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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D7FIC6 |
ProteomeId | EsuBft1013_11 |
Protein domains | Coil |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 5 |
Max annot lvl | 2880.D7FIC6|- |
Length | 257 |
Hectar predicted targeting category | other localisation |
Evalue | 0.0 |
EggNOG OGs | 2EJXG@1|root,2SPZB@2759|Eukaryota |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1013_11a-0001 ID=EsuBft1013_11a-0001|Name=EsuBft1013_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2578bp|location=Sequence derived from alignment at Scaffold_373:610212..614143- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTTACGGAAAGCGCCACGGCTCGACGTACACACACCGGTCCCGACCAGGC GAGAGACCCGAGGACTCCCACAACAGACGTGATAAACCCACACCATGAAC AACAACGCCGTAGCAGTGGCAGGCCGGCCATCAAGAACGAAAACGGTACC TCTGCGACTGCAGGGTGGAGGTGAAAGTGGTGCAGCTGCTGGGCATGGTG TTGCCCAGATCACGCCTGCTGGCGCCGTGCAGCTCCAGCCGGCACCGAGC GGCATGGTCCGCCAGGCCGTCCACAGCAGGGTTACCCCCCATACCGATAC ACAACAGGGGGTGCCACCTGGTGCGGGGCTGATGCCGGGCCTCATGGACA CTGAAATTACTAAAGCTCGTCGGGTGGCCGTAAGCATGATTCTGAACGAC AAGCAGTTTGGCGAAGCTTCAGGGAAGAATTGGAGCGAATCGGACAGCAG CGACGACGACAACGGGAAGGACGCTCCGATGTCAAGTGGCAGCAGCAATG TGTCGGTAGAGGAGAGTTCAGCTCCGTCGGACATAGGCTCACAGGAGCCT GGAGATGTCGAGTCCGGAGATAGCGTGTTCGCAAAGGAAATACGGGAAGC AATATTCGGGGGAGGGGGAGCGGGCAGAAAAAAAAACCATGGCAAGCGGA AGGCGAGCGCCGGCGGCAGCGCCGTAGGGAACAGGAACTCAACAAAGGCA AGCCTAGGAGCGAGTGCCAAGAAAGCCCGGGGCAAGGACTACCCGCTCTG GGCCGCACATCTGCTGAGGAGGACATGCGCGCACCGCAAGATCCCGAGGA TGTCGAAGGAGGGCGACAAGCATGTCCTGGTGCAGGCCCTGCGATCTCAC GACGGCAACATGAACCGGCCATCTCCGTACTATGACGACCTCAATGCTAT CACAGCCGGTAACATGAGGAATATGGAGTTTTGCTCCGGTTGGGGGTGTA CACCCGAGGCGTCCTCTCATGCGAAGGCTTATTCGTTGTGTGGGCCGCTT TCTCCTATCCCCAATGCTCGCGCAGGCAAATCTGGACGCAGCAACGGGGA GGAGGACGAGGAGGAGGGAGCCATCCCTGCCAAAGCACTCCTTACGTTTC GAAATGTTGTCGGGATGGTCGCCATAGCACGTGACAGTAAAGTGCCGTTT AAAGTCGATAATGTGGAGTACAGTGCGGTGGACCTTTACGACGCCCTGGC CAAGGAAGACGAAGCGGGAACGGGGGATTCTGCGGGCGGGAGTGCTTCCA CTGGTGGTTCATCGACGGGTGGTGCAGCCGGACCGGACGGGGATGGTTCC GTCGGAGGGAGCGGCAGCAACACGGAGCGCAAGGGCCCACACTGCATGAT GCGGCTCGTTGGGATCCTGTGCGAAGACGCCATCCGCCCACTTCTCATAG AGAGCCGCTTGCAGGCGACCCGGCAGGACCTGGACACGTCATCAGTCGGG CCGCGGAACGATTTGTGGACAGAGGTCACCACGCGCTTCCGAGACCCTGA