EsuBft100_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft100_2a-0001
Unique Name	EsuBft100_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_441	contig	Scaffold_441:97503..99172 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft100_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	167
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft100_2a	EsuBft100_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_441 97503..99172 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_2a-0001-exon	EsuBft100_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 97503..99172 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_2a-0001-exon	agat-three_prime_utr-103	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 97503..98608 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_2a-0001-cds	EsuBft100_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_441 98609..99151 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_2a-0001-exon	agat-five_prime_utr-63	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_441 99152..99172 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_2a-0001	EsuBft100_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_441 98609..99151 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:97503..99172-
coding sequence from alignment at Scaffold_441:97503..99172-

spliced messenger RNA

>EsuBft100_2a-0001 ID=EsuBft100_2a-0001|Name=EsuBft100_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1670bp|location=Sequence derived from alignment at Scaffold_441:97503..99172- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCCGCGCTGATGTGCTCGAGATGGTGCGGAAGGATCCCGTGTTGGAGGA
GGAGATGAGGACAATGCTGGGGGTGCAAGGGTTGGAGGGCGTAGCCGCAG
CTCACGCGGAAAACACTCGCGCGATGGCCGCTTCGTTGGCCGCGTTGAAG
GGCAAAAGCCAGAGTAACATCGGCCGCGTTGCGTATACGACCGTGCTGGC
CGCGGTGGCTGGAGCTGGGGAGCACACTTGCAGCCCTACCGATCCGTGCA
ACCCCGCAGAGCGGTGCCCTCCCGCTGAGCCGCAGGGTGGCGTGAGCTTC
GCCCAGCGAGCGGAGAGCCTTGGGGTGAGGGAGAAAACGTTCCGCGCGGC
GTATGTCCGGATGCACCATACCGACCATACTATCCCCCCGCCGCAAGCTC
TGGAAGAGGGGCGCTACTGCTGGACTACACGCAAGACAAGGAGCGACGCG
ACGGACGAACGTGTGCTGGAGTTAGCGATCCGGTTCTGGCATTGCGACGA
CGTCTCGCGTGCATCGGGAGATTCACCAGTTCATGGGGGCGGAGAACCAG
GACCAAAGGCTTAGAAGTAGCCTAGGGGTGGAACCAGCAGATAGTAGAGT
CGTGGTAGCGGCAGGGGATGAACACGCGAACCCTGGCCCCGAAGTAGTCG
GACCAGCCCCGCGCCCCGAAAGGGTTACGAGAAATACACGTGCAGTGTTC
GCAGGGAGTCGGTAGCATTTTGAGTGCCTCACTTGGTCGTTTTAATGTAT
TTTGATCTCGTTCGTGGTCATTGCTGGTGGTGGTGGTGGTGGTGGTGGTG
CTGCTGCTGTTTTGTGTTGTGTTGCTGTGTATAGCATGCTGTGAGTTGTT
GTGTGCCGCCAGTGCTGTTTCGTTGTCGTTGAGGAAACTAACGGAGAAAC
CAGATTGTACTCTTTGGGTGTTTTCACCGTCAAAAACAACCACACTTCAA
CAAATTCAATTAGATTAGTACTTTAAACAAATTTAGTATGAGTATCGTAG
CAATTTTGTCATGCATAACAACGTGCATGTCCCACGCACATCATTCACGG
CCGTCAGCGCGCCATGTTGCCCGCGTAGAAGCGCATAATAACGAGAGAAA
ACGGATGAAAACACCGGGGGGGGACAAAACCGTCCCATCCCCGGGTTTGC
ATTATTCCATTCATTAAGTCATATAAACTGAGAAAGTCGTTGAAACCCCC
ACTTCCCTACCTCCGTCACCAAATCTGACCACGGGAATCGTGCACACATG
GGTAGAGGTGACTACAACCAACTTTTCAGAGCTTAGCGGGTTCGGTATTC
GCTCAATCTCAACTTCGGGCACACGATCTCGGAAGGCGCCATAGGAGGGG
GGGGCTGGACCACCCCATGTACCCACTTATGTCTATATTTTGTCCCACTT
TTGTCCAAATTGTACCCACATTTGTCCATTACGGACGGCGGAAATCGAGC
TGAAATTGACCTCCACGTCACCGCACGGCAGAACATCGAATGGCCTCGGA
GCGTCTCAGAACCTCCCAACATCGTATCCATGGCATCTTTCGTATCCATG
GCTGCCGACTGCGGACCGACCGCGGAGGAACATGTCAGACACATGCCAGG
CGCCTTCGGTACCGGCACGGGAGAATACCAGGCACGGGAAGATGCCCGCG
GCAAGCCCGGCAAGCAGCGC

protein sequence of EsuBft100_2a-0001

>EsuBft100_2 ID=EsuBft100_2|Name=EsuBft100_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MVRKDPVLEEEMRTMLGVQGLEGVAAAHAENTRAMAASLAALKGKSQSNI
GRVAYTTVLAAVAGAGEHTCSPTDPCNPAERCPPAEPQGGVSFAQRAESL
GVREKTFRAAYVRMHHTDHTIPPPQALEEGRYCWTTRKTRSDATDERVLE
LAIRFWHCDDVSRASGDSPVHGGGEPGPKA

