EsuBft1011_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1011_6a-0001
Unique NameEsuBft1011_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_644contigScaffold_644:358643..361257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1011_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length127
Hectar predicted targeting categoryother localisation
Evalue1.92e-105
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_6aEsuBft1011_6aEctocarpus subulatus male Bft15bgeneScaffold_644 358643..361257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_6a-0001EsuBft1011_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_644 360048..361257 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_6a-0001-exonagat-exon-10322Ectocarpus subulatus male Bft15bexonScaffold_644 358643..358866 +
EsuBft1011_6a-0001-exonagat-exon-10323Ectocarpus subulatus male Bft15bexonScaffold_644 360015..360613 +
EsuBft1011_6a-0001-exonagat-exon-10324Ectocarpus subulatus male Bft15bexonScaffold_644 360664..361077 +
EsuBft1011_6a-0001-exonEsuBft1011_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_644 361224..361257 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_6a-0001-exonagat-five_prime_utr-73Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_644 358643..358866 +
EsuBft1011_6a-0001-exonagat-five_prime_utr-74Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_644 360015..360047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_6a-0001-cdsEsuBft1011_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_644 360048..360613 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1011_6a-0001 ID=EsuBft1011_6a-0001|Name=EsuBft1011_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1271bp|location=Sequence derived from alignment at Scaffold_644:358643..361257+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCAAGAGAGTGCGAGTTTCTAGTGCTAACAAAGAGCGCAAGCGAAGGCA
CCGGCAGCCGTTGCCGGAACAGCAGCAGAAGCCTCGAGCACAACAACAGG
AGCCCGATCAACGCGTGGAGGAGATCGAGACCAAGCCATCTATCAAGCAA
CCAGCTCTTCGTTCCGCGAACATTAGCCACGCGTAGATCCGGGGCACGGC
GTTGCTACCCCCTCAGTGTCACGCTTTTCTCTCTCCCTCTCTCACTTTTT
TGTCGGTATGTCGGATACCCCTGAGGGACTGCAACTGCAAATTGACGCGG
CGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGT
GCCGTCACGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATG
GAAGTGGGGGATCGAGGAAATTGCAGTAGTGGACCAGTACACATACCTCG
GAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGAA
ACGGAAAAGGAGAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAA
CCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCG
TACCGAGGCTAGAGTACGCCGGAGAATTATGGGAAGGAAATAAGAAGGTA
GTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAATCATCCAAGG
ATGCTCCAAGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCC
AATCCCTACGGTCGGGAAGAGACGCGAGAAAGCTGACATGGCAGTATAGC
ATGTGCGGGATGGGAGAGGAGAGACAACCCACGGAATGGGTCAAGGTTGT
AGAGGGCGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAGA
CGGAGGGTCTACAGGGCTTCAAGGAGATATCTGTTGCTTGTGCCGAGAGA
GAAGACAAGAATCTAAGGAAAGAAACCAAGGATAAGGAGGGTCTAGAAGT
GTATGGAATGTTGAAGGAAGGCATAGGGTTCAAGGATTACCTACATGGAC
CAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATA
GGCGTTCGAGAACGTCGACGAAGACGTAGGACGGTAGACGAGGAAGACGA
CGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAG
TCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGGAAGACATTTCT
GAGCCACCTTTGGCAAAGTAG
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protein sequence of EsuBft1011_6a-0001

>EsuBft1011_6 ID=EsuBft1011_6|Name=EsuBft1011_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=337bp
MSDTPEGLQLQIDAAKKFTDKWRLSANVKKSAVTVCNENKEEPVEHRWKW
GIEEIAVVDQYTYLGVEIAKDCSWNAHMSKETEKEKARAGKLHPILANRH
LDTRIKLTVLKSVIVPRLEYAGELWEGNKKVVKELEAAQMKAAKIIQGCS
KRTSNAAVRAELGIQSLRSGRDARKLTWQYSMCGMGEERQPTEWVKVVEG
VWKGLDIDEDETLETEGLQGFKEISVACAEREDKNLRKETKDKEGLEVYG
MLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGVRERRRRRRTVDEEDDEF
KCDCGFECEDRVHVVAECPLYKKEREVEDISEPPLAK
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mRNA from alignment at Scaffold_644:358643..361257+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1011_6a-0001 ID=EsuBft1011_6a-0001|Name=EsuBft1011_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2615bp|location=Sequence derived from alignment at Scaffold_644:358643..361257+ (Ectocarpus subulatus male Bft15b)
CTCAAGAGAGTGCGAGTTTCTAGTGCTAACAAAGAGCGCAAGCGAAGGCA
CCGGCAGCCGTTGCCGGAACAGCAGCAGAAGCCTCGAGCACAACAACAGG