CCACCAGGTGAGAAAAATCGTGGACGACGAGCAAGTGTCTCACGTCGACC CGAACATCATCCAGCAACCAAACATCTCCGCGGAGAAGCTTTCCAGGATG TGGGCTACGGCAAAGGCGAAGTGGAACCAGCCTTATGCCAACTGGAAGAG TGAATCCGGCAACAACCAGCCATGGCTTTCATTTTGTCAAGGGTGCACGG ACACGTATGTTCTCGGTTGCGCAATCGAGAAATACCCCGAGCTGAACCAA GTGTGCAACAATCTCCTCCCCGAGGGCGCTCAGCGAGAGGACGACGGGAC CGGAGAGGGTATTGTCTGCACAGGCGGTGCCGACCGCCGGGCTGCCGCCA AGCGGGAGGGCGCCAGGCTCAACGAGCAGAACAGGCGGGGAAAAAAGCCA AAAAATAAGGGGGTGGGGCAAAGCGTGGCAGAGGCTACGTCCGCTGCCAT GAAAACCGCACTCAAAGATATTGAGCCACTGCTGGAAAAGGTTGGCGGAT CAGAAAAATCAGAGTGGTACAAAAAAAAAGAGGAACACGCTTGCAAGACT GCTGAACACGACAGCAAGGCTTCTGGCCTCGCCCTCCAGAAGGAAATGAC CGAGTCCCACGCCGAATTCTCGAAGAAAATTGTGGAGGAGGAGAAAGAAA AAGCAGAGGGTTATCAGACGAGAGTTAGATTCCTGCGCAAAATGTTGGCC GGCATCGAGAAGGAAATGTTTGGCGACGAATAACACCCATATGCACTCCC GGAAGAGTGTTACCGTGCAATCGTCGAATTTTATGCATGCTCAACGTCTT CGTTTCGTCGCAGCATTGAGGATACGTGCGCCTCCGCATAGACGTGTGGG TTTGGTAGGCAACAACACTTTGAGAGGATGCTTTACGGCAACAAAGGAGT ATCAACAAAATAAATATAGTGGAAGAAAGCCGAGACCGTTGTGGTTCACG GGCAAGTTGCTGTGACTGTATTCAACGAACACGAGGATGCGTTTTTTTAT TTCTCTCCCTGCTGCAGGGCTTGCTTGCTGCGAGGGTCGTAGCCTTCTTT TTTTTTTGGGCCAGGGGGGGGGGAGGTT back to topprotein sequence of EsuBft1013_11a-0001 >EsuBft1013_11 ID=EsuBft1013_11|Name=EsuBft1013_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=712bp
MNNNAVAVAGRPSRTKTVPLRLQGGGESGAAAGHGVAQITPAGAVQLQPA PSGMVRQAVHSRVTPHTDTQQGVPPGAGLMPGLMDTEITKARRVAVSMIL NDKQFGEASGKNWSESDSSDDDNGKDAPMSSGSSNVSVEESSAPSDIGSQ EPGDVESGDSVFAKEIREAIFGGGGAGRKKNHGKRKASAGGSAVGNRNST KASLGASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQALR SHDGNMNRPSPYYDDLNAITAGNMRNMEFCSGWGCTPEASSHAKAYSLCG PLSPIPNARAGKSGRSNGEEDEEEGAIPAKALLTFRNVVGMVAIARDSKV PFKVDNVEYSAVDLYDALAKEDEAGTGDSAGGSASTGGSSTGGAAGPDGD GSVGGSGSNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSS VGPRNDLWTEVTTRFRDPDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLS RMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPEL NQVCNNLLPEGAQREDDGTGEGIVCTGGADRRAAAKREGARLNEQNRRGK KPKNKGVGQSVAEATSAAMKTALKDIEPLLEKVGGSEKSEWYKKKEEHAC KTAEHDSKASGLALQKEMTESHAEFSKKIVEEEKEKAEGYQTRVRFLRKM LAGIEKEMFGDE back to topmRNA from alignment at Scaffold_373:610212..614143- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1013_11a-0001 ID=EsuBft1013_11a-0001|Name=EsuBft1013_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3932bp|location=Sequence derived from alignment at Scaffold_373:610212..614143- (Ectocarpus subulatus male Bft15b) TTTACGGAAAGCGCCACGGCTCGACGTACACACACCGGTCCCGACCAGGC
