EsuBft100_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft100_5a-0001
Unique NameEsuBft100_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:119387..123201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRU1
ProteomeIdEsuBft100_5
Protein domainsSSF47473
Protein domainsIPR002048
Protein domainsIPR011992
Protein domainsSignalP-noTM
Protein domainsIPR018247
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length233
Hectar predicted targeting categoryno signal peptide or anchor
Evalue1.54e-05
EggNOG OGs28NP9@1|root,2QV8Y@2759|Eukaryota
Ec32 ortholog descriptionPutative sodium calcium exchanger
Ec32 orthologEc-08_002440.1
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005911,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0006950,GO:0006970,GO:0008150,GO:0008324,GO:0009506,GO:0009628,GO:0009651,GO:0009987,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0016020,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0030054,GO:0031090,GO:0033554,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055044,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071214,GO:0071470,GO:0071472,GO:0072507,GO:0072511,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098805,GO:0099516,GO:0104004
Descriptioncalcium:sodium antiporter activity
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0005509
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft100_5aEsuBft100_5aEctocarpus subulatus male Bft15bgeneScaffold_441 119387..123201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_5a-0001EsuBft100_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 119387..119563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_5a-0001-exonagat-exon-35277Ectocarpus subulatus male Bft15bexonScaffold_441 119387..120356 +
EsuBft100_5a-0001-exonEsuBft100_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 121585..121635 +
EsuBft100_5a-0001-exonagat-exon-35278Ectocarpus subulatus male Bft15bexonScaffold_441 121893..123201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_5a-0001-cdsEsuBft100_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 119387..119563 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_5a-0001-exonagat-three_prime_utr-106Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 119564..120356 +
EsuBft100_5a-0001-exonagat-three_prime_utr-107Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 121585..121635 +
