EsuBft1012_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1012_9a-0001
Unique Name	EsuBft1012_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_561	contig	Scaffold_561:63509..66428 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1012_9
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	176
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_9a	EsuBft1012_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_561 63509..66428 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_9a-0001-exon	agat-exon-101538	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 63509..64377 +
EsuBft1012_9a-0001-exon	EsuBft1012_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 64683..64794 +
EsuBft1012_9a-0001-exon	agat-exon-101539	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 65641..66428 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_9a-0001-cds	EsuBft1012_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_561 63509..64377 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_9a-0001-exon	agat-three_prime_utr-137	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_561 66130..66428 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_9a-0001	EsuBft1012_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_561 63509..66129 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_561:63509..66428+
coding sequence from alignment at Scaffold_561:63509..66428+

spliced messenger RNA

>EsuBft1012_9a-0001 ID=EsuBft1012_9a-0001|Name=EsuBft1012_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1769bp|location=Sequence derived from alignment at Scaffold_561:63509..66428+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCAGGATGGACCACACCGCCCCCGTCTCCGCAATGGCCGGGGCC
GGGAAAGCTGCCGGCGCCCGCGCCAGGGCCAGAATGGCTGCCGAAGCTCG
TGCCAGGGCCGGAATCGCCGACGGCACTCGCGCCAGGGGCGGGATCGCCA
CCAGCCTTCCCGCCAGGGCCGGGATTGCTGCCGACCCTCGCGCGAGGGCC
AGGATCGTCCGTGCGACTCTTACCTACGCCCCCAACATTACCGCCCAATC
CCATCCGGGAGGAGCAGGCGAACTATGCCGACTGGTTGCTCCCGGCATGT
CAATCGGAGATGAAGAGGCACGCGGAGGCAGCGGGCCACAAGGGAGCCTT
TCGGTACGGTGATGGGGTCGACGAGATCAACACGTCGATTTCGAGCGTGA
AGAAGCCAGAAGCTGTAAAGCTGCTCCTGGCCCAGGACGCGTGGCGTGTA
TCCAAAGGTCTCGACCCTGATTGGAAGCAAGCTCCGCAGGGCACCCCGCA
AGCGAAGAGGGTGGCGAAGGAAGCGAAGGCGAAGCTTGCTGCCGAGGAGG
AAGAGCGCAGGAGGAGATGCCGTTCCAGCGGGGATGCGGCAAGGTTGTGC
TTCATCATGTTCTCGGACGAGATGTACGAGAAGGTCACCACCAGCGAACA
GGCGCCCACGGATCGAAACAAGCGCGACAACCATGCCATTGGGGTGAACG
ATCCAGACGGGGTTTGGGATGAGATAGTTGACCACTTCGTAGACGAAAAT
TTGAGGCTCGGTGGGGTACGCGCTGGCAACCCCAAATCACACGACGGCAG
CACTGCACCCGGAGTGCCTAAGATGTGGGAGGCGCTTCAATCGCTCGACT
ATGACGATCCAGCGAAAAAGTGGAGGGAAGAATGGACGTTCAAGGAAGGG
TCGCGGAAGGGAGAGCTGGACAAGGCTCGCGCCCGCGAGAAGGTGAAAGG
CTGGTGGACGGACATGCGTGCGGAGTTAGGGGACGCTAAGAAGAAGAAAG
AGAAGAGTGGGAACAACGCTGAACACTACTGGTCCTTCTGTAACCAGAAG
CTGTACGTCCTGCTCGTGATGGACTGGTACGAGCTGAGGGGTGGCGACAG
CGCGAACGAGCACTGCGCAAGGTACTTCAGCGTAAGGCTCAGCGAGGAGG
ATGAGGAAGCTTTCAACACTCTGTCCATGGAAGACGAGCAGTCGTCCAGC
GATTCGGATGAACCGCCCGCTCCGAAGGGGAAGCCGCGAGCGCGGAAGGC
GAGGGAGAAGAGGAAGGTCAAACCGGAAGAAACCTTGGTCCAACTTGTGG
ACGCATTCAAGACCACATCAAACAACATTGCAGCGGCGATGAACAAGATT
GCGGACAACGACGCCGAGAATCCCGTGGGTATGTTGATTGCTGCCAGCGA
TCGCCTTGATGACTGTGACGAGATGTTGAAAAATGCGAAAGAAGAAGGAG
CGTCCAAAAGAAAAAATTGACAGGCTCACTCAAAACCTCGCAGTAGCGCA
GGAGGAGTACGACAAAATCTACAAAAAGACCAGGCCTGCTGCAGAGAAAG
CGGCGGAGGAAGAGGAAGAAGATGAGGAAGGGAGTGAAGTTTCGTAGCGA
TTTGTCGTGAAGGCCCTTCGGACGAATCAAACCCGACTTCTTCCAACGAC
GCATGAAGAGGATGTCTTGTCGTTTTGGGTTTGATTCACACGGCATAGGT
TGGGTACATGCATTTTTCTGAGTATGGCTAGTTTTTTTTCCGTTGTGTGC
AGCACGAAGGTAGGGCACT

