EsuBft1013_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1013_8a-0001
Unique Name	EsuBft1013_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_373	contig	Scaffold_373:597208..601453 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FRT2
ProteomeId	EsuBft1013_8
Protein domains	IPR002889
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	393
Hectar predicted targeting category	no signal peptide or anchor
Evalue	2.29e-22
EggNOG OGs	KOG4157@1\|root,KOG4157@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K06560
KEGG Pathway	ko04145,ko05152,map04145,map05152
Description	protein xylosyltransferase activity
COG category	U
BRITE	ko00000,ko00001,ko04090,ko04091,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_8a	EsuBft1013_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_373 597208..601453 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_8a-0001-exon	agat-exon-63050	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 597208..597212 +
EsuBft1013_8a-0001-exon	EsuBft1013_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 597527..601453 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_8a-0001-cds	EsuBft1013_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_373 597208..597212 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_8a-0001-exon	agat-three_prime_utr-148	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_373 597654..601453 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_8a-0001	EsuBft1013_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_373 597208..597653 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:597208..601453+
coding sequence from alignment at Scaffold_373:597208..601453+

spliced messenger RNA

>EsuBft1013_8a-0001 ID=EsuBft1013_8a-0001|Name=EsuBft1013_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3932bp|location=Sequence derived from alignment at Scaffold_373:597208..601453+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGCTGGTGCGGCACGACCGACGACTACACGCGGTACGGGACCGG
TACCTGCAACTTCTCGTGCAGCGGCGACAACGAGCAGACATGTGGAGGCA
GAGAGTCGGCCAACGTCTGGACCGTCGACTGATGGCTTCACGCGAGTGCA
CCCTAGATGTGGGAAGTCCCCAGTGGCCCGTTCGTTGCGTCGGTGTAAAG
CTTCGATGGTTACGGCCGGTTTTCACCGATCCAAATCGGGTTGCTCTCCG
GCTTCATAACCGTAATAACTACACCCCCCGCTGGGTAGGGTTAGGTACAA
