EsuBft1013_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1013_4a-0001
Unique NameEsuBft1013_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:545431..548036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1013_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length80
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_4aEsuBft1013_4aEctocarpus subulatus male Bft15bgeneScaffold_373 545431..548036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_4a-0001EsuBft1013_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 545431..548036 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_4a-0001-exonagat-exon-63025Ectocarpus subulatus male Bft15bexonScaffold_373 545431..545646 -
EsuBft1013_4a-0001-exonagat-exon-63024Ectocarpus subulatus male Bft15bexonScaffold_373 545860..546072 -
EsuBft1013_4a-0001-exonagat-exon-63023Ectocarpus subulatus male Bft15bexonScaffold_373 546307..546372 -
EsuBft1013_4a-0001-exonagat-exon-63026Ectocarpus subulatus male Bft15bexonScaffold_373 547209..547334 -
EsuBft1013_4a-0001-exonEsuBft1013_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 547851..548036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_4a-0001-cdsEsuBft1013_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 545431..545646 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1013_4a-0001 ID=EsuBft1013_4a-0001|Name=EsuBft1013_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=807bp|location=Sequence derived from alignment at Scaffold_373:545431..548036- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGATGGGAAGGGGGAGGACATGGTGGTACACGTTGGTAGTGGC
GAAGGTGAAGCTGGCGGTGACACCATTGCCTCGGGTAATGGCGCAGCTCC
TGGATGCTCGGCCGATGACGCGCCCGCGGCTGCGGAAGGTCCAGGTCCAG
GTCCAGGTCCAGGTCCAGGTCCAGGTCCAGGTCCAGGCACAGAGCAGGGG
GAAGCTCAACAGATGGATTTGTGTGTGGATCACTTGCGTCCACCACGGGG
AGCCGAGAAGACGTGAACGTGTTGCGAACGAGGAGGATCGCAAGAACACC
TCTTCGTCCAAGCTGGGCTGCAACTTCAAAACGGTGCTGTGGTGGTCGGC
CAACAGTGATGCACCAGTCGTTGCACAGGGAGGCATGTGCCTCACGCACC
ACACGCCAAGTTCAGACGAAAAGGAGCACGCGCGCCCAAGAACTTTCGAC
AACGAGATGTCTCGCGAGGACATGGAGCAGATGTCCGACTTCATCATCGA
CCTTGCTGATGCAGGCGTGAAGACGGTAGATCTCCACAAGACTGTTCAGC
AGAAGAGCGGGAAGAGGCTGGGCGTTGAAGGGAAAGCGGTGGTGCGATCC
GTTGTTGAAAGGCATCGAAAGGCCTCTCGTGAAGCCTTCAACGACGCCCA
GGAGTTCCTGATGCACGTGCAGCGAACCAAGGCTCACTTGTGGTTCAGGG
CAGACGACGAGGCCCGCATCACGAGCATCGCTTGGGCGTCTGACGTGCAG
AAGGCTACCGCGGTGCGCTTCCACTCTGTCATCATCACGGACACGACGTT
CAACNAG