AGCCCGATCAACGCGTGGAGGAGATCGAGACCAAGCCATCTATCAAGCAA
CCAGCTCTTCGTTCCGCGAACATTAGCCACGCGTAGATCCGGGGCACGGC
GTTGCTACCCCCTCAGTGTCACGCGTCAGTGGATGGGGATGAGTTTTCCA
TTTCCCAGATTTCAGGATTCATGGGTGTTAAGCTAGGTAGCCAGGCCGGG
CAGGTGGGGAGAAGGATGAAGGCTCTGTACACCGCTCGGTGTGGCGCGGT
TGCAGGCGATAAAATCCCGAACAGGACCGCGGGGTACAACGGATAAAAAA
TATTCAGCGAGAACGTGTACGACGCACGTGACCGTGGTATCATGGAGTAG
GCGATCCGTAAGGTAGCTCAGACTTGATCAGTTTTTTGTTTTGGGGTTTT
TGTCGCACTCTGGCGTAAGTGGTATATGGTGCCACGCGGGCAAGCATGAA
ACCATTTGTCAATAAACTAAACAACGTAACGCATCAGAACATATATTTAC
GTGGCATGGTTGAGAAGGTGGTGCACATGGCTTCCCTTCGAGCCATCCGT
CGGCGTCAAATCGGGTCCATCATCGAGCAACCGTACAGTTAACGCTACAA
TCGGCACGGAGTGTGGAATCTGTCGTCCTTTGCGGTACTCTTCTACTACA
TGTGGATAAAACCGGCGGGGCTTGCTCCCTTCTATTCGCACTTCGCTCTC
TCCCCCTCGCCGATGGAAACAACGGCGGTTTGGAAAACGAACGGAGGATA
GGCGCTCCTTGCGCTCGTGACTCATCGTCGGAACATCATGGCTGTTTGAA
CTTTGTTCTCTCCCTCTCTCCGATCGGAGAAATGCTGGTTGGGAGAACGA
GAGCGCGATCAGTGTTCATCACGTGCGCGACACATCGTCGAACATCATGA
CTGTTTGAACATTATTTCTTGCGCGCGCGACCACGCGTCGGGCATATCAT
GGGTGTTTAAATCACTGTAGAAGAAGATGCTGCGGAACAGAGGGTCGATG
CCTCCTTGCGCACGTGACCAAGCGTCTGACACATCACGGCTGCTCGAACT
TTGCTCTCTCCCTGTCCCCCCGAGTGCAAAAAATGTCGGCGATGGAACGA
GAGCACGACCGGTGCTCTCGCGTGCGAGACAAACCGTTTGAAACATCATG
GCTATTTGAACGATGTTTTTTTCTTCTCGCAAATTTGACAATTGCTGGTT
TGTGGAACGAACGGAGAATCGATGCCTCCTTTCACGCGAGATAAAGCGTG
GGACACGTAATGGTGTGCCAAGTTTTCTCTCTCCCTCTCTCACTTTTTTG
TCGGTATGTCGGATACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCG
AAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGC
CGTCACGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGA
AGTGGGGGATCGAGGAAATTGCAGTAGTGGACCAGTACACATACCTCGGA
GTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGAAAC
GGAAAAGGAGAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACC
GGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTA
CCGAGGCTAGAGTACGCCGGAGAATTATGGGAAGGAAATAAGAAGGTAGT
GAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAATCATCCAAGGAT
GCTCCAAGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAA
TCCCTACGGTCGGGAAGAGACGCGAGAAAGCTGACATGGCAGTATAGCAT
GTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGT
GGGCAAACAAAAAGAGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAG
AGGGCGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAGACG
GAGGGTCTACAGGGCTTCAAGGAGATATCTGTTGCTTGTGCCGAGAGAGA
AGACAAGAATCTAAGGAAAGAAACCAAGGATAAGGAGGGTCTAGAAGTGT
ATGGAATGTTGAAGGAAGGCATAGGGTTCAAGGATTACCTACATGGACCA
ATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGG
CGTTCGAGAACGTCGACGAAGACGTAGGACGGTAGACGAGGAAGACGACG
AGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTC
GCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCT
GGGAACAATAGATAGGATGTACAGGGAAATGTTTGAGGCATGGAATAGAG
AGGAAAGGACGGTAGCTGTACTGGGGTATAGGAGTTGGGTCGATAAGGCG
GGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTCTGAGCCA
CCTTTGGCAAAGTAG
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Coding sequence (CDS) from alignment at Scaffold_644:358643..361257+

>EsuBft1011_6a-0001 ID=EsuBft1011_6a-0001|Name=EsuBft1011_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1014bp|location=Sequence derived from alignment at Scaffold_644:358643..361257+ (Ectocarpus subulatus male Bft15b)
ATGTCGGATACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAA
GTTTACTGATAAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCA
CGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGG
GGGATCGAGGAAATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGA
GATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGAAACGGAAA
AGGAGAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCAC
CTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGAG
GCTAGAGTACGCCGGAGAATTATGGGAAGGAAATAAGAAGGTAGTGAAAG
AACTCGAGGCGGCGCAGATGAAAGCAGCGAAAATCATCCAAGGATGCTCC
AAGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCT
ACGGTCGGGAAGAGACGCGAGAAAGCTGACATGGCAGTATAGCATGTGCG
GGATGGGAGAGGAGAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGGC
GTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAGACGGAGGG
TCTACAGGGCTTCAAGGAGATATCTGTTGCTTGTGCCGAGAGAGAAGACA
AGAATCTAAGGAAAGAAACCAAGGATAAGGAGGGTCTAGAAGTGTATGGA
ATGTTGAAGGAAGGCATAGGGTTCAAGGATTACCTACATGGACCAATGGA
TGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCGTTC
GAGAACGTCGACGAAGACGTAGGACGGTAGACGAGGAAGACGACGAGTTC
AAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCGGA
ATGTCCGTTGTACAAGAAGGAGAGGGAAGTGGAAGACATTTCTGAGCCAC
CTTTGGCAAAGTAG
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