AATCATTTTTTTTTTCCCTGCACCCCGTGTGTCGGGTGCCTTGTCCGTTT
GTTGTGCCCGCCCGACAAGAGCGCACGCTGCATGCAGCTCAGGGAGAAGG
CTTACATGGTCAGCGGGATAGAAAAGGCCGCCCGAACCGGTAGCTGAACC
AGTGAGAAGGCTTACATGGTCAGCGGGATAGAAAAGGCCGCCCGAACCGA
TACCTGAACCAGTTCGGGGACTGAGTGATTCTCCTTCCACGGGTTTCGGG
TGCTTTTCAAGGGGTGGAAGATGGCGCGGACGGAGGGGGGGGGGGGTTAC
GGTGGCACACGTTTTTGAAGGGGTGGGTATCCCCGGAACGCTTGGGGTGC
CGGCGCAGTGATGATGATGCTGGCATGCCAATGGTGCGTATCGATCACGG
ATGAGAGATAAAGCACGAGCCTTGTGCGGGTACGGTGCGCGAAGCACGCA
GTTGTGGTGTTTCTTGTTGCCCTAATCCGAACACCTCTCTTGGACGTTTC
TACTTCAAGAACGTTTTAGGACAGGGATAGATTCGTTCGGTCTTTTGCTT
GCCCATCGTTTCCGTTTTTAGATACGTGAAAATAGAGAGTTCCGGCAGCC
CGTCCTGTTTCGGAATTCCTGCCGACACGAACGTAGCATGCAGTGGTCAT
GTGCATAGCCTGTGTTTTCTCAGTGGGTCCGTTTTGTTTTAGGAAAGGCT
TTCTTTTTTTGGCGGTCATCGTCAGCATCGTGTCAAGCTCTCAGCTTGCC
GATATGTGGTAATTCCCGCCGTGGCGCGTCGTCAAACCTGTGGGCTTCTC
GTCTGCCGTGGCGAATTCTTGCGTGTGTTTGGGAGAGCGGTTGCAATATC
TCGACCAGCGTTGCAGGCTTCTCGACCTCTTGTAGAGTTGTTTTGGCCTC
GCCTCCGTATTTCAGTTGGTGCAACAATCTCTCATGCCCGCACCCACCGT
CCTCGAGATTCCTTTGAGGCCGAACGTGCTTCGGGAGCCACCCAGAAAGC
ACACATGTTTTGATGATTTTACGATGCGGCCACGACTTGTGTCTGCTCAG
GTTAGCTTGTCTCGCCGGAACAGTTTTATTCGGGTCCTCTGTTGCGACCC
CCCTCCCGGAAGACGCCTTCTTGTTTCCGGCCCTCCTGGGATAGCACCAG
TGATAGGGAGGTGTTTGGGAGGGGGGTGTACTCAATAGTCGTGCATGCCG
TAGTCGCTAGACCATTGACCTCGATGTTTGGGGGAGATTGTTTGTTTTTC
GATGGCGGAAGGGTAGGGTTAGGATTTGCGCCGAGGAGATGTTTGGGGGC
CGCAGAAATGCGGTAGCTGATTGCTGCTGCTGCTGCTGCTGCTGCTGTTA
CTGTGCTGCTGCGGTTGACACGCACGGAAGGGCTGTGGGACCGGGGGTGT
GGATCATTCGTCCCCTGCTGTGGAGGCCTCTTTTGCTGTCGATGCAGATG
GCGGTATTTTAGTTTCGCCAAAGGGGCACGGCTTGTTGTTGCCTTCAGAT
CAAGAAAGACTCTTCGACAGGGAGAAAACTCACTTGCGTGGTGGTTTGTA
CGGAGTGTGGAAGTTTCGCGATGAACGAACGGGCTTGTCGCGATGGAGGG
AGACGAGGTTGGGGCTTGGCTTAAGGATGTCCCGCCTTGTCCTTGCTTTC
CGGGAGCTGGGGCTAGGCTTTCCGCAGCAAGCTTGTCTTCGTTGGGCGGG
TATGTCGAAAGGGAGCGACGAGCGGGAGAGAGAGAGAATCAACCCTCACC
CTAACCCTAAGTCATAACCCTAAGTCAGGGGCGGCGGCGGGAAGCTACAG
AGCGGAAATGGGCGATAACGTGGGTACGCATGCAAGCCGCGATGGTATCG
TGCATCTGCCCTGCCGGAGAAACGAACGCAGCGGGGGTTACGGGAAGAGC
ACATCACTGACAGGCCTTCCCCGCTTCCTTTTGTGGATATCCCATGGGAT
ACTGAAGACCTTCCTGGTTAGCCCTGGGTTGCGGTGCTGCCTCCTGAATG
TCTTGGAAGTCTGATTGGGAAGGGGTGGAAGGAGATACAAACGCCGTCCA
TGCGCCGGCTCCGGGGGGTGGGTGGGGGTGGTTGACAATGAGCCGCCGCA
GCGAGCGAACGAAGTCCCCTCTTGCGCTGAGTGTAGATAAAGTTGACAGC
TCGAGTTCTGGCATGCAACCAATGCCGAAGGGGTACGTGCCTAACCGAGA
