATCAGAAGAAATGGTACTCAGCAGAGAACATGAGCACAGAGTT
GTAGCGGAGATGATTTGGCAGGCGAGACTGTAGTTGTTTTATTGTTTCGA
ACCCCGAAATTCCGGTACTGGGGCCATTACTCCGGATACCCTCGGAACCT
GCTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGAAAGAAGA
GATGGTACTCAGCAGAGAACATGAGCACAGAGTTGTAGCGGAGATAATTT
GGCAGGCGAGACTGTAGTTGTTTTATTGTTTCGAACCCCGAAATTCCGGT
ACTGGGGCCATTACCCCGGATACCCTCGGAACCTGCTGTGTTGTTGCTGC
TTGTTTTNTTTATTGTTCCGAACCCCGAAATTCCGGTACTCGGGCCATTA
CTCCGGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCTTGTTTCTTGTTT
TTGTTTTGTTGTTGAGATGAGACACAAGCGCGCCTTCGCCCCTTGTGCTC
ACTCTCATCTAGCACCCATCAAAGCCTGACCAGGGAGTCAGTTGATAAGA
GCATCTATCTACATTTCTCTTTCCAAAGCTCGCTCCGGCCTACCGATCTC
ACAGCAGTGTAGACCGACCTCTGTGATATAGCGGTGACAGCAGTGTAACC
TCTGTGGTAGACTACAAAGTCTACGAGCTACAGCAGCACCGCCACCTCCG
CTGCTGCAGGACGCCACATTTTGTGA
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protein sequence of EsuBft1015_11a-0001

>EsuBft1015_11 ID=EsuBft1015_11|Name=EsuBft1015_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=199bp
MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQRGERDFCVQTS
DVYVVPGITFNFFSLHHTQRRQRIVLDETGVHLFVGRLSFAYSDVGCSLW
ATRLTQDYCGRAATSSPDAPPRVSAQASQTSIGTGFVAATPSLFQSAGTG
TSASATSGFQSVASAGVVPATSGFQSVAPAGVVPSAADVQPTGSDGVVP
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mRNA from alignment at Scaffold_544:244751..249088+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1015_11a-0001 ID=EsuBft1015_11a-0001|Name=EsuBft1015_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4338bp|location=Sequence derived from alignment at Scaffold_544:244751..249088+ (Ectocarpus subulatus male Bft15b)
GTGGTAATGGATTTGCTTTATCTGCGCAGAACCCGCTTTCCCGTTTTGGT AGAGAGAAGTTTTGGGCCGACAGCGGTGCGACGAACACTTTTGTGAGCAG TAGTCATCAAATGTTCGACTTGAGGCCAGTGCCGACAGGCAAAGAGTACA TTCAGGTTGGCAACGGTGCCTATTTGCGCGTACAATGTGTGGGGAAGGTC AACATGGCTTTCCACATGCAAGACCAGAGAGGAGAGCGTGATTTTTGCGT GCAAACGTCGGACGTGTATGTTGTGCCCGGAATCACTTTCAATTTTTTTT CGTTGCACCACACGCAGCGTAGGCAACGGATCGTCCTTGACGAGACAGGT GTACATCTCTTTGTTGGTAGACTTTCCTTCGCATACTCTGACGTAGGATG CTCGCTCTGGGCTACGCGATTGACCCAGGATTACTGTGGTCGTGCTGCGA CCTCTAGCCCCGATGCCCCTCCCCGTGTGTCTGCCCAAGCGTCCCAAACT