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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| ProteomeId | EsuBft1010_8 |
| Protein domains | SSF57959 |
| Protein domains | G3DSA |
| Protein domains | IPR004827 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Length | 86 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Basic leucine zipper and PAS domain protein |
| Ec32 ortholog | Ec-14_003470.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003700 |
| GO | 0003824 |
| GO | 0043565 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1010_8a-0001 ID=EsuBft1010_8a-0001|Name=EsuBft1010_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=861bp|location=Sequence derived from alignment at Scaffold_54:54055..57976- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGGCGGCAACGGGGCTAGGGATACCCCAGAACCAAATACACGGCGC
AGCGCCGACCGGAGCCGGGGGAGTTGGCGGCGGCGGTGCAAATAGCGGAG
GCGTCTATACGCCAGGGTTGGTACCAGGGGGGATGGGGTTCATGCCGGCC
ACAGCAGCAGCAGTGGCGGCGGCGGCGGCGGCGGTTTCCCCTGACCCGGT
CTCCGACACGTTGTTACCACTAGCACCGTCGTCAGCGGTGACGGGCGGGG
CGGGGGGAATGGTGGCGCCTGGTGTGGGGCGGGAGGCCGGGGACGGAGGG
GCAGCGGGGATGACGAGAGGCCTGGCGGCGGCGGCTGCTGCCGAAGGCAA
GCAGCAATGGAGGGAGGGGGGTACGGTCGCCGCGATGAAGTCGAAGGAGC
AAGCGGTGCGGCGAAGAGAACGGAATCGCGTCCTCGCGAGAGAAACTCGT
TTGAGGAAGAAGTTTTTCTACGAGTCTCTCCTACAGCGCATGGCGGCCCT
GCGCAAAGACAACCGAAAATTCAAGACCATTCTCAGGGATAGGCTGGGCG
AGCGGGCGCAGCAGGTGGTTTTCGATTGCACTTCAGAGTTGTCCCGACAA
GTCACAGTCGGCAGCATGGAGGACGCCGAGGGGACGGACGGGGGCGTGAC
GATGACGATGGTGATGACGGACATGCAAGTTGATGCAGAAGTCGCCGCTG
CGGCGAAGGGCGGGGGGGGTAAGGGTACGGGGTCGAGCAAACGCGGCGGC
GGCGCCGGTGGTGGTGGTGGTTGCGCCGGCGCTTCCACGCGGGGTCTTAG
CAGGCCCGATTACCGCCTCGTGAAGAGCATCGAGATGGTTAGTGGATCGA
ACGTCGAGTGA back to topprotein sequence of EsuBft1010_8a-0001 >EsuBft1010_8 ID=EsuBft1010_8|Name=EsuBft1010_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=286bp
MAAATGLGIPQNQIHGAAPTGAGGVGGGGANSGGVYTPGLVPGGMGFMPA
TAAAVAAAAAAVSPDPVSDTLLPLAPSSAVTGGAGGMVAPGVGREAGDGG
AAGMTRGLAAAAAAEGKQQWREGGTVAAMKSKEQAVRRRERNRVLARETR
LRKKFFYESLLQRMAALRKDNRKFKTILRDRLGERAQQVVFDCTSELSRQ
VTVGSMEDAEGTDGGVTMTMVMTDMQVDAEVAAAAKGGGGKGTGSSKRGG
GAGGGGGCAGASTRGLSRPDYRLVKSIEMVSGSNVE back to topmRNA from alignment at Scaffold_54:54055..57976- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1010_8a-0001 ID=EsuBft1010_8a-0001|Name=EsuBft1010_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3922bp|location=Sequence derived from alignment at Scaffold_54:54055..57976- (Ectocarpus subulatus male Bft15b)
ATGGCGGCGGCAACGGGGCTAGGGATACCCCAGAACCAAATACACGGCGC
AGCGCCGACCGGAGCCGGGGGAGTTGGCGGCGGCGGTGCAAATAGCGGAG