protein sequence of EsuBft1012_9a-0001

>EsuBft1012_9 ID=EsuBft1012_9|Name=EsuBft1012_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=489bp
MLAGWTTPPPSPQWPGPGKLPAPAPGPEWLPKLVPGPESPTALAPGAGSP
PAFPPGPGLLPTLARGPGSSVRLLPTPPTLPPNPIREEQANYADWLLPAC
QSEMKRHAEAAGHKGAFRYGDGVDEINTSISSVKKPEAVKLLLAQDAWRV
SKGLDPDWKQAPQGTPQAKRVAKEAKAKLAAEEEERRRRCRSSGDAARLC
FIMFSDEMYEKVTTSEQAPTDRNKRDNHAIGVNDPDGVWDEIVDHFVDEN
LRLGGVRAGNPKSHDGSTAPGVPKMWEALQSLDYDDPAKKWREEWTFKEG
SRKGELDKARAREKVKGWWTDMRAELGDAKKKKEKSGNNAEHYWSFCNQK
LYVLLVMDWYELRGGDSANEHCARYFSVRLSEEDEEAFNTLSMEDEQSSS
DSDEPPAPKGKPRARKAREKRKVKPEETLVQLVDAFKTTSNNIAAAMNKI
ADNDAENPVGMLIAASDRLDDCDEMLKNAKEEGASKRKN