CGCGCTAGGTCTATATGACGTTGGATACCAGGGGAGTGGAGGCGTCGGTG
CTACCTCCTGACCACCGTGCAAGACATGCTTCGGTATTTTAGCTTACCGT
TTGGTAAGGGTTAACATAGTAAAACCCTATTCGTAGGGTTTGGTGGCCCC
TAGCGAAGCTACTGGGTCAGCCCCAATTTGACCATCAATGGAGTAAGATG
CGGTGTGTGCCTCATGATCCGCTTTGCTTTTCAAACTATGACCAAGAATG
GCGGCATCGAGGTTAATGCTTCGAGAGGAGGCGCGCGTTGGGGCGTGTGT
CATGAGTGACCTGGTGGTGGTGATGGGTATCCTGGGGAGGGTGGAGGTTA
GGTTTTTCGTTGCTTGTGCTGAGTGCATATCATCGATTTGTATGGCTTGA
TTTACGGTGATGGCGATGTTGGGTGTGTGTGTGGTGATTGGTGCGTTGTT
GGGCCCGTGCCGATACGGCGGTGTAGTGACCACCCGTTGGTCTCGTGTGT
TGATTTTCATTTCAATTTTTCGTGTTTTTTTTTTCTGGTTTCGAGATCCC
GTCGGCGATCCTACACCCTACAGGTCGGTTGACCTTATCCGACCCGTTTC
GGGTTGCCTTGGATTCGTTTGTCGACTCCAATCAGGGCATTCCACCAAGC
GTGCGGCTTCCAGTTGTTGGTAGTTGGGGCAAGACACGTGTTGTTTGCTT
CATGTGCTGTGGTTCTTGGAACTATTTCGCGCAACCACCTATTCGGGCAT
CATCCGACGTTGCGAGCAACAGCAGCAGCGGCAGCAGTTGTTGGTGGCAA
CAGCAGTTTGTCGGGTTCGCTGGCCAAGCACTGCGATTTGCGCAGGATTT
GTTGTCTGCCCCCCCCCCCGCCCCCCACCCATTTTTCTCTCCATTCGGAG
TAAGCAGGGAGGAGGGCGGGGGGAGCGCGCGTGATGGTCTGTTGCACCAC
CAAACATGGCGCGGCGTTTGCTGCGTCAGGGTCGTGGTGACACCATCTCC
CACTTGGGTTGCCCTCGGTGTGTTCTACAGTAGTGGTGCGTGTTTGCCTG
TCTGTGCGATACCGGCCGTAGCCTGGCTCGCTAGGCTTGTCCGTACGATA
GCGTAAAACAACCAGTGTTCATCAAGATGAATTTGCACTTTGTTGTTGGA
AACCGTTGGCACGACCTTGTCTAATGTCTGCGTATTTTGAATGTTTTTGA
GCCGGTGTTTGATTGGATTGGGATCGAGGTCTACCCTCAGCGGTGTGCGT
GTTAGTAGCAGTCGATTCTTGTTCTTGATCATAAAATAATATTAAGAACT
TGAATTCTCCTTCCGGACTCGTTGAAAAAACCAACGACTTCGGCTGCTGT
ATGTAAGCTGTGTTTCCCCCAACAGCAGTTAGTTGGTTTCTATCTTCACT
CCCTGGCTTATTGCACTCATTCTGTCCTGCAC

protein sequence of EsuBft1013_8a-0001

>EsuBft1013_8 ID=EsuBft1013_8|Name=EsuBft1013_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=43bp
MKCWCGTTDDYTRYGTGTCNFSCSGDNEQTCGGRESANVWTVD

mRNA from alignment at Scaffold_373:597208..601453+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1013_8a-0001 ID=EsuBft1013_8a-0001|Name=EsuBft1013_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4246bp|location=Sequence derived from alignment at Scaffold_373:597208..601453+ (Ectocarpus subulatus male Bft15b)
ATGAAGTATGTAAGCCAGGATGCGGGGTGGGCGAGGAGCGGTTTACTCTC
CTCCATTCACTGATGCTGTCCCTGCTTCGATATCGATTATTTCTTTTTAC
CATCTGAAGCGCGCAATATTAAACATGAACGCACAGCAGTCCTTGCATGA
GTTTGCAACGTCGTTTTCTCAGAAGCATCATCATTGTCCACTCGCGTTCT
GTTCCTTTCCTCTTTTGTGTTGTGCGTAACCTCAAAGAAGCATTATTGTT
