EsuBft1013_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1013_14a-0001
Unique NameEsuBft1013_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:627650..628803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1013_14
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length89
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_14aEsuBft1013_14aEctocarpus subulatus male Bft15bgeneScaffold_373 627650..628803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_14a-0001-exonEsuBft1013_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 627650..628528 -
EsuBft1013_14a-0001-exonagat-exon-63062Ectocarpus subulatus male Bft15bexonScaffold_373 628788..628803 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_14a-0001-exonagat-three_prime_utr-143Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 627650..628442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_14a-0001-cdsEsuBft1013_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 628443..628528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_14a-0001EsuBft1013_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 628443..628803 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1013_14a-0001 ID=EsuBft1013_14a-0001|Name=EsuBft1013_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=895bp|location=Sequence derived from alignment at Scaffold_373:627650..628803- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAATGCCCAGGGCGTTGCTGGGGGCCCCGTATGGCTGCTTTCTTC
GTTTTTTCCGACCAAAAAACTCCCCATCTGCGCGCCCCCAAAACACGCTT
AGCCATAGGGTTTGACAGAAACCTTGCAATAGCTCCCGCTGTAGTGCTGA
TCCGAATTTTTACCAGGGTGTTTTCGGCACCTAACACCCCAATAAGCACA
CCCTCCGAGTATCGTGCGATTCGAGCAACTCTACGAGGTAGTAACTTTGG
CGTGAAGCTCCGTGCGGGGGTGTGGTATCTTCCGTTGTCGGGTGCACCGC
TCCATCTTGGTCCGCTGGAGAGAACGTCCTGAACGCCGTCCGTGGGCCAG
AAGCTGGATCTCTTGGCTGCAGGTGGGTGGGAGACATGGAGGCAGTACTA
GGGGAGTAGGTGTCAGAGTGATTTCAACGCCAGGGGCTTCCAGGGTCGTG
GATTTGTGCTGTTCGGTGGCGTCCGCACCCTTCATGTGTCCGCGCGCAAC
AGCACCCTGACACCCTCGCTGCTGCTGTTGTATGGGTCGCAACTTTGGGC
CGGGCACCCCGAGTGCTGATATGTGACAAGCACGAGAGTTATTCCTATCC
AACATGCTCACAGCAGAACTTTGTGCGCCAACAACGCCGATCAAAGTAGC
ATGAATTTTTTGAATTTGAATTATTTTCAACGGTCGTTGGTACGCTGCTG
GCACCTGTGTAGCCGTACAGCAGTAGCACATAGAGCAATTGCGACGCACG
CCCCAGTCTACCGTGCACTATGGATGTAGCTGTTCATCGCTGTCTCCAGT
ACCAGGCGTTTAGTCGTTTTCGGCAACTCATGAAGAGATACAGCAGACAC
GTAGACACGTAGACTAGTTGTCAAAAAAACGTCGCGTGTAGTTTT
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protein sequence of EsuBft1013_14a-0001

>EsuBft1013_14 ID=EsuBft1013_14|Name=EsuBft1013_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=33bp
MRNAQGVAGGPVWLLSSFFPTKKLPICAPPKHA
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mRNA from alignment at Scaffold_373:627650..628803-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1013_14a-0001 ID=EsuBft1013_14a-0001|Name=EsuBft1013_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1154bp|location=Sequence derived from alignment at Scaffold_373:627650..628803- (Ectocarpus subulatus male Bft15b)
ATGCGAAATGCCCAGGGTTCATATCCCTACTCCTTCACGTTTCGAACCGG
TTGTTCTAGTTGATAACCTCGACACCTTTTAGAGTTCATCATAGAGGTCA
GGTCAGGGGTTCGAATTAGGCGTAAGCGAGCTTATCTTACGAAGTGAGTT
TTGTTGACCACTCCTAGAGCCGGAGTGATTGCCGGGTATGCCCATATTTG
TGTCCAGTGACTAGAAAGTCTCGTTGATGGCTTGAATTGGATCCGCAGGC
CAAACGCACGACAGACAGAGCACAGGCGTTGCTGGGGGCCCCGTATGGCT
GCTTTCTTCGTTTTTTCCGACCAAAAAACTCCCCATCTGCGCGCCCCCAA
AACACGCTTAGCCATAGGGTTTGACAGAAACCTTGCAATAGCTCCCGCTG
TAGTGCTGATCCGAATTTTTACCAGGGTGTTTTCGGCACCTAACACCCCA
ATAAGCACACCCTCCGAGTATCGTGCGATTCGAGCAACTCTACGAGGTAG
TAACTTTGGCGTGAAGCTCCGTGCGGGGGTGTGGTATCTTCCGTTGTCGG
GTGCACCGCTCCATCTTGGTCCGCTGGAGAGAACGTCCTGAACGCCGTCC
GTGGGCCAGAAGCTGGATCTCTTGGCTGCAGGTGGGTGGGAGACATGGAG
GCAGTACTAGGGGAGTAGGTGTCAGAGTGATTTCAACGCCAGGGGCTTCC
AGGGTCGTGGATTTGTGCTGTTCGGTGGCGTCCGCACCCTTCATGTGTCC
GCGCGCAACAGCACCCTGACACCCTCGCTGCTGCTGTTGTATGGGTCGCA
ACTTTGGGCCGGGCACCCCGAGTGCTGATATGTGACAAGCACGAGAGTTA
TTCCTATCCAACATGCTCACAGCAGAACTTTGTGCGCCAACAACGCCGAT
CAAAGTAGCATGAATTTTTTGAATTTGAATTATTTTCAACGGTCGTTGGT
ACGCTGCTGGCACCTGTGTAGCCGTACAGCAGTAGCACATAGAGCAATTG
CGACGCACGCCCCAGTCTACCGTGCACTATGGATGTAGCTGTTCATCGCT
GTCTCCAGTACCAGGCGTTTAGTCGTTTTCGGCAACTCATGAAGAGATAC
AGCAGACACGTAGACACGTAGACTAGTTGTCAAAAAAACGTCGCGTGTAG
TTTT
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Coding sequence (CDS) from alignment at Scaffold_373:627650..628803-

>EsuBft1013_14a-0001 ID=EsuBft1013_14a-0001|Name=EsuBft1013_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=102bp|location=Sequence derived from alignment at Scaffold_373:627650..628803- (Ectocarpus subulatus male Bft15b)
ATGCGAAATGCCCAGGGCGTTGCTGGGGGCCCCGTATGGCTGCTTTCTTC
GTTTTTTCCGACCAAAAAACTCCCCATCTGCGCGCCCCCAAAACACGCTT
AG
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