Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1010_9 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | TRANSMEMBRANE |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 31 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1010_9a-0001 ID=EsuBft1010_9a-0001|Name=EsuBft1010_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=310bp|location=Sequence derived from alignment at Scaffold_54:62539..63022+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGGAAAACACCTGTATACATTCCGAATTCCTTTAGTTCAGATGTCAGAGT
ACAAGTACAGTTTTGGTATGGTGTTGAGCACAACATTTGGTACCGCATTC
GTCATGGGGGGTGATTCATGAAGTTTACCGGTAAGAATAAGAGTAGAGGT
AGGAGCAACACGATAGGACGTGTTTTGTCGATGGAAGTACAGATAACCAA
CGATGTTGGTATCAACGCAGGTAGCCACTGTGGTATCAATCAGGATGTGA
GGATTGATTTGAACGTACTATTAGAGACATGAGGATGGTTGAATGGAACT
CAATGGTTTT back to topprotein sequence of EsuBft1010_9a-0001 >EsuBft1010_9 ID=EsuBft1010_9|Name=EsuBft1010_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=26bp
MSEYKYSFGMVLSTTFGTAFVMGGDS back to topmRNA from alignment at Scaffold_54:62539..63022+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1010_9a-0001 ID=EsuBft1010_9a-0001|Name=EsuBft1010_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=484bp|location=Sequence derived from alignment at Scaffold_54:62539..63022+ (Ectocarpus subulatus male Bft15b)
AGGAAAACACCTGTATACATTCCGAATTCCTTTAGTTCAGATGTCAGAGT
ACAGTTTTGGTATGGTGTNGTTGAATATTTTCAGCTAGCTGCAGCAAAGC
TGATGAGGGACATGTTGATACATCATCATAAGGAGGATTTTTTAATTACT
AAGTTACACAATTTTCGTCAAGCTTTCTTTAGGAAAACACCTGTATACAT
TCCGAATTCCTTTAGTTCAGATGTCAGAGTACAGTTTTGGTATGGTGTTG
AGCACAACATTTGGTACCGCATTCGTCATGGGGGGTGATTCATGAAGTTT
ACCGGTAAGAATAAGAGTAGAGGTAGGAGCAACACGATAGGACGTGTTTT
GTCGATGGAAGTACAGATAACCAACGATGTTGGTATCAACGCAGGTAGCC
ACTGTGGTATCAATCAGGATGTGAGGATTGATTTGAACGTACTATTAGAG
ACATGAGGATGGTTGAATGGAACTCAATGGTTTT back to topCoding sequence (CDS) from alignment at Scaffold_54:62539..63022+ >EsuBft1010_9a-0001 ID=EsuBft1010_9a-0001|Name=EsuBft1010_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=81bp|location=Sequence derived from alignment at Scaffold_54:62539..63022+ (Ectocarpus subulatus male Bft15b)
ATGTCAGAGTACAAGTACAGTTTTGGTATGGTGTTGAGCACAACATTTGG
TACCGCATTCGTCATGGGGGGTGATTCATGA back to top
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