EsuBft1013_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1013_2a-0001
Unique Name	EsuBft1013_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_373	contig	Scaffold_373:537237..539100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FI08
ProteomeId	EsuBft1013_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	43
Hectar predicted targeting category	other localisation
Evalue	3.43e-64
EggNOG OGs	2DCSR@1\|root,2S5KN@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_2a	EsuBft1013_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_373 537237..539100 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_2a-0001-exon	EsuBft1013_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 537237..537252 +
EsuBft1013_2a-0001-exon	agat-exon-63022	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 538685..539100 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_2a-0001-cds	EsuBft1013_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_373 537237..537252 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1013_2a-0001	EsuBft1013_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_373 537237..539100 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:537237..539100+
coding sequence from alignment at Scaffold_373:537237..539100+

spliced messenger RNA

>EsuBft1013_2a-0001 ID=EsuBft1013_2a-0001|Name=EsuBft1013_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=432bp|location=Sequence derived from alignment at Scaffold_373:537237..539100+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAAAAAATAGGCACGTCTCAAACCCAGACCGATGAGCTAGCTCT
TCTCGACGACGACGACAGCATGGACCCACAAGACCCGGAGGACGAGACAC
AAGGAATGGAGATCCCGACAGGCTTTCGCATTCAAGAAGTTAAACCCGTT
GCTCTTGACAGATTGCTTTTTCGACGTGGAGTGCTCGTCAGGCTAGGGAT
GGGGTGGTTTGGAGGGTTGATCATTCAGCAATCTCAGCAGGACACTCGCC
ACCTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTACGCGCAAG
ATGAAGCTGCTCTTAGACGAGTACACCGGAGATCCGGATGCGGCGGTAGG
CTCCTGGGTTTTGCTTGAGAGCGTTAGTAGATCGGGGAGGGTACGTAGGA
CCAAGGTCACCCTTGTGGACCACGATGATTGA

protein sequence of EsuBft1013_2a-0001

>EsuBft1013_2 ID=EsuBft1013_2|Name=EsuBft1013_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=143bp
MQKKIGTSQTQTDELALLDDDDSMDPQDPEDETQGMEIPTGFRIQEVKPV
ALDRLLFRRGVLVRLGMGWFGGLIIQQSQQDTRHLYDYCVQLELDQSTRK
MKLLLDEYTGDPDAAVGSWVLLESVSRSGRVRRTKVTLVDHDD

mRNA from alignment at Scaffold_373:537237..539100+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1013_2a-0001 ID=EsuBft1013_2a-0001|Name=EsuBft1013_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1864bp|location=Sequence derived from alignment at Scaffold_373:537237..539100+ (Ectocarpus subulatus male Bft15b)
ATGCAAAAAAAAATAGGTGAGTTCATTAGTCTAATGTGACCCAAACGAAA
CAGACGTCACCTCCCCACTCGCTCGTGTGATTCACGATAATCTTTTCAAG
GAAATATCCGTTCAGAGTGCATAGATACTTTTGCCAGCGGCATCCACGGA
AGTTTGAATTCAACAGCGCCACAACTAAGAGCGACTGACACGTCACATGG
CTCGCTGAATCCCCTACACGGCAATTCCGCCCTTTCCCATCGCACCGAGC
AGATTGAGCGGACTCGTGGTGGAGTGAAAGAGTTCGTATCCGGTATCAGC
TTCCCGCCTCCGGCCCCGGAGTCCCGCCGATCCTGCCCTCNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTCATTTCCTT
GTTGATGACGATGTCCACGTTGATATTTGCTTGGAATTGCTGATGTGCTG
TTTCCGCGTTCACGACTACGAGCAAATATGATAGGTTCATATTGAGTTTC
GCCGCGACACCGTACTTCTTGTGGTGTTTCACGGTGCCCCGTTCGCAGGC
ACGTCTCAAACCCAGACCGATGAGCTAGCTCTTCTCGACGACGACGACAG
CATGGACCCACAAGACCCGGAGGACGAGACACAAGGAATGGAGATCCCGA
CAGGCTTTCGCATTCAAGAAGTTAAACCCGTTGCTCTTGACAGATTGCTT
TTTCGACGTGGAGTGCTCGTCAGGCTAGGGATGGGGTGGTTTGGAGGGTT
GATCATTCAGCAATCTCAGCAGGACACTCGCCACCTGTACGACTACTGTG
TGCAGCTGGAGCTAGACCAGAGTACGCGCAAGATGAAGCTGCTCTTAGAC
GAGTACACCGGAGATCCGGATGCGGCGGTAGGCTCCTGGGTTTTGCTTGA
GAGCGTTAGTAGATCGGGGAGGGTACGTAGGACCAAGGTCACCCTTGTGG
ACCACGATGATTGA

Coding sequence (CDS) from alignment at Scaffold_373:537237..539100+

>EsuBft1013_2a-0001 ID=EsuBft1013_2a-0001|Name=EsuBft1013_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=432bp|location=Sequence derived from alignment at Scaffold_373:537237..539100+ (Ectocarpus subulatus male Bft15b)
ATGCAAAAAAAAATAGGCACGTCTCAAACCCAGACCGATGAGCTAGCTCT
TCTCGACGACGACGACAGCATGGACCCACAAGACCCGGAGGACGAGACAC
AAGGAATGGAGATCCCGACAGGCTTTCGCATTCAAGAAGTTAAACCCGTT
GCTCTTGACAGATTGCTTTTTCGACGTGGAGTGCTCGTCAGGCTAGGGAT
GGGGTGGTTTGGAGGGTTGATCATTCAGCAATCTCAGCAGGACACTCGCC
ACCTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTACGCGCAAG
ATGAAGCTGCTCTTAGACGAGTACACCGGAGATCCGGATGCGGCGGTAGG
CTCCTGGGTTTTGCTTGAGAGCGTTAGTAGATCGGGGAGGGTACGTAGGA
CCAAGGTCACCCTTGTGGACCACGATGATTGA