EsuBft100_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft100_3a-0001
Unique Name	EsuBft100_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_441	contig	Scaffold_441:108531..110349 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6669.EFX68856
ProteomeId	EsuBft100_3
Protein domains	IPR004875
Protein domains	PTHR19303
Owner	apollo_admin@sb-roscoff.fr
Note	jerky protein homolog-like os:homo sapiens gn:jrkl pe:2 sv:2 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	1482
Evalue	1.19e-57
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota,38HJW@33154\|Opisthokonta,3BCG5@33208\|Metazoa,3CXR0@33213\|Bilateria,420II@6656\|Arthropoda
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Jerky protein homolog-like
COG category	BD

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft100_3a	EsuBft100_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_441 108531..110349 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_3a-0001-exon	EsuBft100_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 108531..109302 -
EsuBft100_3a-0001-exon	agat-exon-35276	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 109640..110349 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_3a-0001-exon	agat-three_prime_utr-104	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 108531..109043 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_3a-0001-cds	EsuBft100_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_441 109044..109302 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_3a-0001	EsuBft100_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_441 109044..110349 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:108531..110349-
coding sequence from alignment at Scaffold_441:108531..110349-

spliced messenger RNA

>EsuBft100_3a-0001 ID=EsuBft100_3a-0001|Name=EsuBft100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1482bp|location=Sequence derived from alignment at Scaffold_441:108531..110349- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACATCAGGGCCCTTTGCGAGAAGTACCCGGCTAGGTTCATCTT
CAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGT
ACCTTTCCACCTTGGAGGATCGGACGACGGCGCGGGGCTCAAAGAGCATG
CACTTCAAGGACCGACTGTCTGCCATCATGTGCTGCAATGCCGACGGCAC
TGCGAAGGTTGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCT
TCAAGAACGGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGG
TCCGACTCCGCGACGTTTCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTT
CGTTCGGCGCTTCAATCACGAACCTGCGCTGCTGCTGATGGACGGCTGTT
CGTCTCACAGTGATTTAGTGGACGATCGCGGGCAAGTTACCGTCAAGACC
TACCCTCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGGGGGTCAT
CGCCAAGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACAT
CAACCATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAG
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCG
GGACGCCGCTGAACTTCTCCAGAAAGAATGGGCCAGCGTCACCGCCCAAG
ACATCGCCAGACCCNTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTG
GACGAGGAGATCAGCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAA
GCCGGTCGCGGGGGAAGAGGTGGCCGCGATTCAGGGGTGGGCTACCATCG
AGGACGACGAGGAGGTGGTAGAGGCTTTTCGATTGGACGCGGTGGAAGAC
ATGACAGCACTGCTGGCTGGAACGAACTTATCTACCGGCGGCGACGACGA
GGAGGACGAACAGGACTAGGGAGGCGGCGGTGAGAACACGGGGCGCGAGC
GCCGTGCCCCACGTGCGCCACCGGGTTATGAAGAACTGTCGTCGCACTTC
GGCGCCCTGGAAGTGGCAGCAGAGGGCAGTGGCAACGGAGACGCGGCGTC
CTACCTAACGAAAGTGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGC
GGGTGCGCCAGACAGACATTAGAGGATTTGTCGCGACGTAGAGTTCATGG
TTGTTTCTTTTTCTTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTA
ATTTTTTTTCTCGCAACATCGAAGCGGGTACGCCAGGCAGACACTCCAGT
GTCGCGACGTAGTTTGGGGGGGAGATACAACTGTAGTGCAGTAATATTGA
TTTTTGTTTTCTTGCAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTTTTG
TCTTTTGTATCTTACAACATCGAAGGAGGGGCTCTAGGGCTTACATATAG
CTACGTCCACTCTGTACGAACGGGAGCTTTAC

protein sequence of EsuBft100_3a-0001

>EsuBft100_3 ID=EsuBft100_3|Name=EsuBft100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=322bp
MEDIRALCEKYPARFIFNVDETGLQWKLMPRRTYLSTLEDRTTARGSKSM
HFKDRLSAIMCCNADGTAKVDMAIIGRAKEPRCFKNGGSPLKYFSQTNAW
SDSATFLKWWLEVFLPFVRRFNHEPALLLMDGCSSHSDLVDDRGQVTVKT
YPPLCTAVHQPMDLGVIAKTKVNYRKELLDVKTSTMLVADTLRAQAKARK
MKAGTMGLAQGHQPHVRDAAELLQKEWASVTAQDIARPXQDAQKQGSRVV
DEEISELLAELNIEPGKPVAGEEVAAIQGWATIEDDEEVVEAFRLDAVED
MTALLAGTNLSTGGDDEEDEQD