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protein sequence of EsuBft1013_4a-0001

>EsuBft1013_4 ID=EsuBft1013_4|Name=EsuBft1013_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=269bp
MVLMGRGRTWWYTLVVAKVKLAVTPLPRVMAQLLDARPMTRPRLRKVQVQ
VQVQVQVQVQVQAQSRGKLNRWICVWITCVHHGEPRRRERVANEEDRKNT
SSSKLGCNFKTVLWWSANSDAPVVAQGGMCLTHHTPSSDEKEHARPRTFD
NEMSREDMEQMSDFIIDLADAGVKTVDLHKTVQQKSGKRLGVEGKAVVRS
VVERHRKASREAFNDAQEFLMHVQRTKAHLWFRADDEARITSIAWASDVQ
KATAVRFHSVIITDTTFNX
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mRNA from alignment at Scaffold_373:545431..548036-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1013_4a-0001 ID=EsuBft1013_4a-0001|Name=EsuBft1013_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2606bp|location=Sequence derived from alignment at Scaffold_373:545431..548036- (Ectocarpus subulatus male Bft15b)
ATGGTGCTGATGGGAAGGGGGAGGACATGGTGGTACACGTTGGTAGTGGC
GAAGGTGAAGCTGGCGGTGACACCATTGCCTCGGGTAATGGCGCAGCTCC
TGGATGCTCGGCCGATGACGCGCCCGCGGCTGCGGAAGGTCCAGGTCCAG
GTCCAGGTCCAGGTCCAGGTCCAGGTCCAGGTCCAGGTCCAGCTCCGGCC
GGCGATGCAGCCCTAGACCCTCAATGTGCCACACTTGACCACCCGGATTC
ATGCGACGTGGACCTGTGCAGGGGAGATAGCGGCGATTGAACAGCAGGTC
AGGGAGTTGATTTTCCCCAACTTAAGAAGACGGGACCGGCGAATATGGCG
AGAAGACCCTGAACAACGCCGTGGAGATGGTGAAAGATTTGCCCGGATTC
ACCCGCGGCTTCGAAGTGACGAGAGTTAGCAAAAGCAGGGTAAGACCTAC
TTGGCATACATTGGGTTTTCGATCGCAGCAGCGCTTCGCTGGCGTACATG
CTGTTGTACTTGCTACGTGGGCGTACGGGATGGTGCTTTGGTGATAATAT
GTATGCGAGTTCTGTTTGGCACGCTCGTTTTTTTCGGGTTGTCCAATGTG
ACAAGTGACTGCGCACCCTGATACTATCGAGGGCTGACGTATGATGTGTT
GACATGTGATTGTGTCGTCGCCGCCGCCCCCCAGCTCATGACAATCCAAC
AGGCACAGAGCAGGGGGAAGCTCAACAGATGGATTTGTGTGTGGATCACT
TGCGTCCACCACGGGGAGCCGAGAAGACGTGAACGTGTTGCGAACGAGGA
GGATCGCAAGAACACCTCTTCGTCCAAGGTAATACTGGTTGAATATTCGT
GAATACCTGATGAAGGCACCCCTTCGCTTCTTCTGCGCTTCGCTTTCCGT
AGTATAGACTAAATGCGTGCGAGGGGCGGAAGCACCACCAGTGGCTTTCC
GTTCGAGGGCGATTGCGTGCGCTTGTTTCTTTGCTCGCTGTGCAGTTGCC
TGTGTACGCTGTGACGTCCAAATTTTTCATGCGGTGGTTCGATGCTTTCC
TACACAAATTCTGTCGATCATGTCAGCCGGTACGGCCGCCGAAATTGCCG
AGATATTTTGCCAGTACGGCGTAGTGTAGGATTTTTCGCACGGCCCGTGC
AAGTTTCCTTGCACGTTTCACGCGCTGCAATACGACCTTTTCATCCGGCA
GTTTATTCGATAAAGGCTGACCATTTGACTACGTGCATAGTCATCGATGA
CTGTGCACGTAGTCAAATGGTCAGCCTTTATCCAATAAAAGATCTTTTAT
TGGATAAAGGCTGACCATTTGACTACGTGCACAGTCATCGATGACTGTGC
ACGTAGTCAAATGGTCAGCCTTTATCCAATACAGTTTACTACTGTCGCGG
GACGCATAGGGAAGTCGCATGTTGGGTTGTGTTCCACGGCGAGAAGAGCG
CAGGAAAACAAGGCAGAGTGTCCAAATACGCGGCAGGCGCCTGTTGTTTT