EsuBft100_5a-0001-exonagat-three_prime_utr-108Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 121893..123201 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft100_5a-0001 ID=EsuBft100_5a-0001|Name=EsuBft100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2330bp|location=Sequence derived from alignment at Scaffold_441:119387..123201+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGTCAAATTCTGGTTGCCTGCTGGACGAACCACCTTTTGCTACT
CAAGGAGCTGACTGCTATCTTCGAAAAGATCGACACGGACCGGTCGGGTC
AAATCGACTTCGATGAGTTCGTGACCGGTGTGGCTAAGTTCGTCCTGGAG
AAAAGTCCGACCGGTACCATCAGGTAAAGCAACGCCTACTATACTGTTGG
ACACTACAACTTGATGGTGTTTGGACTGCTTTCGTCGTGTCTTTACAAGC
AGATACTGCTGTCTGTGTGCTCCTGTTGTGCAAGCGTTGGTCCTTGGACA
CTTTGATCGCCTATGCTGACGCGCTCACTGGGTACCATCTGCCCTTTTTT
CGTGAGTAGCTTTTTCGGCTTGGGCTTCGCCGTTTTAGAACCATATACCT
TTTGTTTTCGTTGAACCGGAATGGCTTACTGAACCTACCCGTTTCCAGCC
AGGACTCGTCACGTGTTAAATGTGGCTCTCTCACTAGCCAACTAAGTTTT
TCTGGCCATTTCTCCGTCTCAGCAACCCTCCGCCGGCAGCAATCGACGAA
GCGGCGGATGACGGTGATTCCGAAGAGCACGAAGAGGTCAGAACTATTCG
CAGTTTCATATGTATGTCATGTTTTTCGAAACAAGAAAGTCTTGAATCGT
ATCTGATTCGAATCAAGTTCTGCTCAGCAGCTTGTGGAAGTAGGCCCGTG
AGCCCGTACTGTATTATCTTGGTAAATAATGGTCGAGATTTTGCTGCATT
GGATTCTGCGAGAACTTTTTGCCCTTGTATCGAACAGCAGTTGTTTCGCA
CTTCGTACATTGCCTCCCTGTGTGTCGTGTCCCCTTGAATCTGTACGGTG
TTATGTCATAGATGCCGGAGGATCTGGCACACCTCAAACCAGAGGAACAG
CAGTACCACGTCAAGATGCGCGCGGCTTACCTCATGACGGTCGGGACAGC
CCTCGTGCTCATTTTCTCAGGTGTGTCGATTCGCTGGTTGCATTCTTTAC
CTTGTACGATGTACATACAGGGCGGTAATGGCTGTGATGTCCTTGCGAAA
CACATTCAGGGTGGTCGACGGAGTTATGGTGCTCTCCCTCTACCCGCTGT
CTCTCATGGTGGTGGCTGGGTTGGAGGCGTGTGGCTGGGATTGATTCGCT
CCTACACCCACACCGTTGTGTTTGGTGCATGCAACGAGTCATCTCGTGCA
CATGAATCGTGGAGTAACAAATACGGCGTCCATTGTTTTGTTTGTTCTTT
CTTGGCGCATCGTGTGAAGAGTGAAGACAGCAGTGACTGACTTCTTGAAA
ACAACCCCTTTCACGCAGAACACCAACCGGTTCCATGTTCATACGCGCAA
CTATGCCGCACTCGAATGTTTACCTCTTGTACATGTGGTGTTTACACACT
CCGAGCCTTGTCGCTGTGAGTGGGTTGTAGGGTAGGAAGCACGCGTAATA
CGTATGGATGATTTGTACATCATACATTGCACGGTTGTTGATTTTCGTCG
GGCGCAGGGCAATGCCACATTGGTTGGTGCTCATGGCTTCGATGGTCGTG
TCGTTTTTACGACGCTTCTCGTATATTGCTATTTCGTGTTCCTTCGTTAG
GCTCCTCATGAAATGTACCATTTCAGTCCCGTTAGAACAGCCTCGGTAGA
GCAAGTACGCCTCACCACCTAGGGTGTCTCTTTGGCTGTTGGCGTTCTTC
CCTCATGTAGCCTTCATTGTTTTCCTCGCGTGACAAAGGTCTTTCGAGAC
CGTGCTGTTGGTTTGCCATGTTACCGCTCTTAGGACTGCGGAGTATTGTT
CATACCACGGGCGGTGATCGGATGTTCCGAAGTCGGGGGGGGGGGGGGGG
GGGGGGGGGCGGGCGGCGTATTTGACGTTGTGCTTGGTTATGTTGGACCG
CCGCCAGCAGCAGCAGCAGTTTAGAACAGCTTGTTTACCTTAAAACCAAG
AATAGTTTACGTACCGTAGCACCTGTTTTCCTTTGCCGATAGGATGCCGG
CGTGTGCTCATCAAACCTGAGTACTTGACCTCAAGTGCGCAGCCGATTTC
TTCGCCCACCAAACAGGCTCAAGTGGGTGAGTCAGGGTACGCACCGAGAG
ACGGTTCGCGTTGAGAGGGGTCAAATGGTCGCATTATCCTTACGTGTAGC
TGAACCCGATAAGAAAGCGAAGTGTGGGTTTGGATATGCAGAATTGAGGA
CTTTTTACGCCTTACCCTACATTGTAGAAAGCAGTAAAATGTTGTGAACT