GATTCACTCGCGTTGGGTTCATTTCCTCATTTGTGTTTCGCGTCCCCACG
CCTTTTTGTCTCTCCGCAGGTGCTGGTGCGGCACGACCGACGACTACACG
CGGTACGGGACCGGTACCTGCAACTTCTCGTGCAGCGGCGACAACGAGCA
GACATGTGGAGGCAGAGAGTCGGCCAACGTCTGGACCGTCGACTGATGGC
TTCACGCGAGTGCACCCTAGATGTGGGAAGTCCCCAGTGGCCCGTTCGTT
GCGTCGGTGTAAAGCTTCGATGGTTACGGCCGGTTTTCACCGATCCAAAT
CGGGTTGCTCTCCGGCTTCATAACCGTAATAACTACACCCCCCGCTGGGT
AGGGTTAGGTACAAAATCATTTTTTTTTTCCCTGCACCCCGTGTGTCGGG
TGCCTTGTCCGTTTGTTGTGCCCGCCCGACAAGAGCGCACGCTGCATGCA
GCTCAGGGAGAAGGCTTACATGGTCAGCGGGATAGAAAAGGCCGCCCGAA
CCGGTAGCTGAACCAGTGAGAAGGCTTACATGGTCAGCGGGATAGAAAAG
GCCGCCCGAACCGATACCTGAACCAGTTCGGGGACTGAGTGATTCTCCTT
CCACGGGTTTCGGGTGCTTTTCAAGGGGTGGAAGATGGCGCGGACGGAGG
GGGGGGGGGGTTACGGTGGCACACGTTTTTGAAGGGGTGGGTATCCCCGG
AACGCTTGGGGTGCCGGCGCAGTGATGATGATGCTGGCATGCCAATGGTG
CGTATCGATCACGGATGAGAGATAAAGCACGAGCCTTGTGCGGGTACGGT
GCGCGAAGCACGCAGTTGTGGTGTTTCTTGTTGCCCTAATCCGAACACCT
CTCTTGGACGTTTCTACTTCAAGAACGTTTTAGGACAGGGATAGATTCGT
TCGGTCTTTTGCTTGCCCATCGTTTCCGTTTTTAGATACGTGAAAATAGA
GAGTTCCGGCAGCCCGTCCTGTTTCGGAATTCCTGCCGACACGAACGTAG
CATGCAGTGGTCATGTGCATAGCCTGTGTTTTCTCAGTGGGTCCGTTTTG
TTTTAGGAAAGGCTTTCTTTTTTTGGCGGTCATCGTCAGCATCGTGTCAA
GCTCTCAGCTTGCCGATATGTGGTAATTCCCGCCGTGGCGCGTCGTCAAA
CCTGTGGGCTTCTCGTCTGCCGTGGCGAATTCTTGCGTGTGTTTGGGAGA
GCGGTTGCAATATCTCGACCAGCGTTGCAGGCTTCTCGACCTCTTGTAGA
GTTGTTTTGGCCTCGCCTCCGTATTTCAGTTGGTGCAACAATCTCTCATG
CCCGCACCCACCGTCCTCGAGATTCCTTTGAGGCCGAACGTGCTTCGGGA
GCCACCCAGAAAGCACACATGTTTTGATGATTTTACGATGCGGCCACGAC
TTGTGTCTGCTCAGGTTAGCTTGTCTCGCCGGAACAGTTTTATTCGGGTC
CTCTGTTGCGACCCCCCTCCCGGAAGACGCCTTCTTGTTTCCGGCCCTCC
TGGGATAGCACCAGTGATAGGGAGGTGTTTGGGAGGGGGGTGTACTCAAT
AGTCGTGCATGCCGTAGTCGCTAGACCATTGACCTCGATGTTTGGGGGAG
ATTGTTTGTTTTTCGATGGCGGAAGGGTAGGGTTAGGATTTGCGCCGAGG
AGATGTTTGGGGGCCGCAGAAATGCGGTAGCTGATTGCTGCTGCTGCTGC
TGCTGCTGCTGTTACTGTGCTGCTGCGGTTGACACGCACGGAAGGGCTGT
GGGACCGGGGGTGTGGATCATTCGTCCCCTGCTGTGGAGGCCTCTTTTGC
TGTCGATGCAGATGGCGGTATTTTAGTTTCGCCAAAGGGGCACGGCTTGT
TGTTGCCTTCAGATCAAGAAAGACTCTTCGACAGGGAGAAAACTCACTTG
CGTGGTGGTTTGTACGGAGTGTGGAAGTTTCGCGATGAACGAACGGGCTT
GTCGCGATGGAGGGAGACGAGGTTGGGGCTTGGCTTAAGGATGTCCCGCC
TTGTCCTTGCTTTCCGGGAGCTGGGGCTAGGCTTTCCGCAGCAAGCTTGT
CTTCGTTGGGCGGGTATGTCGAAAGGGAGCGACGAGCGGGAGAGAGAGAG
AATCAACCCTCACCCTAACCCTAAGTCATAACCCTAAGTCAGGGGCGGCG
GCGGGAAGCTACAGAGCGGAAATGGGCGATAACGTGGGTACGCATGCAAG