AGCATTGGCACAGGATTTGTTGCGGCCACCCCTTCCCTTTTCCAGAGTGC AGGAACGGGCACGAGTGCGAGTGCGACTTCTGGCTTCCAGTCCGTCGCAT CGGCCGGCGTTGTACCTGCGACTTCTGGCTTCCAGTCCGTCGCACCGGCC GGCGTTGTACCTTCGGCTGCAGACGTCCAGCCCACAGGATCCGACGGTGT AGTACCTTAGACTTCGAGCGTCCCCTCTACCTCTTCCGGTGTAGTGCTTC CGATTTGTGTTTTTCCGTCCGTCGACGTAGACCCAACCCCCACGACGATT CCCGATTTTCAGCCTGTGATTACGGCTGCCGTAGAATCGTCTTCGATTGT ATCTCCCCCTGCCGTAGAGCTGACAGACTTTCGCGAGATAGAGATCAACC CCCTTTTTTCCCAGGATGCATTCCCAATCATGGACATGAGCATGTTTCTG AATGGCAAATACACGGTCCCCCCGGGTGATTTTTTTCCTGATGCGCTTGA ATTAGCTGAGTCTGCGGATCCACCCCACCTTGCATTCACTGTGCAGCATG ATGATTTGGAAGTGTTGAGCGGTTTTCTTTCCGAGTGCAATGAGCAGCAG GCCGCAGCCCCTCCGTCTCTTTCCCACGCGTTGGCGATTATCGCCCCCGG TGCTTCCCCATTTTCGGTAGGAAAATCCACGCCCACCATCGACATTAACC TGTTCCACGCTTCCACCGGCCACGTAAATGAATTTTTGATGCGTGAGACT GCCAAGCAGCAGGGTGTTCGGCTGGTCGGGGAGCTGCAGCCATGTGTTGG CTGTGTAGAGGCGAAGGGCAGGAGGGCCCCGGTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNGAGGATAATCAGGGAGCGATTCAGATTGCGCACAACC CGATCACGAACTCCAACTCGAAACACATCGATGTACGACATCACTTTATC AGGGAGCTGGTAGAGAGGAAGGAGATTTCAATTACTCATGTGCCGACGCA ATTTCAGCATGCAGATTTCTTGACGAAGGCCATTAGCAAGGAGTCTTTTG CGTTGCACCGTGACTTTGTGATGAACTTGCAGTGAAGGAAGTGTTTTGGG GTCGATTCGTATTCTGTGATGGAGAGAGTGAGAGAGACGAGAGATTGGAC AAGAGAAAAGAGAGAGTCTGGTGAAGGTTGGAGGAGTTGTTGTGTTTAGT TTTTCTTGATTGTTTTGGAGGAGTTTTGATTGTGTTTGATTTTTCTTGTG ATGGACTTGGAGGATTTTGGATTGTTTTGGTGAAGATATTGGTTTTTGTT TGTTTTGGAGAGATGGTAAAGAGGAATTTGGTTTTTCTCGGAGCATGACG ATGCATACGAGTAGGGGGGCTATTTGATATATTGGGGGTACATGTAGCAT AGTATAACGGTTGAGATGTTATGTACGTACGTACGAAAGTTACAGTGATG AGATGCGGAAGAATAGGAAACTTCTACATATATTCCTTGGTTGCGAGAGG TATTTGGTGAAGGTTCAGAGAGATTCGTTGATCTCCCAAGATGGTGCACT GGAAGGCAGCACTCGGAATTTTAGGGTACGTACGGAGGACGAGTTGGATG GGGATTACATTTGAGAGGGGAGTGGTGACTGGGATGAGCATGCAGGTGTT TGTGGATGCCGACTATGCAAGCAAGGCGACAGACCGTAGATCGGTGTCAG GAGGGCTAGTGATGTGTGGGGGAGGGTGTGTGACTTGGTTTTCGAGGACA CAGAAATGTGTCACGCTTTCCACCACGGAAGCAGAGTATGTGGCAATTGC CGATGTCTTGAAGGAAGTGTTGTTCCTGAGGCAGGTGTGGCGTTTTATGT TGCCAGATGCAGGTATGCCGTGCATCCCGGTGTTCGAGGATGATCAGGGA GCGATCCAGATTGCGCACAACCCGATCACGAACTCCAACTCGAAACACAT CGATGTACGACATCACTTTATCAGGGAGTTGGTAGAGAGNCAGTGATGAG