EsuBft100_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft100_20a-0001
Unique NameEsuBft100_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:290541..292378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRS0
ProteomeIdEsuBft100_20
Protein domainsPTHR24188
Protein domainsIPR002110
Protein domainsIPR020683
Ownerapollo_admin@sb-roscoff.fr
Note26s proteasome non-atpase regulatory subunit 10 os:dictyostelium discoideum gn:psmd10 pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length1733
Hectar predicted targeting categoryother localisation
Evalue7.43e-79
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-08_002200.2
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K21440
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Descriptionspectrin binding
COG categoryI
BRITEko00000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0030139
GO0002090
GO0016328
GO0033365
GO2001257
GO0098900
GO0005200
GO0030016
GO0044092
GO0022403
GO0045747
GO0005923
GO0001885
GO0003824
GO0045664
GO0086019
GO0043001
GO0021519
GO0016881
GO0051865
GO0043270
GO0051347
GO0071599
GO0042383
GO0033157
GO0007507
GO0009925
GO0060218
GO0005515
GO0001756
GO0021521
GO0005838
GO0021520
GO0050808
GO0042221
GO0009880
GO0071709
GO0042981
GO0086002
GO0044449
GO0032414
GO0008092
GO0031324
GO0030318
GO0012505
GO0010882
GO0086070
GO0051439
GO0002474
GO0048793
GO0051279
GO0010605
GO0048471
GO0021654
GO0045202
GO1902532
GO0045685
GO0043266
GO0008284
GO0061195
GO0019899
GO0031398
GO0051726
GO0035315
GO0001570
GO0072661
GO0007409
GO0000281
GO0072660
GO0004842
GO0002027
GO0005856
GO0042803
GO0007368
GO0021986
GO0002028
GO0048546
GO0031076
GO0021508
GO0060113
GO0044304
GO0086066
GO0042325
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft100_20aEsuBft100_20aEctocarpus subulatus male Bft15bgeneScaffold_441 290541..292378 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_20a-0001-exonEsuBft100_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 290541..291022 -
EsuBft100_20a-0001-exonagat-exon-35368Ectocarpus subulatus male Bft15bexonScaffold_441 291128..292378 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_20a-0001-exonagat-three_prime_utr-97Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 290541..291022 -
EsuBft100_20a-0001-exonagat-three_prime_utr-98Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 291128..291529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_20a-0001-cdsEsuBft100_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 291530..292378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_20a-0001EsuBft100_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 291530..292378 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft100_20a-0001 ID=EsuBft100_20a-0001|Name=EsuBft100_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1733bp|location=Sequence derived from alignment at Scaffold_441:290541..292378- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGACACCATCCGCGATATTGACAGCTACTCCGCGCTCGACAAAGCC