mRNA from alignment at Scaffold_561:63509..66428+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1012_9a-0001 ID=EsuBft1012_9a-0001|Name=EsuBft1012_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2920bp|location=Sequence derived from alignment at Scaffold_561:63509..66428+ (Ectocarpus subulatus male Bft15b)
ATGCTTGCAGGATGGACCACACCGCCCCCGTCTCCGCAATGGCCGGGGCC
GGGAAAGCTGCCGGCGCCCGCGCCAGGGCCAGAATGGCTGCCGAAGCTCG
TGCCAGGGCCGGAATCGCCGACGGCACTCGCGCCAGGGGCGGGATCGCCA
CCAGCCTTCCCGCCAGGGCCGGGATTGCTGCCGACCCTCGCGCGAGGGCC
AGGATCGTCCGTGCGACTCTTACCTACGCCCCCAACATTACCGCCCAATC
CCATCCGGGAGGAGCAGGCGAACTATGCCGACTGGTTGCTCCCGGCATGT
CAATCGGAGATGAAGAGGCACGCGGAGGCAGCGGGCCACAAGGGAGCCTT
TCGGTACGGTGATGGGGTCGACGAGATCAACACGTCGATTTCGAGCGTGA
AGAAGCCAGAAGCTGTAAAGCTGCTCCTGGCCCAGGACGCGTGGCGTGTA
TCCAAAGGTCTCGACCCTGATTGGAAGCAAGCTCCGCAGGGCACCCCGCA
AGCGAAGAGGGTGGCGAAGGAAGCGAAGGCGAAGCTTGCTGCCGAGGAGG
AAGAGCGCAGGAGGAGATGCCGTTCCAGCGGGGATGCGGCAAGGTTGTGC
TTCATCATGTTCTCGGACGAGATGTACGAGAAGGTCACCACCAGCGAACA
GGCGCCCACGGATCGAAACAAGCGCGACAACCATGCCATTGGGGTGAACG
ATCCAGACGGGGTTTGGGATGAGATAGTTGACCACTTCGTAGACGAAAAT
TTGAGGCTCGGTGGGGTACGCGCTGGCAACCCCAAATCACACGACGGCAG
CACTGCACCCGGAGTGCCTAAGATGTGGGAGGCGCTTCAATCGCTCGACT
ATGACGATCCAGCGAAAAAGTGAGTGTTGTGATTTCGTTGGTATGCCGCA
CATTTGAGACATACATGTTGTGCTGCTGGTTCGCTTATTTTACATTTAAG
GGCAGGTGCCCGGGGAGTTGCGGCTGTTTCTCTCTCCTTTCCCCCGCGGA
ACGCAGATATTGTTTGACTTGCTTTGAAAATGGGCCTCGCAGGTTAACAG
TAGGCACCAGCTGCCAGTTCTTAATTTTTGCCACTTTTATCAATTACGGG
AGCGCTGGTTTCTTGGCTGATGGTGCAGTGCCTTATGTGGGATCGTCGTT
CGAACGTCTCGCTGTTGTTTTCAGGTGGAGGGAAGAATGGACGTTCAAGG
AAGGGTCGCGGAAGGGAGAGCTGGACAAGGCTCGCGCCCGCGAGAAGGTG
AAAGGCTGGTGGACGGACATGCGTGCGGAGTTAGGGGTGGGTTTCGGACA
ACGGTCAACGGCGGGTGAAGGATTTGGTCTTTTCCGATTCCCGTTAGAAC
TATTTGCGCAAGAAGCCCACCTCCGTGTTTCGACTGGTATTTTGTTGGTA
GCGGCCTTCGTCGGGGACGCATTGATTTTCTACTGCGGTGGATGTTGGGT
TAAAAAAACAATAAAACCCGCCCCGTCCAGACGACCGTCTACCCTCCAGT
GTCCCATCCCCTGGTCTGTTTTTTTTGTTCGGGTGCGGGGGGTGGGTTTA
GCATTCCTGCTTGCCGGGTGCTGTTGTTACAGAACGAAAGCCCACCCCCC
GTCTTGTTTTTTTTTTTTATCTTTTGTCTGCAGTAGTGGTAGTTGGTCGA
CAAACCGGCTCCGTCCAGACGACCGTCTGCCCTCCTCTGCTCCGTCCTCT
GGTCGTTTTTTTTATGTGGAGGGGTGGAACGGGTTCAACGGGCTTATGTG
CCGGTGCTATTTCAGTCCAGTAGCACACGACCCCTCCAGTTATTATTTTT
TTATTTTTTCGGTCATACGCACGCAGCGGTGCTTTACTTTTCGAAACATT
CGCTCCTTCCTGGTTTGTTTTGACGTCGGGTGCGGGCACACGTGTCGCGT
GCTTGATTCATCGGTACCTTTCTGACATAGTCCCTTCACGTACGTTGTGT
GCTGTGTGAACGTTGTTAACGTAGGCGTCGCCTATCGCTGGTGGTGTCTA
GAACGCGTTTGGTCTCCGTTGGGGAAAGTTGGGACGGTCAGAAATTGTTT
TTCCCGAAACCCAACTCCTTACATATTAAGTGACCCCTCTTTTCATTCCA
TCTCATGTAAACGTGCCGTGCTTGTTTTCCAGGACGCTAAGAAGAAGAAA
GAGAAGAGTGGGAACAACGCTGAACACTACTGGTCCTTCTGTAACCAGAA
GCTGTACGTCCTGCTCGTGATGGACTGGTACGAGCTGAGGGGTGGCGACA
GCGCGAACGAGCACTGCGCAAGGTACTTCAGCGTAAGGCTCAGCGAGGAG
GATGAGGAAGCTTTCAACACTCTGTCCATGGAAGACGAGCAGTCGTCCAG
CGATTCGGATGAACCGCCCGCTCCGAAGGGGAAGCCGCGAGCGCGGAAGG
CGAGGGAGAAGAGGAAGGTCAAACCGGAAGAAACCTTGGTCCAACTTGTG
GACGCATTCAAGACCACATCAAACAACATTGCAGCGGCGATGAACAAGAT
TGCGGACAACGACGCCGAGAATCCCGTGGGTATGTTGATTGCTGCCAGCG
ATCGCCTTGATGACTGTGACGAGATGTTGAAAAATGCGAAAGAAGAAGGA
GCGTCCAAAAGAAAAAATTGACAGGCTCACTCAAAACCTCGCAGTAGCGC
AGGAGGAGTACGACAAAATCTACAAAAAGACCAGGCCTGCTGCAGAGAAA
GCGGCGGAGGAAGAGGAAGAAGATGAGGAAGGGAGTGAAGTTTCGTAGCG
ATTTGTCGTGAAGGCCCTTCGGACGAATCAAACCCGACTTCTTCCAACGA
CGCATGAAGAGGATGTCTTGTCGTTTTGGGTTTGATTCACACGGCATAGG
TTGGGTACATGCATTTTTCTGAGTATGGCTAGTTTTTTTTCCGTTGTGTG
CAGCACGAAGGTAGGGCACT