GAGAGACCCGAGGACTCCCACAACAGACGTGATAAACCCACACCATGAAC
AACAACGCCGTAGCAGTGGCAGGCCGGCCATCAAGAACGAAAACGGTACC
TCTGCGACTGCAGGGTGGAGGTGAAAGTGGTGCAGCTGCTGGGCATGGTG
TTGCCCAGATCACGCCTGCTGGCGCCGTGCAGCTCCAGCCGGCACCGAGC
GGCATGGTCCGCCAGGCCGTCCACAGCAGGGTTACCCCCCATACCGATAC
ACAACAGGGGGTGCCACCTGGTGCGGGGCTGATGCCGGGCCTCATGGACA
CTGAAATTACTAAAGCTCGTCGGGTGGCCGTAAGCATGATTCTGAACGAC
AAGCAGTTTGGCGAAGCTTCAGGGAAGAATTGGAGCGAATCGGACAGCAG
CGACGACGACAACGGGAAGGACGCTCCGATGTCAAGTGGCAGCAGCAATG
TGTCGGTAGAGGAGAGTTCAGCTCCGTCGGACATAGGCTCACAGGAGCCT
GGAGATGTCGAGTCCGGAGATAGCGTGTTCGCAAAGGAAATACGGGAAGC
AATATTCGGGGGAGGGGGAGCGGGCAGAAAAAAAAACCATGGCAAGCGGA
AGGCGAGCGCCGGCGGCAGCGCCGTAGGGAACAGGAACTCAACAAAGGCA
AGCCTAGGAGCGAGTGCCAAGAAAGCCCGGGGCAAGGACTACCCGCTCTG
GGCCGCACATCTGCTGAGGAGGACATGCGCGCACCGCAAGATCCCGAGGA
TGTCGAAGGAGGGCGACAAGCATGTCCTGGTGCAGGCCCTGCGATCTCAC
GACGGCAACATGAACCGGCCATCTCCGTACTATGACGACCTCAATGCTAT
CACAGCCGGTGAGATGCTGGTATTGTGTAGATTCGTCGTCGATGAGAGTC
ACAGCAGACGGCACAGAGTTTTGAGTAAAATTATAGGTAAGTATGCTGCA
GTTGAACGCAGTGTGCGTTAAGGTTACAAAACAAAATTACTGCTTTGTGT
TTATGTAGAATGCCCGCTTCAAATCGACCTGTTCGTACAGTAGAAGGTAC
GGCATGCTCGAGAGCTGTTTTATTTGCCTCAGTAAGTGGGAAAATAAAGG
CACGCACAGCGTACTACCAGGCATGCTTTGTTGACGACAACCGGTGGTGC
ACGGACCTAAACGCTTAAGCTTTGTGTGTTCTGTCCTCTCACGCTCAGAG
GAATGTCTAGAGTTGAACGATTTTTTGTGGAATACAGCATGAGGAATATG
GAGTTTTGCTCCGGTTGGGGGTGTACACCCGAGGCGTCCTCTCATGCGAA
GGCTTATTCGTTGTGTGGGCCGCTTTCTCCTATCCCCAATGCTCGCGCAG
GCAAATCTGGACGCAGCAACGGGGAGGAGGACGAGGAGGAGGGAGCCATC
CCTGCCAAAGCACTCCTTACGTTTCGAAATGTTGTCGGGATGGTCGCCAT
AGCACGTGACAGTAAAGTGCCGTTTAAAGTCGATAATGTGGAGTACAGTG
CGGTGGACCTTTACGACGCCCTGGCCAAGGAAGACGAAGCGGGAACGGGG
GATTCTGCGGGCGGGAGTGCTTCCACTGGTGGTTCATCGACGGGTGGTGC
AGCCGGACCGGACGGGGATGGTTCCGTCGGAGGGAGCGGCAGCAACACGG
AGCGCAAGGGCCCACACTGCATGATGCGGCTCGTTGGGATCCTGTGCGAA
GACGCCATCCGCCCACTTCTCATAGAGAGCCGCTTGCAGGCGACCCGGCA
GGACCTGGACACGTCATCAGTCGGGCCGCGGAACGATTTGTGGACAGAGG
TCACCACGCGCTTCCGAGACCCTGACCACCAGGTACACGGTCATGGGTAG
GGGATTGATTAGGACGGATCGGCCGAGAACGTTGTACATAGACAGCAGTC
GATATGTATGTTGACACGCATGCCTTTTTTTAGTGGTCATTTTAGCCATC
GTACTCAACACCTCATGACGTCCACGGACGATCGCCATTGTTTTAGGTAA