GTTGTAGTCTAGCTGCTTCGAACAAATCTACTTCCAACAAGAACTGCACG
TACATGGTCCACAATATTCTCTCAAGTCAT
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protein sequence of EsuBft100_5a-0001

>EsuBft100_5 ID=EsuBft100_5|Name=EsuBft100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MTRQILVACWTNHLLLLKELTAIFEKIDTDRSGQIDFDEFVTGVAKFVLE
KSPTGTIR
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mRNA from alignment at Scaffold_441:119387..123201+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft100_5a-0001 ID=EsuBft100_5a-0001|Name=EsuBft100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3815bp|location=Sequence derived from alignment at Scaffold_441:119387..123201+ (Ectocarpus subulatus male Bft15b)
ATGACTCGTCAAATTCTGGTTGCCTGCTGGACGAACCACCTTTTGCTACT
CAAGGAGCTGACTGCTATCTTCGAAAAGATCGACACGGACCGGTCGGGTC
AAATCGACTTCGATGAGTTCGTGACCGGTGTGGCTAAGTTCGTCCTGGAG
AAAAGTCCGACCGGTACCATCAGGTAAAGCAACGCCTACTATACTGTTGG
ACACTACAACTTGATGGTGTTTGGACTGCTTTCGTCGTGTCTTTACAAGC
AGATACTGCTGTCTGTGTGCTCCTGTTGTGCAAGCGTTGGTCCTTGGACA
CTTTGATCGCCTATGCTGACGCGCTCACTGGGTACCATCTGCCCTTTTTT
CGTGAGTAGCTTTTTCGGCTTGGGCTTCGCCGTTTTAGAACCATATACCT
TTTGTTTTCGTTGAACCGGAATGGCTTACTGAACCTACCCGTTTCCAGCC
AGGACTCGTCACGTGTTAAATGTGGCTCTCTCACTAGCCAACTAAGTTTT
TCTGGCCATTTCTCCGTCTCAGCAACCCTCCGCCGGCAGCAATCGACGAA
GCGGCGGATGACGGTGATTCCGAAGAGCACGAAGAGGTCAGAACTATTCG
CAGTTTCATATGTATGTCATGTTTTTCGAAACAAGAAAGTCTTGAATCGT
ATCTGATTCGAATCAAGTTCTGCTCAGCAGCTTGTGGAAGTAGGCCCGTG
AGCCCGTACTGTATTATCTTGGTAAATAATGGTCGAGATTTTGCTGCATT
GGATTCTGCGAGAACTTTTTGCCCTTGTATCGAACAGCAGTTGTTTCGCA
CTTCGTACATTGCCTCCCTGTGTGTCGTGTCCCCTTGAATCTGTACGGTG
TTATGTCATAGATGCCGGAGGATCTGGCACACCTCAAACCAGAGGAACAG
CAGTACCACGTCAAGATGCGCGCGGCTTACCTCATGACGGTCGGGACAGC
CCTCGTGCTCATTTTCTCAGGTAAACCTCGCAGCTGTCCACCTGGCAGAC
GGGCCCCTTCTCATGATCTACGCCAATTTCGGAGCAAGTTTCTGTCCACG
GACAACCTTCGTAGTGCAACACGGAATTTACAACCCTTCAGCACTATGCA
TACTAGCGAATCAAGCAGGGTTGGTTTAGAATCCCTCCTGCTGTTGTTCG
TTGAGCATGGTTTGTTCGACGCTCATGACCAGATAGATAGGGGCAAGGAA
GCATCGTAGTGCTATAGTGTAGTCCGACTGGAACTTCGGGCGTGCTGCTT
GAAGGGCTCGTGTTGCGCGTAATACAGTAGAAAAGCACAGAATTGTCCCC
CTGCACCATCCAAGCGCGCTCAATTCATGATTTGGGACCCTGACATTATT
TGAAACACGTTGCAAATGGACGACGGGCAGGTATCTATGCAACAGCACGA
CGAATCGATAACCCTGTGTCATATTGGGGAGGTCTGCGAACTGTGGCGGG
CCGCCGTTAACCCCCCTGGACCTAGACAGCTGCAGAGCTGCCGTGATGTG
CTCTTGCTGAGCACTTGTATCTCTTCCCCTCGTCGTCCCGTATCCCAAAA
TACTAGAGCGAAACAGAGACAGTTCTTACAATTTCTCAAGGCCAGCCGTG
CGCGGTGACCAGGCTTGTCCTCCAAGAAGGGTTGCGCAAGGCCCGGGCGC
ACCCGAAGAGCGCGCGCCAATGCACAAGGCAACTCTTACATGCTTTTGAC
GTTGGTGATGCCTTTTGTTGCGACAGATCCCATGGTGGACGTGCTCGGAG
TCCTCGGCGACCGCACGGGAATTTCGTCCTTCTACATCTCGTTCGTCTTG
GCGCCGCTCGCGTCCAACGCTAGCGAGCTCATTGCCGCCTTCAATTACTC
