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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRS0 |
| ProteomeId | EsuBft100_20 |
| Protein domains | PTHR24188 |
| Protein domains | IPR002110 |
| Protein domains | IPR020683 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | 26s proteasome non-atpase regulatory subunit 10 os:dictyostelium discoideum gn:psmd10 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1733 |
| Hectar predicted targeting category | other localisation |
| Evalue | 7.43e-79 |
| EggNOG OGs | COG0666@1|root,KOG4177@2759|Eukaryota |
| Ec32 ortholog description | Ankyrin repeat |
| Ec32 ortholog | Ec-08_002200.2 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K21440 |
| GOs | GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259 |
| Description | spectrin binding |
| COG category | I |
| BRITE | ko00000,ko04131 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0030139 |
| GO | 0002090 |
| GO | 0016328 |
| GO | 0033365 |
| GO | 2001257 |
| GO | 0098900 |
| GO | 0005200 |
| GO | 0030016 |
| GO | 0044092 |
| GO | 0022403 |
| GO | 0045747 |
| GO | 0005923 |
| GO | 0001885 |
| GO | 0003824 |
| GO | 0045664 |
| GO | 0086019 |
| GO | 0043001 |
| GO | 0021519 |
| GO | 0016881 |
| GO | 0051865 |
| GO | 0043270 |
| GO | 0051347 |
| GO | 0071599 |
| GO | 0042383 |
| GO | 0033157 |
| GO | 0007507 |
| GO | 0009925 |
| GO | 0060218 |
| GO | 0005515 |
| GO | 0001756 |
| GO | 0021521 |
| GO | 0005838 |
| GO | 0021520 |
| GO | 0050808 |
| GO | 0042221 |
| GO | 0009880 |
| GO | 0071709 |
| GO | 0042981 |
| GO | 0086002 |
| GO | 0044449 |
| GO | 0032414 |
| GO | 0008092 |
| GO | 0031324 |
| GO | 0030318 |
| GO | 0012505 |
| GO | 0010882 |
| GO | 0086070 |
| GO | 0051439 |
| GO | 0002474 |
| GO | 0048793 |
| GO | 0051279 |
| GO | 0010605 |
| GO | 0048471 |
| GO | 0021654 |
| GO | 0045202 |
| GO | 1902532 |
| GO | 0045685 |
| GO | 0043266 |
| GO | 0008284 |
| GO | 0061195 |
| GO | 0019899 |
| GO | 0031398 |
| GO | 0051726 |
| GO | 0035315 |
| GO | 0001570 |
| GO | 0072661 |
| GO | 0007409 |
| GO | 0000281 |
| GO | 0072660 |
| GO | 0004842 |
| GO | 0002027 |
| GO | 0005856 |
| GO | 0042803 |
| GO | 0007368 |
| GO | 0021986 |
| GO | 0002028 |
| GO | 0048546 |
| GO | 0031076 |
| GO | 0021508 |
| GO | 0060113 |
| GO | 0044304 |
| GO | 0086066 |
| GO | 0042325 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_20a-0001 ID=EsuBft100_20a-0001|Name=EsuBft100_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1733bp|location=Sequence derived from alignment at Scaffold_441:290541..292378- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTGGACACCATCCGCGATATTGACAGCTACTCCGCGCTCGACAAAGCC
ATTTGTTTTTGGCCACATTGACGTCGTTCGAGCACTTCTCAGACATGGGG
CGGACGTGAACGCTTGTGACGATGATTATTTTACTCCACTTCACCTTGCT