AAACCCATGAGGTATCCACCCCCAAGAGCGGGTCAACCTGCTGTTGACGT
ACACCGGTAACTTATGGTGTTGTTGCTGACGCCGACGCCGATCATACTGC
TGTAGTTGCTTCGAAACCTTCACCTATTGGTGGAAGACTTAGAAAACGCG
CAGAAGAATTCCACAGGAGTGCATAGCCAAACAATATTACACGACAGAAA
AAAATAACACTGCAGAAGCAACGCTAAAATACAGGCCGGGATCAGGCCGA
CAGTACTAAGCTTCCCACGAGAGGTGCATTCCCCGTTCGGTATGTTGTTT
TTCTTCGTATCAAAATCGTGTTAAATTCCTCGCACGCCCGGGGGGGCGGT
ACTCTATGTAAGTTTTTTTAAAGAACACGTGTATGATCTGCGCTGCCCGC
TCCCTCGCTCTCTCGCTGTATGCATGCCCCATATATGGGTGATGTGGACG
TTTTGCAGGTGAGAAAAATCGTGGACGACGAGCAAGTGTCTCACGTCGAC
CCGAACATCATCCAGCAACCAAACATCTCCGCGGAGAAGCTTTCCAGGAT
GTGGGCTACGGCAAAGGCGAAGTGGAACCAGCCTTATGCCAACTGGAAGA
GTGAATCCGGCAACAACCAGCCATGGCTTTCATTTTGTCAAGGTAAGGGA
TGGGTGGAGTGGGGCTGGGTACAAAATAGCGTCTGTTTGCTCGAGGAACC
TTGGGCGATTTTGTGGTCGTGGCATAAATTCCGCCCATCCTCCTTCACAG
CGTGCAAGTGCTGCTACGGTCGGAGTTTTGAAGTTATACTTGGAGTTCTC
GACAGTGTTGTAAACCGTGCTCCAGGAATGACGTTGGCATTGAGGCCTGA
TGGTGTATTTTGAAGCACGACCAAAGACCATACCAATTGGTCCAAAAAAC
ACTCCCGCCCGCGCCTTGCATTTTTTTTTTGTTTTACAGGGTGCACGGAC
ACGTATGTTCTCGGTTGCGCAATCGAGAAATACCCCGAGCTGAACCAAGT
GTGCAACAATCTCCTCCCCGAGGGCGCTCAGCGAGAGGACGACGGGACCG
GAGAGGGTATTGTCTGCACAGGCGGTGCCGACCGCCGGGCTGCCGCCAAG
CGGGAGGGCGCCAGGCTCAACGAGCAGAACAGGCGGGGAAAAAAGCCAAA
AAATAAGGGGGTGGGGCAAAGCGTGGCAGAGGCTACGTCCGCTGCCATGA
AAACCGCACTCAAAGATATTGAGCCACTGCTGGAAAAGGTTGGCGGATCA
GAAAAATCAGAGTGGTACAAAAAAAAAGAGGAACACGCTTGCAAGACTGC
TGAACACGACAGCAAGGCTTCTGGCCTCGCCCTCCAGAAGGAAATGACCG
AGTCCCACGCCGAATTCTCGAAGAAAATTGTGGAGGAGGAGAAAGAAAAA
GCAGAGGGTTATCAGACGAGAGTTAGATTCCTGCGCAAAATGTTGGCCGG
CATCGAGAAGGAAATGTTTGGCGACGAATAACACCCATATGCACTCCCGG
AAGAGTGTTACCGTGCAATCGTCGAATTTTATGCATGCGTGACGGGGCGG
GGGGCGGGGGGGTAGTTTCATTTTTATCGTTGGGCATGGTTGAGTCAACG
TCTTCGTTTCGTCGCAGCATTGAGGATACGTGCGCCTCCGCATAGACGTG
TGGGTTTGGTAGGCAACAACACTTTGAGAGGATGCTTTACGGCAACAAAG
GAGTATCAACAAAATAAATATAGTGGAAGAAAGCCGAGACCGTTGTGGTT
CACGGGCAAGTTGCTGTGACTGTATTCAACGAACACGAGGATGCGTTTTT
TTATTTCTCTCCCTGCTGCAGGGCTTGCTTGCTGCGAGGGTCGTAGCCTT
CTTTTTTTTTTGGGCCAGGGGGGGGGGAGGTT back to topCoding sequence (CDS) from alignment at Scaffold_373:610212..614143- >EsuBft1013_11a-0001 ID=EsuBft1013_11a-0001|Name=EsuBft1013_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2139bp|location=Sequence derived from alignment at Scaffold_373:610212..614143- (Ectocarpus subulatus male