GCGTCTATACGCCAGGGTTGGTACCAGGGGGGATGGGGTTCATGCCGGCC
ACAGCAGCAGCAGTGGCGGCGGCGGCGGCGGCGGTTTCCCCTGACCCGGT
CTCCGACACGTTGTTACCACTAGCACCGTCGTCAGCGGTGACGGGCGGGG
CGGGGGGAATGGTGGCGCCTGGTGTGGGGCGGGAGGCCGGGGACGGAGGG
GCAGCGGGGATGACGAGAGGCCTGGCGGCGGCGGCTGCTGCCGAAGGCAA
GCAGCAATGGAGGGAGGGGGGTACGGTCGCCGCGATGAAGTCGAAGGAGC
AAGCGGTGCGGCGAAGGTGAGTGGGGTTTTGTATTGTAGCGGCTTCTTCT
TTCCTTGTCGGGGGGAAAGGCGGGGAGTTTGCTATGCCTTTGGTGTTAGG
CCATTGACAACGCGGGTTCTCGAGGGAGGTATGGAGCATTGTTCAGCCCA
CCTATCCTGTCGATATCACTTCCCGCCTGCTCAAACCCACCTCCTATGCC
CCAGTACAGCTACCGTCTTCGCCTGGCTATTCTATGCCTAAAGGGGGGTT
GTAGGGAAAACGTTCAAGACGGGGGCCGTGTCTATCACCAACGGTGCTCG
CTCGCACGCATGAATGTTGGGGAGGACATGTTTTGGACTGGAAAAACCCG
CGCCTTTTCTTTCCGAGTATCCGCGTTATTCATTGATGGAATCTTTGTTC
TTGAAAGTGTGCTGTCGAGCTGTGCCGGCAGTGCATACACCTCGGAGCAT
ACTTGCAAGGCCGGGGGGCCAGAGGTTGATTCATTGGACAGCCAATATCT
GGGGATGACCATCTATCTTCTCCTCTACCGCGTGGGCCGATGTCGTTGCA
ACCGTTACGCTGACGGCACGTCTTGGGGGGGGGTGATTTCTGTTCCTGTG
GACGTCGCATCCGTCCTGGGTCGACTCCTGTTTCGCGGCTGACGAACCAG
ACTGCAAACATATGGCGAGCCTGATCCCGCGCGTGTTGGTGGTCGGCTCG
GCTGTCAGCACAACCGACCGGCCTTGCCGCGCCCTCGCCGCCGACAACGG
GTTGGCTGGCACCAACGAGACGGGCGGTTGGCTGTGTGTGTAGCCGTTGA
GCGGCTGGCGTTTTATGTAATCGTTGTGCAAACCCCCACGCCGAACCATC
TCCGTCGCCTCTGTCTTCGTGTGTCAACCTCTCTCTGCTTTTTATTATTA
ACACCGACGATGACGATGACGATGACGATGACGATGACGATGACGATGAT
GATGATGGCACCAACGGCACAAAAACGAACGGATGGGCGGGGCTGAAACT
CAACCTCAACCCGGCAGAGAACGGAATCGCGTCCTCGCGAGAGAAACTCG
TTTGAGGAAGAAGTTTTTCTACGAGGTGACGGATCCAACGAATGCACTCA
CGTTTCACGCGTCACGGGTGTATGAAGAGATGTGCGCACATTGCTTCTTC
GTGGGTGTCACCCCCAAGTCGAAGCCTGGGTGGAACTTTAGAGGCATCCC
TCGTGTAGAGTGGAGGAGGCCCATAGGTTTGTTTTTCGACGCCCAAAAGG
CGTGTGTTGTGTTTTCCTTTAGAAAATTCCTGGGAAGTTCCGTTGGCCGG
GAAGGGCAGAGATTGGACCAGAGCCGAGAGCACCGACAAGAGAGATGAAG
AAGGGGGGGAGGGGTTCCACTTGAAGCAAAGGGGTTCGCACTTCGTCGAA
TCGGGCGCAAATGCCAATAGAGTGGTGTTGCGGAAGGTCGGCGGGGTGGG
CCCATCGATCGGCTCTGGCCCGAGTAAGCGGCAAGGTTCTTCTCGTCTCG
TAGCGGGACAGCGTCTTAGGTAGCCGGGCGTTGGAAGGCCGCAAGAGAGG
TTGGGCTGGCGCGTGTGCGAAAGAGAGAGAGAGACATCAGGGAAGGACAG
ACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAG
AGAGCTTGGGAGCCGTCGATATGGCATCATTCGCTAGGCGGGAAAGTCGT
ATCGTGAGTATTCATACGCTTGTTGACCTTTCTTCCTAGAGTCTCGAAAG
CCAAGTCAAGCCCCTGCAACAGAGACAGCGATAATAGTTCACCAAAGGAA
TTTGTTTGTCATACAGGTATGCAAGTTGTGCAACCCAGCAAGCCAGTCAC
ACCACGAAAACACGCTTTTTCGATCCCCCCCCCCCGCCCTTCTTTTCCGC
GCCCTCTCGCCGGCGTGCTCGTCTTACCCCCTCATCCACCACCACCGTCT
TTGCCACGAATGCTGTCTCGTTTGTCCGTTTGCACCGCTGCTGCGTGTCG
CCCTCTACCCTCTGCACGTGCCGCTCGTTCGATACTGCAACATGCGCACC
TGCTGTGGCACCACTACATGTACCACCACTGCATGTGCCGCTGCTACCAC
CACTTGGGGATCGTTCTGCGTACGGACGGGGCGGGTAGTCTCTCCTACAG
