EsuBft1012_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1012_8a-0001
Unique Name	EsuBft1012_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_561	contig	Scaffold_561:55959..61209 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1012_8
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	337
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_8a	EsuBft1012_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_561 55959..61209 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_8a-0001	EsuBft1012_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_561 61060..61209 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_8a-0001-exon	agat-exon-101537	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 55959..56002 -
EsuBft1012_8a-0001-exon	EsuBft1012_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 57442..57671 -
EsuBft1012_8a-0001-exon	agat-exon-101536	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 58105..61209 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_8a-0001-exon	agat-three_prime_utr-134	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_561 55959..56002 -
EsuBft1012_8a-0001-exon	agat-three_prime_utr-135	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_561 57442..57671 -
EsuBft1012_8a-0001-exon	agat-three_prime_utr-136	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_561 58105..61059 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1012_8a-0001-cds	EsuBft1012_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_561 61060..61209 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_561:55959..61209-
coding sequence from alignment at Scaffold_561:55959..61209-

spliced messenger RNA

>EsuBft1012_8a-0001 ID=EsuBft1012_8a-0001|Name=EsuBft1012_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3379bp|location=Sequence derived from alignment at Scaffold_561:55959..61209- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
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CATGCCTCGCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCT
TGAGGGTGAGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCCTTCACTACA
ACCCATGTCTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAA
GTGCACAATGGCCGGCTCAAATTCAAATTTTTTTTTGGCGTTGTACGAGC
CATGTTGAGCAGTTTGCGTTGGGTTCTGTTCTAGAACCTAATTGTTTTTC
CCGAACCGCAACAAGTATGCCCGCTTGAAAATTGCTGCCATGAAGTGCCT
GCTTTTGGCGCCGTTCACTTCGTGCTGTGACTGTTCGATGGGCATGAAAC
CAGCGCCATTCGACAGCTGATGTAACAGGCTTTCTGTTGAACCCACCCAG
TGTGTGTGTTACTCAATTATTGCGTGCAAAAGTTGCAAAAGAGTGTGTGT
TTTTCTGTCAACCTCGCGGGAGAGAGCATTTTGACAGAAAAAAAGTTCCT
TTGAGAGAGAACGCGAAGTGCCCAATTGCCCAATTTGGTGTTTTATTGGG
GGGTCGCTAAACCGGGACCCCCACTGCTGTACGAGATACGAGATATTTCT
TCTCTCCATCAACTTTCTGGATCTTTTTCGAGATGGATGGAAGTATACCG
TCTCCCCGCCTCGCGGAAACCTAGAGTGTCCAGGACACTCTCCTCATCCA
TCAGCGCTCAGCCAGCCAGCCACGACTCCGCAATTCTTCTTCACACTCCT
CGAGAGGAGCTTCGCCTGCCCTTGTGGTCGATCAAACCACCACATGAGGA
CAGCGGAAGGAGGAGATGGCTGAAGAAGGGCAGGGGCGTCTTGAACTGAG
ACACGCCGCAGAAGGGCACCCGGATCGAAGCGAGGCGGAACAATCCTTCG
CCGCATCATCAACGGGGGCGTCAACGGCGTTGAGAGAGCGCCTGCTAGGA
TGCCGGAGACTGCTCTGGCTTGCTGGTGTGGTGTGAGTGCTATTGATCGG
GATTTCCACACTGCTGAAGGGCCGGTGGGCCGGAGGGGATGAAAAGGATC
CACCACGGCTTGTCGTCGTAGGGGAGGAG

protein sequence of EsuBft1012_8a-0001

>EsuBft1012_8 ID=EsuBft1012_8|Name=EsuBft1012_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MACCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_561:55959..61209-