Bft15b) ATGAACAACAACGCCGTAGCAGTGGCAGGCCGGCCATCAAGAACGAAAAC GGTACCTCTGCGACTGCAGGGTGGAGGTGAAAGTGGTGCAGCTGCTGGGC ATGGTGTTGCCCAGATCACGCCTGCTGGCGCCGTGCAGCTCCAGCCGGCA CCGAGCGGCATGGTCCGCCAGGCCGTCCACAGCAGGGTTACCCCCCATAC CGATACACAACAGGGGGTGCCACCTGGTGCGGGGCTGATGCCGGGCCTCA TGGACACTGAAATTACTAAAGCTCGTCGGGTGGCCGTAAGCATGATTCTG AACGACAAGCAGTTTGGCGAAGCTTCAGGGAAGAATTGGAGCGAATCGGA CAGCAGCGACGACGACAACGGGAAGGACGCTCCGATGTCAAGTGGCAGCA GCAATGTGTCGGTAGAGGAGAGTTCAGCTCCGTCGGACATAGGCTCACAG GAGCCTGGAGATGTCGAGTCCGGAGATAGCGTGTTCGCAAAGGAAATACG GGAAGCAATATTCGGGGGAGGGGGAGCGGGCAGAAAAAAAAACCATGGCA AGCGGAAGGCGAGCGCCGGCGGCAGCGCCGTAGGGAACAGGAACTCAACA AAGGCAAGCCTAGGAGCGAGTGCCAAGAAAGCCCGGGGCAAGGACTACCC GCTCTGGGCCGCACATCTGCTGAGGAGGACATGCGCGCACCGCAAGATCC CGAGGATGTCGAAGGAGGGCGACAAGCATGTCCTGGTGCAGGCCCTGCGA TCTCACGACGGCAACATGAACCGGCCATCTCCGTACTATGACGACCTCAA TGCTATCACAGCCGGTAACATGAGGAATATGGAGTTTTGCTCCGGTTGGG GGTGTACACCCGAGGCGTCCTCTCATGCGAAGGCTTATTCGTTGTGTGGG CCGCTTTCTCCTATCCCCAATGCTCGCGCAGGCAAATCTGGACGCAGCAA CGGGGAGGAGGACGAGGAGGAGGGAGCCATCCCTGCCAAAGCACTCCTTA CGTTTCGAAATGTTGTCGGGATGGTCGCCATAGCACGTGACAGTAAAGTG CCGTTTAAAGTCGATAATGTGGAGTACAGTGCGGTGGACCTTTACGACGC CCTGGCCAAGGAAGACGAAGCGGGAACGGGGGATTCTGCGGGCGGGAGTG CTTCCACTGGTGGTTCATCGACGGGTGGTGCAGCCGGACCGGACGGGGAT GGTTCCGTCGGAGGGAGCGGCAGCAACACGGAGCGCAAGGGCCCACACTG CATGATGCGGCTCGTTGGGATCCTGTGCGAAGACGCCATCCGCCCACTTC TCATAGAGAGCCGCTTGCAGGCGACCCGGCAGGACCTGGACACGTCATCA GTCGGGCCGCGGAACGATTTGTGGACAGAGGTCACCACGCGCTTCCGAGA CCCTGACCACCAGGTGAGAAAAATCGTGGACGACGAGCAAGTGTCTCACG TCGACCCGAACATCATCCAGCAACCAAACATCTCCGCGGAGAAGCTTTCC AGGATGTGGGCTACGGCAAAGGCGAAGTGGAACCAGCCTTATGCCAACTG GAAGAGTGAATCCGGCAACAACCAGCCATGGCTTTCATTTTGTCAAGGGT GCACGGACACGTATGTTCTCGGTTGCGCAATCGAGAAATACCCCGAGCTG AACCAAGTGTGCAACAATCTCCTCCCCGAGGGCGCTCAGCGAGAGGACGA CGGGACCGGAGAGGGTATTGTCTGCACAGGCGGTGCCGACCGCCGGGCTG CCGCCAAGCGGGAGGGCGCCAGGCTCAACGAGCAGAACAGGCGGGGAAAA AAGCCAAAAAATAAGGGGGTGGGGCAAAGCGTGGCAGAGGCTACGTCCGC TGCCATGAAAACCGCACTCAAAGATATTGAGCCACTGCTGGAAAAGGTTG GCGGATCAGAAAAATCAGAGTGGTACAAAAAAAAAGAGGAACACGCTTGC AAGACTGCTGAACACGACAGCAAGGCTTCTGGCCTCGCCCTCCAGAAGGA AATGACCGAGTCCCACGCCGAATTCTCGAAGAAAATTGTGGAGGAGGAGA AAGAAAAAGCAGAGGGTTATCAGACGAGAGTTAGATTCCTGCGCAAAATG TTGGCCGGCATCGAGAAGGAAATGTTTGGCGACGAATAA back to top
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