TCTCAAGAAGACCAGTCGCACGATCGTCATCTCTTTCGCAGCACTGCAGG
CGAGAGAGACTGGGGATAAAAATTTCGTTGCTTGCTCCCACTGTGTGCGT
TTGAAATGTGCGTTGTTTGTCTTGGATGTTCGCCACGCTTTCCCCGGTCA
CCAGTTCTCATCTTTTTGCAAGATTCGCACCACATATGCCCCCTAACGTA
AATGGAGTGCCTCCCTCCTCTGAATATATTCCAGGGCGCCGCATGCATGA
ACAACACGTTCTGCCTGGGTGTGTTCATGTTTCTCATCTACTTCCGGAAC
CTAGCATGGGAGTTCAGCGCGGAAACGGTCACCATCCTCCTAGTGCAGGT
GTGTCGATTCGCTGGTTGCATTCTTTACCTTGTACGATGTACATACAGGG
TATGTTGATCGTTGATCTTGTTCTGTCATTGTGATGCGAATGCTGCTGTA
TGTGCCTGCAAGCAGCAAGCACTGCTAGAATCTGGACAATCCGGACAATC
CACGGCATGCCCCCCCTGTGCGGTTTCGCTTGCGACTTACATGTAGCCAC
CGTCGCATCTCGCCTTGCTGGATTGAATGTGGTGTTGCCCGCTGAACTCA
CATGTGGTAACGGTCGCGTTTTGTTTGTACGTCGTTGTCGGCTCGTGTGA
CTGCAGGCGGTAATGGCTGTGATGTCCTTGCGAAACACATTCAGGGTGGT
CGACGGAGTTATGGTGCTCTCCCTCTACCCGCTGTCTCTCATGGTGGTGG
CTGGGTTGGAGGCGTGTGGCTGGGATTGATTCGCTCCTACACCCACACCG
TTGTGTTTGGTGCATGCAACGAGTCATCTCGTGCACATGAATCGTGGAGT
AACAAATACGGCGTCCATTGTTTTGTTTGTTCTTTCTTGGCGCATCGTGT
GAAGAGTGAAGACAGCAGTGACTGACTTCTTGAAAACAACCCCTTTCACG
CAGAACACCAACCGGTTCCATGTTCATACGCGCAACTATGCCGCACTCGA
ATGTTTACCTCTTGTACATGTGGTGTTTACACACTCCGAGCCTTGTCGCT
GTGAGTGGGTTGTAGGGTAGGAAGCACGCGTAATACGTATGGATGATTTG
TACATCATACATTGCACGGTTGTTGATTTTCGTCGGGCGCAGGGCAATGC
CACATTGGTTGGTGCTCATGGCTTCGATGGTCGTGTCGTTTTTACGACGC
TTCTCGTATATTGCTATTTCGTGTTCCTTCGTTAGGCTCCTCATGAAATG
TACCATTTCAGTCCCGTTAGAACAGCCTCGGTAGAGCAAGTACGCCTCAC
CACCTAGGGTGTCTCTTTGGCTGTTGGCGTTCTTCCCTCATGTAGCCTTC
ATTGTTTTCCTCGCGTGACAAAGGTCTTTCGAGACCGTGCTGTTGGTTTG
CCATGTTACCGCTCTTAGGACTGCGGAGTATTGTTCATACCACGGGCGGT
GATCGGATGTTCCGAAGTCGGGGGGGGGGGGGGGGGGGGGGGGGCGGGCG
GCGTATTTGACGTTGTGCTTGGTTATGTTGGACCGCCGCCAGCAGCAGCA
GCAGTTTAGAACAGCTTGTTTACCTTAAAACCAAGAATAGTTTACGTACC
GTAGCACCTGTTTTCCTTTGCCGATAGGATGCCGGCGTGTGCTCATCAAA
CCTGAGTACTTGACCTCAAGTGCGCAGCCGATTTCTTCGCCCACCAAACA
GGCTCAAGTGGGTGAGTCAGGGTACGCACCGAGAGACGGTTCGCGTTGAG
AGGGGTCAAATGGTCGCATTATCCTTACGTGTAGCTGAACCCGATAAGAA
AGCGAAGTGTGGGTTTGGATATGCAGAATTGAGGACTTTTTACGCCTTAC
CCTACATTGTAGAAAGCAGTAAAATGTTGTGAACTGTTGTAGTCTAGCTG
CTTCGAACAAATCTACTTCCAACAAGAACTGCACGTACATGGTCCACAAT
ATTCTCTCAAGTCAT
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Coding sequence (CDS) from alignment at Scaffold_441:119387..123201+

>EsuBft100_5a-0001 ID=EsuBft100_5a-0001|Name=EsuBft100_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_441:119387..123201+ (Ectocarpus subulatus male Bft15b)
ATGACTCGTCAAATTCTGGTTGCCTGCTGGACGAACCACCTTTTGCTACT
CAAGGAGCTGACTGCTATCTTCGAAAAGATCGACACGGACCGGTCGGGTC
AAATCGACTTCGATGAGTTCGTGACCGGTGTGGCTAAGTTCGTCCTGGAG
AAAAGTCCGACCGGTACCATCAGGTAA
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