ATTTGTTTTTGGCCACATTGACGTCGTTCGAGCACTTCTCAGACATGGGG
CGGACGTGAACGCTTGTGACGATGATTATTTTACTCCACTTCACCTTGCT
GCTCAAGAAGATCAGGCCGATGCGATTGATGCGTTGATCCAGGCAGGGGC
CAACACCGAGGCCAGCCGGGGCCGTCGGTGGACGCCCCTGTTCTCTGCGA
TGGAGTACTGCAGTATCAGCGCCATTTACACCCTCCTGCGGCACGGCGCA
TCCTTGACAGTGCAAGACACGGATGGAGACACGCCGTTGCACCGGGCGTG
CTACTGGCAGCATAAAGGCCTGGAGGCGACCGTGGGCCTCTTGCTGCGGT
CGGGAGCGGACGAAACAGCCGTGAATAGCGCTGACGAGACTCCCGCAGAT
TTGCTCGGTTATCTCGACGATGACGATGGTAAAAGATATTCCGAAGCGGA
GATCGAGCGGGTGCGGCTGTTGCTGGCTCGGGCTCCGACCAACCGAGCGT
GGCTTGGCCGTTGCTGGCTCGTGATGCTGCGCTCTTGCGCAAAGACAGGT
AGAGCTTCCACCGACGAAACCGTCGGTGCTGATGAAGATTCAAACGATGC
TGGTGACAGGAAGAGCGGAAAGTTCAAGGGGGTGAGGAGGGAGAATGGGG
AGAGCGCTGGTAGTTGGGTACGCTCTCGGATGAACGGCGCCGGCGAAGTT
GGAGTCGAGGGTGGGGCGGGAGGCTGGGCGAGCATTGTGGCCTCCGTGGT
AGGGCTGGAGCCGGAGAAGGTGTTCCGCTCGATTGTGGGCTTCCTGTGAA
GATAGACGGTGGTCTCGGGAGATCTCAGGAGATATTTACAGGCACGAGCC
CCACTTGTTGGGTATAGTTGGGGTGGTGGTACTCGTACCGAGGGCTCTGT
GCACCGATACACTGGCTGTGGCCTGTGGACATTACGTACGTATGCCTGAC
TAGAACGCGTGGCCCGTGCGTCGTTCCGATACCCGTGCTTCGATCAACAC
CGACATGACACCAACATAATTTGCTGTGTTTTTGCAAGGCACGAATTTTG
TGTTGGTTTAGCCTTTCTGCCTGCTTCTCTCATGTCTACCATGTCGCACA
GACAAACCGGGAAAATCAAATTTCAAATTTGCGACCCTCAAACTCACTTC
TAGCTGCCCTCTACCACCACCGCAACAGCATTGTAGAGTTTCCTCTTGCA
GGGTTAGACGTGTGATTTTAAAGAAGAGCTAACGGGAACCACATGTAAAT
CCGACAGTGTCTCTTGTCGCTCTTTTTTGTTCTGTTCCAAAAGGGAGCCG
GCCCCTCAAGCGCAGATCGATCGCTATCCACGAATTCTGATTTCCCGGCA
GTGCTAGCGCTGGCGCTCCTACCTCCGGGACCGGCGAGCGGAACACATCA
TTTTTTCTTGGTCGTGGTGGCTACCCACAAGGCCTTGCATCAAATCTGGG
CATGTTTTGTTTGCTGCCGCATTGTGGGATGGACAGACGAGGGTATCTGT
GGACGGGTAGAACACGAAAGGGGAAGCTTTTTAGGAGCGTTTTGTCTCAG
TCAAATGAGTGTTGACTGTCTAGCGCCGAGGGGCGGTTCTTGGGTTGGGT
AAATGGTGCTTAGATGCTAAGGTTACGCAACCGTCTTGCGGAATGTAGCA
GTACATTTGCTGAAGGCAGGACAATCCCAGACG
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protein sequence of EsuBft100_20a-0001

>EsuBft100_20 ID=EsuBft100_20|Name=EsuBft100_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=282bp
MWTPSAILTATPRSTKPFVFGHIDVVRALLRHGADVNACDDDYFTPLHLA
AQEDQADAIDALIQAGANTEASRGRRWTPLFSAMEYCSISAIYTLLRHGA
SLTVQDTDGDTPLHRACYWQHKGLEATVGLLLRSGADETAVNSADETPAD
LLGYLDDDDGKRYSEAEIERVRLLLARAPTNRAWLGRCWLVMLRSCAKTG
RASTDETVGADEDSNDAGDRKSGKFKGVRRENGESAGSWVRSRMNGAGEV
GVEGGAGGWASIVASVVGLEPEKVFRSIVGFL
