EsuBft1011_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1011_3a-0001
Unique NameEsuBft1011_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_644contigScaffold_644:334028..334969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1011_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length29
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_3aEsuBft1011_3aEctocarpus subulatus male Bft15bgeneScaffold_644 334028..334969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_3a-0001-exonagat-exon-10306Ectocarpus subulatus male Bft15bexonScaffold_644 334028..334117 +
EsuBft1011_3a-0001-exonEsuBft1011_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_644 334761..334969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_3a-0001-cdsEsuBft1011_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_644 334028..334117 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_3a-0001-exonagat-three_prime_utr-125Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_644 334776..334969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_3a-0001EsuBft1011_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_644 334028..334775 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1011_3a-0001 ID=EsuBft1011_3a-0001|Name=EsuBft1011_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=299bp|location=Sequence derived from alignment at Scaffold_644:334028..334969+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATGCGGGGCCAGCGTTTTTGCCGCAGCGACGACGTCGTCACCACG
AAGTCCTCAAAAGCTAAAAGCGCAGGGGACGGCCTGGAAGTGTGTGGGCG
TGTAGTTCAGTTGTGAGCACGCAAACGTGCTGCAGGGATTGTAGGTGTAC
CTCGTCGGGCTTGTGTTCCCCTTTCTTGCTAATAGTGTGCGTGTTCTTTA
GATCTTCTGATGGCTCTAGCATTTTTGTGACCACGGACCGAGTCTTTGCT
AGATTTTGGGATTAGCAACTGACACGAGTTTAATGTGAAGAAAACAACA
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protein sequence of EsuBft1011_3a-0001

>EsuBft1011_3 ID=EsuBft1011_3|Name=EsuBft1011_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=34bp
MGCGASVFAAATTSSPRSPQKLKAQGTAWKCVGV
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mRNA from alignment at Scaffold_644:334028..334969+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1011_3a-0001 ID=EsuBft1011_3a-0001|Name=EsuBft1011_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=942bp|location=Sequence derived from alignment at Scaffold_644:334028..334969+ (Ectocarpus subulatus male Bft15b)
ATGGGATGCGGGGCCAGCGTTTTTGCCGCAGCGACGACGTCGTCACCACG
AAGTCCTCAAAAGCTAAAAGCGCAGGGGACGGCCTGGAAGGTACTACTGC
TGTATCGTACAGTCGCAAACTAGACAAGTCGTACATGAATCATCATGCGG
CATGTTATCTCGCGGAAACCTACATGCACGTAACCTGCTGTGTACATTGA
AGCAACTGCGCTGTAGACCATACTCGATGTTGTTGCATTTGTATTTTAGA
CTGGTGGCATACATGGAGTGGACACCGACAACCACACGCAATCGGAGCTG
TTTACGGTCGTGCCGGCCCAACCCAACCGAACCATCTCACCACGGCCAAC
GCGGACGGCATGGTGACCGAGAACGGGGCGAGAACGGGGTGTCGCGTTCT
AAAAAAGAATATCGGAATGCGCAACAGAGAGAGGACACTGGAGAGTAGTT
TAATCGACCGCTCGAACCAACGCTCGACCAATCAAAGGGCGTAAGACCCC
GTACATTGGAAGTTACCGTAAAAAACTGTACTGACCGGTCGATCATCTAA
GGCGGGAAGTCCAACGCTGTTGTACCTACCACCCGTTTTCGGGTCTATCA
ATTTCTGGGGAGCTCTGATGAAGATCGCAAAGAACCCTGCCTTACACTAT
GCTAGACAACTAACGATAATGTGTCGCACGAGGGTTAAGTGCGGGACACG
GGGGGTGATGCTGCTGCTGTAGTCAAATTGTAGTGTGTGGGCGTGTAGTT
CAGTTGTGAGCACGCAAACGTGCTGCAGGGATTGTAGGTGTACCTCGTCG
GGCTTGTGTTCCCCTTTCTTGCTAATAGTGTGCGTGTTCTTTAGATCTTC
TGATGGCTCTAGCATTTTTGTGACCACGGACCGAGTCTTTGCTAGATTTT
GGGATTAGCAACTGACACGAGTTTAATGTGAAGAAAACAACA
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Coding sequence (CDS) from alignment at Scaffold_644:334028..334969+

>EsuBft1011_3a-0001 ID=EsuBft1011_3a-0001|Name=EsuBft1011_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=105bp|location=Sequence derived from alignment at Scaffold_644:334028..334969+ (Ectocarpus subulatus male Bft15b)
ATGGGATGCGGGGCCAGCGTTTTTGCCGCAGCGACGACGTCGTCACCACG
AAGTCCTCAAAAGCTAAAAGCGCAGGGGACGGCCTGGAAGTGTGTGGGCG
TGTAG
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