CGCATGGCGGCCCTGCGCAAAGACAACCGAAAATTCAAGACCATTCTCAG
GGATAGGCTGGTGAGTCCATTGTTGTCGGGGGGGGGTGGTGTTGGTGCTG
GGACTTTGATGAGCTTGTTGAGATGTCGAGCGACGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCCCCCCCCCCCCCCG
CGTGTGAAACATTTGGACACGCGGGATGCCCAACCAACTCATGATGCATG
TGGTTTGGCACGGTAAACGCAAGGATGATGAGCATGTTCTGGTTCACCCT
TCAACCGTGGCCTGGGCCGGCGAAAACCCTGCATATCGCGCTCCCGTCCA
CGCGTTGTAGCGATGCGAGGTCGACGGTCTACCGACTACGACATGCGTTT
GCATGAGTACTCCCCCGGCCCTCCCCCCTACCCTTTTGTGCCTGCCCGGC
ACACCCGATGTTGTCCTCCCGGTTTGGTCGGGGTGCCTGTATGAGACACG
GGAGCCTTTCGAGACACACGCCCGTCGTCTCACTTTAACGTCTCAACGAG
TAACCCCCCCCCGCGCGCGCACGTGCCCCCATCCCACCACCGCTAGCTGT
TGGATATTTCCTCCCTTCATGACCGTTTGGTTTCTGCTGCTGTTGTGCCG
CTTCGCCTCCCATTTATCTATCAATTTTTGGCCGTCAACCAAGGGCGAGC
GGGCGCAGCAGGTGGTTTTCGATTGCACTTCAGAGGTGAGAAATGCGGGG
GTCCCTTGTTCAAACGTGTGCGCGTTTTCTATGAGTCGATCCTGATGGTA
GCAATCGGGTGTGAGTTCTTGTTTGAACGACGTATGTACATATGTACGCC
CACGACAAATTCACTTGTCTTCTCATGATACCACACGCCTTTCCCTCGTG
CACACCTTCCGTTTTCTGCCCCCACCTTCACTGGGCATCACGAGCCGCAT
GTTCACCTGTTGCTTCTGCCCTCTCACCCCCCCCCTTGCCGAAACAAAGT
TGTCCCGACAAGTCACAGTCGGCAGCATGGAGGACGCCGAGGGGACGGAC
GGGGGCGTGACGATGACGATGGTGATGACGGACATGCAAGTTGATGCAGA
AGTCGCCGCTGCGGCGAAGGGCGGGGGGGGTAAGGGTACGGGGTCGAGCA
AACGCGGCGGCGGCGCCGGTGGTGGTGGTGGTTGCGCCGGCGCTTCCACG
CGGGGTCTTAGCAGGCCCGATTACCGCCTCGTGAAGAGCATCGAGATGGT
TAGTGGATCGAACGTCGAGTGA back to topCoding sequence (CDS) from alignment at Scaffold_54:54055..57976- >EsuBft1010_8a-0001 ID=EsuBft1010_8a-0001|Name=EsuBft1010_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=861bp|location=Sequence derived from alignment at Scaffold_54:54055..57976- (Ectocarpus subulatus male Bft15b)
ATGGCGGCGGCAACGGGGCTAGGGATACCCCAGAACCAAATACACGGCGC
AGCGCCGACCGGAGCCGGGGGAGTTGGCGGCGGCGGTGCAAATAGCGGAG
GCGTCTATACGCCAGGGTTGGTACCAGGGGGGATGGGGTTCATGCCGGCC
ACAGCAGCAGCAGTGGCGGCGGCGGCGGCGGCGGTTTCCCCTGACCCGGT
CTCCGACACGTTGTTACCACTAGCACCGTCGTCAGCGGTGACGGGCGGGG
CGGGGGGAATGGTGGCGCCTGGTGTGGGGCGGGAGGCCGGGGACGGAGGG
GCAGCGGGGATGACGAGAGGCCTGGCGGCGGCGGCTGCTGCCGAAGGCAA
GCAGCAATGGAGGGAGGGGGGTACGGTCGCCGCGATGAAGTCGAAGGAGC
AAGCGGTGCGGCGAAGAGAACGGAATCGCGTCCTCGCGAGAGAAACTCGT
TTGAGGAAGAAGTTTTTCTACGAGTCTCTCCTACAGCGCATGGCGGCCCT
GCGCAAAGACAACCGAAAATTCAAGACCATTCTCAGGGATAGGCTGGGCG
AGCGGGCGCAGCAGGTGGTTTTCGATTGCACTTCAGAGTTGTCCCGACAA
GTCACAGTCGGCAGCATGGAGGACGCCGAGGGGACGGACGGGGGCGTGAC
GATGACGATGGTGATGACGGACATGCAAGTTGATGCAGAAGTCGCCGCTG
CGGCGAAGGGCGGGGGGGGTAAGGGTACGGGGTCGAGCAAACGCGGCGGC
GGCGCCGGTGGTGGTGGTGGTTGCGCCGGCGCTTCCACGCGGGGTCTTAG
CAGGCCCGATTACCGCCTCGTGAAGAGCATCGAGATGGTTAGTGGATCGA
ACGTCGAGTGA back to top
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