CCGCGATGGTATCGTGCATCTGCCCTGCCGGAGAAACGAACGCAGCGGGG
GTTACGGGAAGAGCACATCACTGACAGGCCTTCCCCGCTTCCTTTTGTGG
ATATCCCATGGGATACTGAAGACCTTCCTGGTTAGCCCTGGGTTGCGGTG
CTGCCTCCTGAATGTCTTGGAAGTCTGATTGGGAAGGGGTGGAAGGAGAT
ACAAACGCCGTCCATGCGCCGGCTCCGGGGGGTGGGTGGGGGTGGTTGAC
AATGAGCCGCCGCAGCGAGCGAACGAAGTCCCCTCTTGCGCTGAGTGTAG
ATAAAGTTGACAGCTCGAGTTCTGGCATGCAACCAATGCCGAAGGGGTAC
GTGCCTAACCGAGACGCGCTAGGTCTATATGACGTTGGATACCAGGGGAG
TGGAGGCGTCGGTGCTACCTCCTGACCACCGTGCAAGACATGCTTCGGTA
TTTTAGCTTACCGTTTGGTAAGGGTTAACATAGTAAAACCCTATTCGTAG
GGTTTGGTGGCCCCTAGCGAAGCTACTGGGTCAGCCCCAATTTGACCATC
AATGGAGTAAGATGCGGTGTGTGCCTCATGATCCGCTTTGCTTTTCAAAC
TATGACCAAGAATGGCGGCATCGAGGTTAATGCTTCGAGAGGAGGCGCGC
GTTGGGGCGTGTGTCATGAGTGACCTGGTGGTGGTGATGGGTATCCTGGG
GAGGGTGGAGGTTAGGTTTTTCGTTGCTTGTGCTGAGTGCATATCATCGA
TTTGTATGGCTTGATTTACGGTGATGGCGATGTTGGGTGTGTGTGTGGTG
ATTGGTGCGTTGTTGGGCCCGTGCCGATACGGCGGTGTAGTGACCACCCG
TTGGTCTCGTGTGTTGATTTTCATTTCAATTTTTCGTGTTTTTTTTTTCT
GGTTTCGAGATCCCGTCGGCGATCCTACACCCTACAGGTCGGTTGACCTT
ATCCGACCCGTTTCGGGTTGCCTTGGATTCGTTTGTCGACTCCAATCAGG
GCATTCCACCAAGCGTGCGGCTTCCAGTTGTTGGTAGTTGGGGCAAGACA
CGTGTTGTTTGCTTCATGTGCTGTGGTTCTTGGAACTATTTCGCGCAACC
ACCTATTCGGGCATCATCCGACGTTGCGAGCAACAGCAGCAGCGGCAGCA
GTTGTTGGTGGCAACAGCAGTTTGTCGGGTTCGCTGGCCAAGCACTGCGA
TTTGCGCAGGATTTGTTGTCTGCCCCCCCCCCCGCCCCCCACCCATTTTT
CTCTCCATTCGGAGTAAGCAGGGAGGAGGGCGGGGGGAGCGCGCGTGATG
GTCTGTTGCACCACCAAACATGGCGCGGCGTTTGCTGCGTCAGGGTCGTG
GTGACACCATCTCCCACTTGGGTTGCCCTCGGTGTGTTCTACAGTAGTGG
TGCGTGTTTGCCTGTCTGTGCGATACCGGCCGTAGCCTGGCTCGCTAGGC
TTGTCCGTACGATAGCGTAAAACAACCAGTGTTCATCAAGATGAATTTGC
ACTTTGTTGTTGGAAACCGTTGGCACGACCTTGTCTAATGTCTGCGTATT
TTGAATGTTTTTGAGCCGGTGTTTGATTGGATTGGGATCGAGGTCTACCC
TCAGCGGTGTGCGTGTTAGTAGCAGTCGATTCTTGTTCTTGATCATAAAA
TAATATTAAGAACTTGAATTCTCCTTCCGGACTCGTTGAAAAAACCAACG
ACTTCGGCTGCTGTATGTAAGCTGTGTTTCCCCCAACAGCAGTTAGTTGG
TTTCTATCTTCACTCCCTGGCTTATTGCACTCATTCTGTCCTGCAC

Coding sequence (CDS) from alignment at Scaffold_373:597208..601453+

>EsuBft1013_8a-0001 ID=EsuBft1013_8a-0001|Name=EsuBft1013_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=132bp|location=Sequence derived from alignment at Scaffold_373:597208..601453+ (Ectocarpus subulatus male Bft15b)
ATGAAGTGCTGGTGCGGCACGACCGACGACTACACGCGGTACGGGACCGG
TACCTGCAACTTCTCGTGCAGCGGCGACAACGAGCAGACATGTGGAGGCA
GAGAGTCGGCCAACGTCTGGACCGTCGACTGA