Coding sequence (CDS) from alignment at Scaffold_561:63509..66428+

>EsuBft1012_9a-0001 ID=EsuBft1012_9a-0001|Name=EsuBft1012_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1470bp|location=Sequence derived from alignment at Scaffold_561:63509..66428+ (Ectocarpus subulatus male Bft15b)
ATGCTTGCAGGATGGACCACACCGCCCCCGTCTCCGCAATGGCCGGGGCC
GGGAAAGCTGCCGGCGCCCGCGCCAGGGCCAGAATGGCTGCCGAAGCTCG
TGCCAGGGCCGGAATCGCCGACGGCACTCGCGCCAGGGGCGGGATCGCCA
CCAGCCTTCCCGCCAGGGCCGGGATTGCTGCCGACCCTCGCGCGAGGGCC
AGGATCGTCCGTGCGACTCTTACCTACGCCCCCAACATTACCGCCCAATC
CCATCCGGGAGGAGCAGGCGAACTATGCCGACTGGTTGCTCCCGGCATGT
CAATCGGAGATGAAGAGGCACGCGGAGGCAGCGGGCCACAAGGGAGCCTT
TCGGTACGGTGATGGGGTCGACGAGATCAACACGTCGATTTCGAGCGTGA
AGAAGCCAGAAGCTGTAAAGCTGCTCCTGGCCCAGGACGCGTGGCGTGTA
TCCAAAGGTCTCGACCCTGATTGGAAGCAAGCTCCGCAGGGCACCCCGCA
AGCGAAGAGGGTGGCGAAGGAAGCGAAGGCGAAGCTTGCTGCCGAGGAGG
AAGAGCGCAGGAGGAGATGCCGTTCCAGCGGGGATGCGGCAAGGTTGTGC
TTCATCATGTTCTCGGACGAGATGTACGAGAAGGTCACCACCAGCGAACA
GGCGCCCACGGATCGAAACAAGCGCGACAACCATGCCATTGGGGTGAACG
ATCCAGACGGGGTTTGGGATGAGATAGTTGACCACTTCGTAGACGAAAAT
TTGAGGCTCGGTGGGGTACGCGCTGGCAACCCCAAATCACACGACGGCAG
CACTGCACCCGGAGTGCCTAAGATGTGGGAGGCGCTTCAATCGCTCGACT
ATGACGATCCAGCGAAAAAGTGGAGGGAAGAATGGACGTTCAAGGAAGGG
TCGCGGAAGGGAGAGCTGGACAAGGCTCGCGCCCGCGAGAAGGTGAAAGG
CTGGTGGACGGACATGCGTGCGGAGTTAGGGGACGCTAAGAAGAAGAAAG
AGAAGAGTGGGAACAACGCTGAACACTACTGGTCCTTCTGTAACCAGAAG
CTGTACGTCCTGCTCGTGATGGACTGGTACGAGCTGAGGGGTGGCGACAG
CGCGAACGAGCACTGCGCAAGGTACTTCAGCGTAAGGCTCAGCGAGGAGG
ATGAGGAAGCTTTCAACACTCTGTCCATGGAAGACGAGCAGTCGTCCAGC
GATTCGGATGAACCGCCCGCTCCGAAGGGGAAGCCGCGAGCGCGGAAGGC
GAGGGAGAAGAGGAAGGTCAAACCGGAAGAAACCTTGGTCCAACTTGTGG
ACGCATTCAAGACCACATCAAACAACATTGCAGCGGCGATGAACAAGATT
GCGGACAACGACGCCGAGAATCCCGTGGGTATGTTGATTGCTGCCAGCGA
TCGCCTTGATGACTGTGACGAGATGTTGAAAAATGCGAAAGAAGAAGGAG
CGTCCAAAAGAAAAAATTGA