GCTCAAGAAGATCAGGCCGATGCGATTGATGCGTTGATCCAGGCAGGGGC
CAACACCGAGGCCAGCCGGGGCCGTCGGTGGACGCCCCTGTTCTCTGCGA
TGGAGTACTGCAGTATCAGCGCCATTTACACCCTCCTGCGGCACGGCGCA
TCCTTGACAGTGCAAGACACGGATGGAGACACGCCGTTGCACCGGGCGTG
CTACTGGCAGCATAAAGGCCTGGAGGCGACCGTGGGCCTCTTGCTGCGGT
CGGGAGCGGACGAAACAGCCGTGAATAGCGCTGACGAGACTCCCGCAGAT
TTGCTCGGTTATCTCGACGATGACGATGGTAAAAGATATTCCGAAGCGGA
GATCGAGCGGGTGCGGCTGTTGCTGGCTCGGGCTCCGACCAACCGAGCGT
GGCTTGGCCGTTGCTGGCTCGTGATGCTGCGCTCTTGCGCAAAGACAGGT
AGAGCTTCCACCGACGAAACCGTCGGTGCTGATGAAGATTCAAACGATGC
TGGTGACAGGAAGAGCGGAAAGTTCAAGGGGGTGAGGAGGGAGAATGGGG
AGAGCGCTGGTAGTTGGGTACGCTCTCGGATGAACGGCGCCGGCGAAGTT
GGAGTCGAGGGTGGGGCGGGAGGCTGGGCGAGCATTGTGGCCTCCGTGGT
AGGGCTGGAGCCGGAGAAGGTGTTCCGCTCGATTGTGGGCTTCCTGTGAA
GATAGACGGTGGTCTCGGGAGATCTCAGGAGATATTTACAGGCACGAGCC
CCACTTGTTGGGTATAGTTGGGGTGGTGGTACTCGTACCGAGGGCTCTGT
GCACCGATACACTGGCTGTGGCCTGTGGACATTACGTACGTATGCCTGAC
TAGAACGCGTGGCCCGTGCGTCGTTCCGATACCCGTGCTTCGATCAACAC
CGACATGACACCAACATAATTTGCTGTGTTTTTGCAAGGCACGAATTTTG
TGTTGGTTTAGCCTTTCTGCCTGCTTCTCTCATGTCTACCATGTCGCACA
GACAAACCGGGAAAATCAAATTTCAAATTTGCGACCCTCAAACTCACTTC
TAGCTGCCCTCTACCACCACCGCAACAGCATTGTAGAGTTTCCTCTTGCA
GGGTTAGACGTGTGATTTTAAAGAAGAGCTAACGGGAACCACATGTAAAT
CCGACAGTGTCTCTTGTCGCTCTTTTTTGTTCTGTTCCAAAAGGGAGCCG
GCCCCTCAAGCGCAGATCGATCGCTATCCACGAATTCTGATTTCCCGGCA
GTGCTAGCGCTGGCGCTCCTACCTCCGGGACCGGCGAGCGGAACACATCA
TTTTTTCTTGGTCGTGGTGGCTACCCACAAGGCCTTGCATCAAATCTGGG
CATGTTTTGTTTGCTGCCGCATTGTGGGATGGACAGACGAGGGTATCTGT
GGACGGGTAGAACACGAAAGGGGAAGCTTTTTAGGAGCGTTTTGTCTCAG
TCAAATGAGTGTTGACTGTCTAGCGCCGAGGGGCGGTTCTTGGGTTGGGT
AAATGGTGCTTAGATGCTAAGGTTACGCAACCGTCTTGCGGAATGTAGCA
GTACATTTGCTGAAGGCAGGACAATCCCAGACG back to topprotein sequence of EsuBft100_20a-0001 >EsuBft100_20 ID=EsuBft100_20|Name=EsuBft100_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=282bp
MWTPSAILTATPRSTKPFVFGHIDVVRALLRHGADVNACDDDYFTPLHLA
AQEDQADAIDALIQAGANTEASRGRRWTPLFSAMEYCSISAIYTLLRHGA
SLTVQDTDGDTPLHRACYWQHKGLEATVGLLLRSGADETAVNSADETPAD
LLGYLDDDDGKRYSEAEIERVRLLLARAPTNRAWLGRCWLVMLRSCAKTG
RASTDETVGADEDSNDAGDRKSGKFKGVRRENGESAGSWVRSRMNGAGEV
GVEGGAGGWASIVASVVGLEPEKVFRSIVGFL back to topmRNA from alignment at Scaffold_441:290541..292378- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_20a-0001 ID=EsuBft100_20a-0001|Name=EsuBft100_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1838bp|location=Sequence derived from alignment at Scaffold_441:290541..292378- (Ectocarpus subulatus male Bft15b)
ATGTGGACACCATCCGCGATATTGACAGCTACTCCGCGCTCGACAAAGCC
ATTTGTTTTTGGCCACATTGACGTCGTTCGAGCACTTCTCAGACATGGGG
CGGACGTGAACGCTTGTGACGATGATTATTTTACTCCACTTCACCTTGCT
GCTCAAGAAGATCAGGCCGATGCGATTGATGCGTTGATCCAGGCAGGGGC
CAACACCGAGGCCAGCCGGGGCCGTCGGTGGACGCCCCTGTTCTCTGCGA
TGGAGTACTGCAGTATCAGCGCCATTTACACCCTCCTGCGGCACGGCGCA
TCCTTGACAGTGCAAGACACGGATGGAGACACGCCGTTGCACCGGGCGTG