TGGGATATTTCGTTTCGGCGAAGAAACGCCACATCGGGAGTTTGTCTGTT
TCTGAACGTCGGGAAAAGCACCGAAAGCACAACAACGGTCTCCGTTTTCC
ACGCGTACAAGCATGCTGGTTTCCCCATCTTCGTTGCGCTCATCCCCCCG
CGTGCGAATCCTAGCTGGGCTGCAACTTCAAAACGGTGCTGTGGTGGTCG
GCCAACAGTGATGCACCAGTCGTTGCACAGGTGAGCTCATCAACGTTGGC
GGGAGGAAATCGACTCGTGACCATACGGTACCGTCGAGTTGATGTGCTGA
GGTCGACAGGCGCCAGAGCCTACCTCAAGTAGGATTCCTCCACGGGTTGA
CTGTGGTGTCTGGGGTGTGGGACGAGGGCGGTGAGCTTTAGGTTCGTACG
TATGATGTGCGTTCTGTTGACATTCCGCACTCGTTCGTTTGTCTCGCGAC
GCCCCGTGGCGCAGGGAGGCATGTGCCTCACGCACCACACGCCAAGTTCA
GACGAAAAGGAGCACGCGCGCCCAAGAACTTTCGACAACGAGATGTCTCG
CGAGGACATGGAGCAGATGTCCGACTTCATCATCGACCTTGCTGATGCAG
GCGTGAAGACGGTAGATCTCCACAAGACTGTTCAGCAGAAGAGCGGGAAG
AGGCTGGGCGTTGAAGGGAAAGCGGTGGTGAGTGTCCAGTTGGCGTAGAC
GGGACTTAGAGCGAGAACAGGGCCGACGACAGAACTCAACGAACCGGCGG
CTGCCCGTTGAAGTCCTCCTTGTTGCATCACGACGATGTCGGCATGATAT
CTTGAGCGTGCTTCTGCCCGGACTAAGCCGTTGAAGTGCTCATACCAAAT
TCATGTCCCCTCTTGGATGGTGCATGCATGTCGACGGCAGGTGCGATCCG
TTGTTGAAAGGCATCGAAAGGCCTCTCGTGAAGCCTTCAACGACGCCCAG
GAGTTCCTGATGCACGTGCAGCGAACCAAGGCTCACTTGTGGTTCAGGGC
AGACGACGAGGCCCGCATCACGAGCATCGCTTGGGCGTCTGACGTGCAGA
AGGCTACCGCGGTGCGCTTCCACTCTGTCATCATCACGGACACGACGTTC
AACNAG
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Coding sequence (CDS) from alignment at Scaffold_373:545431..548036-

>EsuBft1013_4a-0001 ID=EsuBft1013_4a-0001|Name=EsuBft1013_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=807bp|location=Sequence derived from alignment at Scaffold_373:545431..548036- (Ectocarpus subulatus male Bft15b)
ATGGTGCTGATGGGAAGGGGGAGGACATGGTGGTACACGTTGGTAGTGGC
GAAGGTGAAGCTGGCGGTGACACCATTGCCTCGGGTAATGGCGCAGCTCC
TGGATGCTCGGCCGATGACGCGCCCGCGGCTGCGGAAGGTCCAGGTCCAG
GTCCAGGTCCAGGTCCAGGTCCAGGTCCAGGTCCAGGCACAGAGCAGGGG
GAAGCTCAACAGATGGATTTGTGTGTGGATCACTTGCGTCCACCACGGGG
AGCCGAGAAGACGTGAACGTGTTGCGAACGAGGAGGATCGCAAGAACACC
TCTTCGTCCAAGCTGGGCTGCAACTTCAAAACGGTGCTGTGGTGGTCGGC
CAACAGTGATGCACCAGTCGTTGCACAGGGAGGCATGTGCCTCACGCACC
ACACGCCAAGTTCAGACGAAAAGGAGCACGCGCGCCCAAGAACTTTCGAC
AACGAGATGTCTCGCGAGGACATGGAGCAGATGTCCGACTTCATCATCGA
CCTTGCTGATGCAGGCGTGAAGACGGTAGATCTCCACAAGACTGTTCAGC
AGAAGAGCGGGAAGAGGCTGGGCGTTGAAGGGAAAGCGGTGGTGCGATCC
GTTGTTGAAAGGCATCGAAAGGCCTCTCGTGAAGCCTTCAACGACGCCCA
GGAGTTCCTGATGCACGTGCAGCGAACCAAGGCTCACTTGTGGTTCAGGG
CAGACGACGAGGCCCGCATCACGAGCATCGCTTGGGCGTCTGACGTGCAG
AAGGCTACCGCGGTGCGCTTCCACTCTGTCATCATCACGGACACGACGTT
CAACNAG
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