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1012_8a-0001 ID=EsuBft1012_8a-0001|Name=EsuBft1012_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5251bp|location=Sequence derived from alignment at Scaffold_561:55959..61209- (Ectocarpus subulatus male Bft15b)
ATGGCATGCTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CATGCCTCGCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCT
TGAGGGTGAGTCTAGCCCTGCTCGCCAGAAAGACCCCCCCCTTCACTACA
ACCCATGTCTAAGCAAAAGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAA
GTGCACAATGGCCGGCTCAAATTCAAATTTTTTTTTGGCGTTGTACGAGC
CATGTTGAGCAGTTTGCGTTGGGTTCTGTTCTAGAACCTAATTGTTTTTC
CCGAACCGCAACAAGTATGCCCGCTTGAAAATTGCTGCCATGAAGTGCCT
GCTTTTGGCGCCGTTCACTTCGTGCTGTGACTGTTCGATGGGCATGAAAC
CAGCGCCATTCGACAGCTGATGTAACAGGCTTTCTGTTGAACCCACCCAG
TGTGTGTGTTACTCAATTATTGCGTGCAAAAGTTGCAAAAGAGTGTGTGT
TTTTCTGTCAACCTCGCGGGAGAGAGCATTTTGACAGAAAAAAAGTTCCT
TTGAGAGAGAACGCGAAGTGCCCAATTGCCCAATTTGGTGTTTTATTGGG
GGGTCGCTAAACCGGGACCCCCACTGCTGTACGAGATACGAGATATTTCT
TCTCTCCATCAACTTTCTGGATCTTTTTCGAGATGGATGGAAGTATACCG
TCTCCCCGCCTCGCGGAAACCTAGAGTGTCCAGGACACTCTCCTCATCCA
TCAGCGCTCAGCCAGCCAGCCACGACTCCGCAATTCTTCTTCACACTCCT
CGAGAGGAGCTTCGCCTGCCCTTGTGGTCGATCAAACCACCACATGAGGA
CAGCGGTAAGCTCTACTACTGCCATTCCCAGACAGTAAAGTCTCCGCACT
CCTCTCCTCACTCCTCACGCCCCACCGCCAGGTTGGTGGTCGTTTTTTGT
TCTATTCTTTCAAAGACTGCCGCTGCTGCTGAAACAACTATATCACCTCA
TGTCTTTGCTCCTGTGACACCCCGCCCCAGCTGCAATATAATGCGGCTGC
TGTCAGAGCTGGGCAGATACGCATGAGGGCGCGCGGTCGTGAGAGGCCGA
ACCTCAGAAGGACACCCAGACTACAAGTTCTGCTACATAGAGCGTCCAAC
AGCAGTGTGCTGCTTGTCGCAATACTGTACAAGTAAGCTCCTCTCTCGGT
CGGGAAACCCTCCGCCTTTCGCCCCACCGGCGCATTATGCTTCTCCCCAC
GCCCCGTGCACCCCTCTACACTCGCCTGCCCTTGCTAGGAAGGAGGAGAT
GGCTGAAGAAGGGCAGGGGCGTCTTGAACTGAGACACGCCGCAGAAGGGC
ACCCGGATCGAAGCGAGGCGGAACAATCCTTCGCCGCATCATCAACGGGG
GCGTCAACGGCGTTGAGAGAGCGCCTGCTAGGATGCCGGAGACTGCTCTG
GCTTGCTGGTGTGGTGTGAGTGCTATTGATCGGGATTTCCACACTGCTGA
AGGGCCGGTGGGCCGGAGGTAAGGATAAGCACTACACTAAATGTTTGCAG
AGAATTGTACATACGCACGTTACTCTGGTGTTCTGCTTCGCAGCTTTCAT
AAATACTTCCAGTTACTTCGAAAGCAATGTTGTGGCACGCATTTCAGTCG
CCGCCTGGCCGCTCGAGGCAGAGCAGAGGGTAGAGTTCTAGGGCTTGCTC
GCTTTACTGCTGTAATTTTTCCGCAGAACACGAGGATGCCCACGCCTCGC
GATTAGGTTCAATGTACGGAATGCGTCAGAAGTTTACCTGTGGAGGGCTG
TTGCGAAGCCTGCCCCGACATGTGCCATGAATAGACGGAGCCGTAGAGAG
AGAGAGAAAGGCGCCCGCAGTATTTTTAGTAGAAGAACGGCAGGAACTGC
TGTGAGCAACACACAGCAGCCGAAAAGCGTTGCCTTGCTACTGCTGTACA
AGTCTGCCACTCGAAGGCACCGTCGTTATTGCCAGGAAGCCCCTAGGGCG
TCCGCCCAAAATGGAAATCGCAATTTACGTCTCCACAGCAGTAGTTGCAC
AGCAGCAGCAGCAGCTGCAGCAGTTTCAGCTGTTTCACACGTCAGTGTGA
GAAAAGAGCTGCTGTTCTGGAGAACAACTGCTGTTGTTCCGATTCGTTCT
GATCTGGAGATAAGTTGCACAACCACGCACACATCCGTGTCAAGCACCTT
ATCCACAGCAGCATCAAGTACTGCTGTGGTTTGAAGAACTTTTTCGTCGT
CCGGTGGTTATCTCGAGACAACCGTTTGTTCAGCTCAGCTTTTTCATGAA
AATCGTTACTACAGCTTGTGTGCGTGTTGCCTCCCAGCCTTCCAGACAAC
CACCGAAACCGTTGTACGCTATGCGGATGGTTGTTGTTGTCGTCGCAGGG
TGTGCATGTCCGCGCAGCTGTATTACGGAAATGGAAACAGGTTGGAAACA
AACAAGTAACCAGCGGGCGTTTTCCTCAACTTTCTACGAGGAGATCGTTC
CAAACTACAGCGGCTTCCATGACCATCTGTCGTCGACAGCCCACGGCCAG
TAGTGCTGCTGTAGTCATGATCTCCTACTGCTGTACTCTAATGCCTGTTC
AATAGCAGTTACATTTGTCTTTATTTTTCATAAGATCGAGTGGATCCACA
TAGAAACTACGTACCACAGCAGTGTTTTGGTGTCTAGCACCAGCTGGTTA
TCACTGGTGATCACTGGTATACATCATCCGTAGTGTACAGGCATGAAACA
GACTCGAAATACGAAATGAGGCCAGTACCCAGCCGGTTTCCCTCCACTCA
CTGCAAAGACTCCATAGTCTTTCTGTGTATTTATTTTCCTACGACAACAC
ACGCTCTTTGCGCAGCAGCCGCAAGAGCGCGTTCAAACCAACCCGCTCAC
CATTGACAACCAGACACACCCCGGCCTCTTGTTGGTCGCGTCCGGGGGGG
GGGACAGGGGATGAAAAGGATCCACCACGGCTTGTCGTCGTAGGGGAGGA
G

Coding sequence (CDS) from alignment at Scaffold_561:55959..61209-

>EsuBft1012_8a-0001 ID=EsuBft1012_8a-0001|Name=EsuBft1012_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_561:55959..61209- (Ectocarpus subulatus male Bft15b)
ATGGCATGCTGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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