CTACTGGCAGCATAAAGGCCTGGAGGCGACCGTGGGCCTCTTGCTGCGGT
CGGGAGCGGACGAAACAGCCGTGAATAGCGCTGACGAGACTCCCGCAGAT
TTGCTCGGTTATCTCGACGATGACGATGGTAAAAGATATTCCGAAGCGGA
GATCGAGCGGGTGCGGCTGTTGCTGGCTCGGGCTCCGACCAACCGAGCGT
GGCTTGGCCGTTGCTGGCTCGTGATGCTGCGCTCTTGCGCAAAGACAGGT
AGAGCTTCCACCGACGAAACCGTCGGTGCTGATGAAGATTCAAACGATGC
TGGTGACAGGAAGAGCGGAAAGTTCAAGGGGGTGAGGAGGGAGAATGGGG
AGAGCGCTGGTAGTTGGGTACGCTCTCGGATGAACGGCGCCGGCGAAGTT
GGAGTCGAGGGTGGGGCGGGAGGCTGGGCGAGCATTGTGGCCTCCGTGGT
AGGGCTGGAGCCGGAGAAGGTGTTCCGCTCGATTGTGGGCTTCCTGTGAA
GATAGACGGTGGTCTCGGGAGATCTCAGGAGATATTTACAGGCACGAGCC
CCACTTGTTGGGTATAGTTGGGGTGGTGGTACTCGTACCGAGGGCTCTGT
GCACCGATACACTGGCTGTGGCCTGTGGACATTACGTACGTATGCCTGAC
TAGAACGCGTGGCCCGTGCGTCGTTCCGATACCCGTGCTTCGATCAACAC
CGACATGACACCAACATAATTTGCTGTGTTTTTGCAAGGCACGAATTTTG
TGTTGGTTTAGCCTTTCTGCCTGCTTCTCTCATGTCTACCATGTCGCACA
GACAAACCGGGAAAATCAAATTTCAAATTTGCGACCCTCAAACTCACTTC
TAGCTGCCCTCTACCACCACCGCAACAGCATTGTAGAGTTTCCTCTTGCA
GGTACATGTTGGTATGCAAGAGTCGTGTGCGGCAAGGCTAGGAAGAATTC
TACGGCCCCCAACAAATGACGTCCTGGTTGGCGTATCACAACAGAAATCC
TGGTAGGGTTAGACGTGTGATTTTAAAGAAGAGCTAACGGGAACCACATG
TAAATCCGACAGTGTCTCTTGTCGCTCTTTTTTGTTCTGTTCCAAAAGGG
AGCCGGCCCCTCAAGCGCAGATCGATCGCTATCCACGAATTCTGATTTCC
CGGCAGTGCTAGCGCTGGCGCTCCTACCTCCGGGACCGGCGAGCGGAACA
CATCATTTTTTCTTGGTCGTGGTGGCTACCCACAAGGCCTTGCATCAAAT
CTGGGCATGTTTTGTTTGCTGCCGCATTGTGGGATGGACAGACGAGGGTA
TCTGTGGACGGGTAGAACACGAAAGGGGAAGCTTTTTAGGAGCGTTTTGT
CTCAGTCAAATGAGTGTTGACTGTCTAGCGCCGAGGGGCGGTTCTTGGGT
TGGGTAAATGGTGCTTAGATGCTAAGGTTACGCAACCGTCTTGCGGAATG
TAGCAGTACATTTGCTGAAGGCAGGACAATCCCAGACG back to topCoding sequence (CDS) from alignment at Scaffold_441:290541..292378- >EsuBft100_20a-0001 ID=EsuBft100_20a-0001|Name=EsuBft100_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=849bp|location=Sequence derived from alignment at Scaffold_441:290541..292378- (Ectocarpus subulatus male Bft15b)
ATGTGGACACCATCCGCGATATTGACAGCTACTCCGCGCTCGACAAAGCC
ATTTGTTTTTGGCCACATTGACGTCGTTCGAGCACTTCTCAGACATGGGG
CGGACGTGAACGCTTGTGACGATGATTATTTTACTCCACTTCACCTTGCT
GCTCAAGAAGATCAGGCCGATGCGATTGATGCGTTGATCCAGGCAGGGGC
CAACACCGAGGCCAGCCGGGGCCGTCGGTGGACGCCCCTGTTCTCTGCGA
TGGAGTACTGCAGTATCAGCGCCATTTACACCCTCCTGCGGCACGGCGCA
TCCTTGACAGTGCAAGACACGGATGGAGACACGCCGTTGCACCGGGCGTG
CTACTGGCAGCATAAAGGCCTGGAGGCGACCGTGGGCCTCTTGCTGCGGT
CGGGAGCGGACGAAACAGCCGTGAATAGCGCTGACGAGACTCCCGCAGAT
TTGCTCGGTTATCTCGACGATGACGATGGTAAAAGATATTCCGAAGCGGA
GATCGAGCGGGTGCGGCTGTTGCTGGCTCGGGCTCCGACCAACCGAGCGT
GGCTTGGCCGTTGCTGGCTCGTGATGCTGCGCTCTTGCGCAAAGACAGGT
AGAGCTTCCACCGACGAAACCGTCGGTGCTGATGAAGATTCAAACGATGC
TGGTGACAGGAAGAGCGGAAAGTTCAAGGGGGTGAGGAGGGAGAATGGGG
AGAGCGCTGGTAGTTGGGTACGCTCTCGGATGAACGGCGCCGGCGAAGTT
GGAGTCGAGGGTGGGGCGGGAGGCTGGGCGAGCATTGTGGCCTCCGTGGT
AGGGCTGGAGCCGGAGAAGGTGTTCCGCTCGATTGTGGGCTTCCTGTGA back to top
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