mRNA from alignment at Scaffold_441:108531..110349-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_3a-0001 ID=EsuBft100_3a-0001|Name=EsuBft100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1819bp|location=Sequence derived from alignment at Scaffold_441:108531..110349- (Ectocarpus subulatus male Bft15b)
ATGGAGGACATCAGGGCCCTTTGCGAGAAGTACCCGGCTAGGTTCATCTT
CAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGT
ACCTTTCCACCTTGGAGGATCGGACGACGGCGCGGGGCTCAAAGAGCATG
CACTTCAAGGACCGACTGTCTGCCATCATGTGCTGCAATGCCGACGGCAC
TGCGAAGGTTGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCT
TCAAGAACGGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGG
TCCGACTCCGCGACGTTTCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTT
CGTTCGGCGCTTCAATCACGAACCTGCGCTGCTGCTGATGGACGGCTGTT
CGTCTCACAGTGATTTAGTGGACGATCGCGGGCAAGTTACCGTCAAGACC
TACCCTCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGGGGGTCAT
CGCCAAGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACAT
CAACCATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAG
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCG
GGACGCCGCTGAACTTCTCCAGAAAGAATGGGCCAGCGTCACCGCCCAAG
ACATCGCCAGGTGAGGTTTGAACATGTTATATCGCTGTTTTAAATGTGCA
CATGCTCGCGCAAGTGCGCATGGCTTTGGTGGTACGTTACGTGGGTAAGG
TTGTACGGATAGGTTTTATTTTTCGACTGAATACTCCCGCAACCGCAAAT
CTCCTTGTTTCTTTGCTAAAAAAAGGCCCTCCCTCGCATCCCTATGAGTC
ATTGTTTGTCACTGGGTTCGTCTAACATCGGTTCTCCACCCAAACACGGG
TGCATCACAATTTCTGCGCGACCTGGCCAGGTGCTTTGTCAAAGCCGAGA
CGCTTGCGGAGGAGATGGCGGCTGAGCTCACCAAGCAACACGGAAAGACC
CNTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTGGACGAGGAGATCA
GCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAAGCCGGTCGCGGGG
GAAGAGGTGGCCGCGATTCAGGGGTGGGCTACCATCGAGGACGACGAGGA
GGTGGTAGAGGCTTTTCGATTGGACGCGGTGGAAGACATGACAGCACTGC
TGGCTGGAACGAACTTATCTACCGGCGGCGACGACGAGGAGGACGAACAG
GACTAGGGAGGCGGCGGTGAGAACACGGGGCGCGAGCGCCGTGCCCCACG
TGCGCCACCGGGTTATGAAGAACTGTCGTCGCACTTCGGCGCCCTGGAAG
TGGCAGCAGAGGGCAGTGGCAACGGAGACGCGGCGTCCTACCTAACGAAA
GTGAAGATGTCGATGATCGCAGCGCATTCCGCTAGGCGGGTGCGCCAGAC
AGACATTAGAGGATTTGTCGCGACGTAGAGTTCATGGTTGTTTCTTTTTC
TTGCGGTTCGCTTCCTGTCGTGTACTTGTAGTTTTTAATTTTTTTTCTCG
CAACATCGAAGCGGGTACGCCAGGCAGACACTCCAGTGTCGCGACGTAGT
TTGGGGGGGAGATACAACTGTAGTGCAGTAATATTGATTTTTGTTTTCTT
GCAGTGCGCTTCCTGTCGTGTTTCTTTTTCTGTTTTGTCTTTTGTATCTT
ACAACATCGAAGGAGGGGCTCTAGGGCTTACATATAGCTACGTCCACTCT
GTACGAACGGGAGCTTTAC

Coding sequence (CDS) from alignment at Scaffold_441:108531..110349-

>EsuBft100_3a-0001 ID=EsuBft100_3a-0001|Name=EsuBft100_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=969bp|location=Sequence derived from alignment at Scaffold_441:108531..110349- (Ectocarpus subulatus male Bft15b)
ATGGAGGACATCAGGGCCCTTTGCGAGAAGTACCCGGCTAGGTTCATCTT
CAACGTCGACGAGACAGGCCTCCAGTGGAAGCTCATGCCCAGGCGCACGT
ACCTTTCCACCTTGGAGGATCGGACGACGGCGCGGGGCTCAAAGAGCATG
CACTTCAAGGACCGACTGTCTGCCATCATGTGCTGCAATGCCGACGGCAC
TGCGAAGGTTGACATGGCCATCATCGGGAGGGCAAAGGAACCCCGCTGCT
TCAAGAACGGGGGTTCACCTCTGAAGTACTTCTCGCAGACCAACGCGTGG
TCCGACTCCGCGACGTTTCTCAAGTGGTGGCTTGAAGTCTTCCTCCCGTT
CGTTCGGCGCTTCAATCACGAACCTGCGCTGCTGCTGATGGACGGCTGTT
CGTCTCACAGTGATTTAGTGGACGATCGCGGGCAAGTTACCGTCAAGACC
TACCCTCCGCTGTGCACCGCCGTACACCAACCCATGGATTTGGGGGTCAT
CGCCAAGACGAAGGTCAACTACAGGAAGGAGCTGCTCGATGTGAAGACAT
CAACCATGTTGGTGGCTGACACACTTCGCGCCCAGGCCAAAGCCCGCAAG
ATGAAGGCCGGGACAATGGGGCTAGCGCAAGGGCACCAACCTCACGTGCG
GGACGCCGCTGAACTTCTCCAGAAAGAATGGGCCAGCGTCACCGCCCAAG
ACATCGCCAGACCCNTGCAGGACGCGCAGAAGCAGGGATCCCGCGTCGTG
GACGAGGAGATCAGCGAACTGTTGGCAGAACTCAACATCGAACCCGGAAA
GCCGGTCGCGGGGGAAGAGGTGGCCGCGATTCAGGGGTGGGCTACCATCG
AGGACGACGAGGAGGTGGTAGAGGCTTTTCGATTGGACGCGGTGGAAGAC
ATGACAGCACTGCTGGCTGGAACGAACTTATCTACCGGCGGCGACGACGA
GGAGGACGAACAGGACTAG