ATGCGGAAGAATAGGAAACTTCTAGACTACATATTATTAATATATTCCTT GGTTGCGAGAGGTATTTGGTGAAGGTTCAGAGAGATTCGTTGAGTGACAA AGAGTGAAGGCGTGACCAGATGCCGTGATGGTTTGACGAGCACTGGCACG GCCCCGATTAATACTATACTTTGCAACACGTTTTCAACACGTTTCTACCC ATCCACGCTCCGCCATGAGCCACCCGCTTTGAGCTCCAACCACAAAGAAT CGAGCCACCGGAATTATCGATCAGAAGAAATGGTACTCAGCAGAGAACAT GAGCACAGAGTTGTAGCGGAGATGATTTGGCAGGCGAGACTGTAGTTGTT TTATTGTTTCGAACCCCGAAATTCCGGTACTGGGGCCATTACTCCGGATA CCCTCGGAACCTGCTGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ACAGAAAGAAGAGATGGTACTCAGCAGAGAACATGAGCACAGAGTTGTAG CGGAGATAATTTGGCAGGCGAGACTGTAGTTGTTTTATTGTTTCGAACCC CGAAATTCCGGTACTGGGGCCATTACCCCGGATACCCTCGGAACCTGCTG TGTTGTTGCTGCTTGTTTTNTTTATTGTTCCGAACCCCGAAATTCCGGTA CTCGGGCCATTACTCCGGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCT TGTTTCTTGTTTTTGTTTTGTTGTTGAGATGAGACACAAGCGCGCCTTCG CCCCTTGTGCTCACTCTCATCTAGCACCCATCAAAGCCTGACCAGGGAGT CAGTTGATAAGAGCATCTATCTACATTTCTCTTTCCAAAGCTCGCTCCGG CCTACCGATCTCACAGCAGTGTAGACCGACCTCTGTGATATAGCGGTGAC AGCAGTGTAACCTCTGTGGTAGACTACAAAGTCTACGAGCTACAGCAGCA CCGCCACCTCCGCTGCTGCAGGACGCCACATTTTGTGA
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Coding sequence (CDS) from alignment at Scaffold_544:244751..249088+

>EsuBft1015_11a-0001 ID=EsuBft1015_11a-0001|Name=EsuBft1015_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=600bp|location=Sequence derived from alignment at Scaffold_544:244751..249088+ (Ectocarpus subulatus male Bft15b)
ATGTTCGACTTGAGGCCAGTGCCGACAGGCAAAGAGTACATTCAGGTTGG
CAACGGTGCCTATTTGCGCGTACAATGTGTGGGGAAGGTCAACATGGCTT
TCCACATGCAAGACCAGAGAGGAGAGCGTGATTTTTGCGTGCAAACGTCG
GACGTGTATGTTGTGCCCGGAATCACTTTCAATTTTTTTTCGTTGCACCA
CACGCAGCGTAGGCAACGGATCGTCCTTGACGAGACAGGTGTACATCTCT
TTGTTGGTAGACTTTCCTTCGCATACTCTGACGTAGGATGCTCGCTCTGG
GCTACGCGATTGACCCAGGATTACTGTGGTCGTGCTGCGACCTCTAGCCC
CGATGCCCCTCCCCGTGTGTCTGCCCAAGCGTCCCAAACTAGCATTGGCA
CAGGATTTGTTGCGGCCACCCCTTCCCTTTTCCAGAGTGCAGGAACGGGC
ACGAGTGCGAGTGCGACTTCTGGCTTCCAGTCCGTCGCATCGGCCGGCGT
TGTACCTGCGACTTCTGGCTTCCAGTCCGTCGCACCGGCCGGCGTTGTAC
CTTCGGCTGCAGACGTCCAGCCCACAGGATCCGACGGTGTAGTACCTTAG
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