EsuBft1010_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1010_9a-0001
Unique NameEsuBft1010_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:62539..63022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1010_9
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length31
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_9aEsuBft1010_9aEctocarpus subulatus male Bft15bgeneScaffold_54 62539..63022 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_9a-0001-exonagat-exon-109824Ectocarpus subulatus male Bft15bexonScaffold_54 62539..62591 +
EsuBft1010_9a-0001-exonEsuBft1010_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 62766..63022 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_9a-0001-exonagat-five_prime_utr-72Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_54 62539..62578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_9a-0001-cdsEsuBft1010_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 62579..62591 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_9a-0001-exonagat-three_prime_utr-123Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_54 62834..63022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_9a-0001EsuBft1010_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 62579..62833 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1010_9a-0001 ID=EsuBft1010_9a-0001|Name=EsuBft1010_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=310bp|location=Sequence derived from alignment at Scaffold_54:62539..63022+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGGAAAACACCTGTATACATTCCGAATTCCTTTAGTTCAGATGTCAGAGT
ACAAGTACAGTTTTGGTATGGTGTTGAGCACAACATTTGGTACCGCATTC
GTCATGGGGGGTGATTCATGAAGTTTACCGGTAAGAATAAGAGTAGAGGT
AGGAGCAACACGATAGGACGTGTTTTGTCGATGGAAGTACAGATAACCAA
CGATGTTGGTATCAACGCAGGTAGCCACTGTGGTATCAATCAGGATGTGA
GGATTGATTTGAACGTACTATTAGAGACATGAGGATGGTTGAATGGAACT
CAATGGTTTT
back to top

protein sequence of EsuBft1010_9a-0001

>EsuBft1010_9 ID=EsuBft1010_9|Name=EsuBft1010_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=26bp
MSEYKYSFGMVLSTTFGTAFVMGGDS
back to top

mRNA from alignment at Scaffold_54:62539..63022+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1010_9a-0001 ID=EsuBft1010_9a-0001|Name=EsuBft1010_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=484bp|location=Sequence derived from alignment at Scaffold_54:62539..63022+ (Ectocarpus subulatus male Bft15b)
AGGAAAACACCTGTATACATTCCGAATTCCTTTAGTTCAGATGTCAGAGT
ACAGTTTTGGTATGGTGTNGTTGAATATTTTCAGCTAGCTGCAGCAAAGC
TGATGAGGGACATGTTGATACATCATCATAAGGAGGATTTTTTAATTACT
AAGTTACACAATTTTCGTCAAGCTTTCTTTAGGAAAACACCTGTATACAT
TCCGAATTCCTTTAGTTCAGATGTCAGAGTACAGTTTTGGTATGGTGTTG
AGCACAACATTTGGTACCGCATTCGTCATGGGGGGTGATTCATGAAGTTT
ACCGGTAAGAATAAGAGTAGAGGTAGGAGCAACACGATAGGACGTGTTTT
GTCGATGGAAGTACAGATAACCAACGATGTTGGTATCAACGCAGGTAGCC
ACTGTGGTATCAATCAGGATGTGAGGATTGATTTGAACGTACTATTAGAG
ACATGAGGATGGTTGAATGGAACTCAATGGTTTT
back to top

Coding sequence (CDS) from alignment at Scaffold_54:62539..63022+

>EsuBft1010_9a-0001 ID=EsuBft1010_9a-0001|Name=EsuBft1010_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=81bp|location=Sequence derived from alignment at Scaffold_54:62539..63022+ (Ectocarpus subulatus male Bft15b)
ATGTCAGAGTACAAGTACAGTTTTGGTATGGTGTTGAGCACAACATTTGG
TACCGCATTCGTCATGGGGGGTGATTCATGA
back to top