mRNA from alignment at Scaffold_441:97503..99172-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_2a-0001 ID=EsuBft100_2a-0001|Name=EsuBft100_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1670bp|location=Sequence derived from alignment at Scaffold_441:97503..99172- (Ectocarpus subulatus male Bft15b)
CGCCGCGCTGATGTGCTCGAGATGGTGCGGAAGGATCCCGTGTTGGAGGA
GGAGATGAGGACAATGCTGGGGGTGCAAGGGTTGGAGGGCGTAGCCGCAG
CTCACGCGGAAAACACTCGCGCGATGGCCGCTTCGTTGGCCGCGTTGAAG
GGCAAAAGCCAGAGTAACATCGGCCGCGTTGCGTATACGACCGTGCTGGC
CGCGGTGGCTGGAGCTGGGGAGCACACTTGCAGCCCTACCGATCCGTGCA
ACCCCGCAGAGCGGTGCCCTCCCGCTGAGCCGCAGGGTGGCGTGAGCTTC
GCCCAGCGAGCGGAGAGCCTTGGGGTGAGGGAGAAAACGTTCCGCGCGGC
GTATGTCCGGATGCACCATACCGACCATACTATCCCCCCGCCGCAAGCTC
TGGAAGAGGGGCGCTACTGCTGGACTACACGCAAGACAAGGAGCGACGCG
ACGGACGAACGTGTGCTGGAGTTAGCGATCCGGTTCTGGCATTGCGACGA
CGTCTCGCGTGCATCGGGAGATTCACCAGTTCATGGGGGCGGAGAACCAG
GACCAAAGGCTTAGAAGTAGCCTAGGGGTGGAACCAGCAGATAGTAGAGT
CGTGGTAGCGGCAGGGGATGAACACGCGAACCCTGGCCCCGAAGTAGTCG
GACCAGCCCCGCGCCCCGAAAGGGTTACGAGAAATACACGTGCAGTGTTC
GCAGGGAGTCGGTAGCATTTTGAGTGCCTCACTTGGTCGTTTTAATGTAT
TTTGATCTCGTTCGTGGTCATTGCTGGTGGTGGTGGTGGTGGTGGTGGTG
CTGCTGCTGTTTTGTGTTGTGTTGCTGTGTATAGCATGCTGTGAGTTGTT
GTGTGCCGCCAGTGCTGTTTCGTTGTCGTTGAGGAAACTAACGGAGAAAC
CAGATTGTACTCTTTGGGTGTTTTCACCGTCAAAAACAACCACACTTCAA
CAAATTCAATTAGATTAGTACTTTAAACAAATTTAGTATGAGTATCGTAG
CAATTTTGTCATGCATAACAACGTGCATGTCCCACGCACATCATTCACGG
CCGTCAGCGCGCCATGTTGCCCGCGTAGAAGCGCATAATAACGAGAGAAA
ACGGATGAAAACACCGGGGGGGGACAAAACCGTCCCATCCCCGGGTTTGC
ATTATTCCATTCATTAAGTCATATAAACTGAGAAAGTCGTTGAAACCCCC
ACTTCCCTACCTCCGTCACCAAATCTGACCACGGGAATCGTGCACACATG
GGTAGAGGTGACTACAACCAACTTTTCAGAGCTTAGCGGGTTCGGTATTC
GCTCAATCTCAACTTCGGGCACACGATCTCGGAAGGCGCCATAGGAGGGG
GGGGCTGGACCACCCCATGTACCCACTTATGTCTATATTTTGTCCCACTT
TTGTCCAAATTGTACCCACATTTGTCCATTACGGACGGCGGAAATCGAGC
TGAAATTGACCTCCACGTCACCGCACGGCAGAACATCGAATGGCCTCGGA
GCGTCTCAGAACCTCCCAACATCGTATCCATGGCATCTTTCGTATCCATG
GCTGCCGACTGCGGACCGACCGCGGAGGAACATGTCAGACACATGCCAGG
CGCCTTCGGTACCGGCACGGGAGAATACCAGGCACGGGAAGATGCCCGCG
GCAAGCCCGGCAAGCAGCGC

Coding sequence (CDS) from alignment at Scaffold_441:97503..99172-

>EsuBft100_2a-0001 ID=EsuBft100_2a-0001|Name=EsuBft100_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_441:97503..99172- (Ectocarpus subulatus male Bft15b)
ATGGTGCGGAAGGATCCCGTGTTGGAGGAGGAGATGAGGACAATGCTGGG
GGTGCAAGGGTTGGAGGGCGTAGCCGCAGCTCACGCGGAAAACACTCGCG
CGATGGCCGCTTCGTTGGCCGCGTTGAAGGGCAAAAGCCAGAGTAACATC
GGCCGCGTTGCGTATACGACCGTGCTGGCCGCGGTGGCTGGAGCTGGGGA
GCACACTTGCAGCCCTACCGATCCGTGCAACCCCGCAGAGCGGTGCCCTC
CCGCTGAGCCGCAGGGTGGCGTGAGCTTCGCCCAGCGAGCGGAGAGCCTT
GGGGTGAGGGAGAAAACGTTCCGCGCGGCGTATGTCCGGATGCACCATAC
CGACCATACTATCCCCCCGCCGCAAGCTCTGGAAGAGGGGCGCTACTGCT
GGACTACACGCAAGACAAGGAGCGACGCGACGGACGAACGTGTGCTGGAG
TTAGCGATCCGGTTCTGGCATTGCGACGACGTCTCGCGTGCATCGGGAGA
TTCACCAGTTCATGGGGGCGGAGAACCAGGACCAAAGGCTTAG