EsuBft1013_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1013_9a-0001
Unique NameEsuBft1013_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:604305..605509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1013_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length120
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_9aEsuBft1013_9aEctocarpus subulatus male Bft15bgeneScaffold_373 604305..605509 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_9a-0001-exonEsuBft1013_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 604305..605509 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_9a-0001-exonagat-five_prime_utr-88Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 604305..604324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_9a-0001-cdsEsuBft1013_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 604325..604474 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_9a-0001-exonagat-three_prime_utr-149Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 604475..605509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_9a-0001EsuBft1013_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 604325..604474 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1013_9a-0001 ID=EsuBft1013_9a-0001|Name=EsuBft1013_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1205bp|location=Sequence derived from alignment at Scaffold_373:604305..605509+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTTGCAGTAAGGGGAAGGCATGGTCATCGCCAAGAAGGAATACCAACTG
TTTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGCGGAGTGTGGGACTTG
CCCCTGTCCGCGCCGTTCGGTATCCACAACACGGACCTGGAAGATTCGGA
CATTGAATACTTTACATATCCGCGTTGATGTGCCGGGGATCATTCGGACA
TAGATGTCGACATAGATGTCGCCGACGGTGGGTCTGCGTCACAGCAGAAG
GTAGGTAAACGTGCAGCACAGAGGGGGGTGTAGCGTGGGAGAGGAGGACC
AGCCGTTGTTGGGCCATTTGGTGTGTGTGGTGTGCGAAGCGGTCCGCGTT
CCAAGAGAGCCCCGTTGGCAAGCAAGTGTGTGTGTGTCGGCAAATAAATG
CGAAATATTTCATCTTTTTCGTCCCTCAACATTCAACAGGAAAATGCGTG
CCCACCAAGCGCGGTGGGTTGTCCACAAATGACCCCGGTTTTTCAAACTT
CAAGAACACGATGAAACATGCACAGCAGTTGGTTGTGGCGAGAAGATGAA
CCCAG
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protein sequence of EsuBft1013_9a-0001

>EsuBft1013_9 ID=EsuBft1013_9|Name=EsuBft1013_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MVIAKKEYQLFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_373:604305..605509+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1013_9a-0001 ID=EsuBft1013_9a-0001|Name=EsuBft1013_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1205bp|location=Sequence derived from alignment at Scaffold_373:604305..605509+ (Ectocarpus subulatus male Bft15b)
CGTTGCAGTAAGGGGAAGGCATGGTCATCGCCAAGAAGGAATACCAACTG
TTTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGCGGAGTGTGGGACTTG
CCCCTGTCCGCGCCGTTCGGTATCCACAACACGGACCTGGAAGATTCGGA
CATTGAATACTTTACATATCCGCGTTGATGTGCCGGGGATCATTCGGACA
TAGATGTCGACATAGATGTCGCCGACGGTGGGTCTGCGTCACAGCAGAAG
GTAGGTAAACGTGCAGCACAGAGGGGGGTGTAGCGTGGGAGAGGAGGACC
AGCCGTTGTTGGGCCATTTGGTGTGTGTGGTGTGCGAAGCGGTCCGCGTT
CCAAGAGAGCCCCGTTGGCAAGCAAGTGTGTGTGTGTCGGCAAATAAATG
CGAAATATTTCATCTTTTTCGTCCCTCAACATTCAACAGGAAAATGCGTG
CCCACCAAGCGCGGTGGGTTGTCCACAAATGACCCCGGTTTTTCAAACTT
CAAGAACACGATGAAACATGCACAGCAGTTGGTTGTGGCGAGAAGATGAA
CCCAG
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Coding sequence (CDS) from alignment at Scaffold_373:604305..605509+

>EsuBft1013_9a-0001 ID=EsuBft1013_9a-0001|Name=EsuBft1013_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_373:604305..605509+ (Ectocarpus subulatus male Bft15b)
ATGGTCATCGCCAAGAAGGAATACCAACTGTTTAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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