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mRNA from alignment at Scaffold_441:290541..292378-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft100_20a-0001 ID=EsuBft100_20a-0001|Name=EsuBft100_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1838bp|location=Sequence derived from alignment at Scaffold_441:290541..292378- (Ectocarpus subulatus male Bft15b)
ATGTGGACACCATCCGCGATATTGACAGCTACTCCGCGCTCGACAAAGCC
ATTTGTTTTTGGCCACATTGACGTCGTTCGAGCACTTCTCAGACATGGGG
CGGACGTGAACGCTTGTGACGATGATTATTTTACTCCACTTCACCTTGCT
GCTCAAGAAGATCAGGCCGATGCGATTGATGCGTTGATCCAGGCAGGGGC
CAACACCGAGGCCAGCCGGGGCCGTCGGTGGACGCCCCTGTTCTCTGCGA
TGGAGTACTGCAGTATCAGCGCCATTTACACCCTCCTGCGGCACGGCGCA
TCCTTGACAGTGCAAGACACGGATGGAGACACGCCGTTGCACCGGGCGTG
CTACTGGCAGCATAAAGGCCTGGAGGCGACCGTGGGCCTCTTGCTGCGGT
CGGGAGCGGACGAAACAGCCGTGAATAGCGCTGACGAGACTCCCGCAGAT
TTGCTCGGTTATCTCGACGATGACGATGGTAAAAGATATTCCGAAGCGGA
GATCGAGCGGGTGCGGCTGTTGCTGGCTCGGGCTCCGACCAACCGAGCGT
GGCTTGGCCGTTGCTGGCTCGTGATGCTGCGCTCTTGCGCAAAGACAGGT
AGAGCTTCCACCGACGAAACCGTCGGTGCTGATGAAGATTCAAACGATGC
TGGTGACAGGAAGAGCGGAAAGTTCAAGGGGGTGAGGAGGGAGAATGGGG
AGAGCGCTGGTAGTTGGGTACGCTCTCGGATGAACGGCGCCGGCGAAGTT
GGAGTCGAGGGTGGGGCGGGAGGCTGGGCGAGCATTGTGGCCTCCGTGGT
AGGGCTGGAGCCGGAGAAGGTGTTCCGCTCGATTGTGGGCTTCCTGTGAA
GATAGACGGTGGTCTCGGGAGATCTCAGGAGATATTTACAGGCACGAGCC
CCACTTGTTGGGTATAGTTGGGGTGGTGGTACTCGTACCGAGGGCTCTGT
GCACCGATACACTGGCTGTGGCCTGTGGACATTACGTACGTATGCCTGAC
TAGAACGCGTGGCCCGTGCGTCGTTCCGATACCCGTGCTTCGATCAACAC
CGACATGACACCAACATAATTTGCTGTGTTTTTGCAAGGCACGAATTTTG
TGTTGGTTTAGCCTTTCTGCCTGCTTCTCTCATGTCTACCATGTCGCACA
GACAAACCGGGAAAATCAAATTTCAAATTTGCGACCCTCAAACTCACTTC
TAGCTGCCCTCTACCACCACCGCAACAGCATTGTAGAGTTTCCTCTTGCA
GGTACATGTTGGTATGCAAGAGTCGTGTGCGGCAAGGCTAGGAAGAATTC
TACGGCCCCCAACAAATGACGTCCTGGTTGGCGTATCACAACAGAAATCC
TGGTAGGGTTAGACGTGTGATTTTAAAGAAGAGCTAACGGGAACCACATG
TAAATCCGACAGTGTCTCTTGTCGCTCTTTTTTGTTCTGTTCCAAAAGGG
AGCCGGCCCCTCAAGCGCAGATCGATCGCTATCCACGAATTCTGATTTCC
CGGCAGTGCTAGCGCTGGCGCTCCTACCTCCGGGACCGGCGAGCGGAACA
CATCATTTTTTCTTGGTCGTGGTGGCTACCCACAAGGCCTTGCATCAAAT
CTGGGCATGTTTTGTTTGCTGCCGCATTGTGGGATGGACAGACGAGGGTA
TCTGTGGACGGGTAGAACACGAAAGGGGAAGCTTTTTAGGAGCGTTTTGT
CTCAGTCAAATGAGTGTTGACTGTCTAGCGCCGAGGGGCGGTTCTTGGGT
TGGGTAAATGGTGCTTAGATGCTAAGGTTACGCAACCGTCTTGCGGAATG
TAGCAGTACATTTGCTGAAGGCAGGACAATCCCAGACG
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Coding sequence (CDS) from alignment at Scaffold_441:290541..292378-

>EsuBft100_20a-0001 ID=EsuBft100_20a-0001|Name=EsuBft100_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=849bp|location=Sequence derived from alignment at Scaffold_441:290541..292378- (Ectocarpus subulatus male Bft15b)
ATGTGGACACCATCCGCGATATTGACAGCTACTCCGCGCTCGACAAAGCC
ATTTGTTTTTGGCCACATTGACGTCGTTCGAGCACTTCTCAGACATGGGG
CGGACGTGAACGCTTGTGACGATGATTATTTTACTCCACTTCACCTTGCT
GCTCAAGAAGATCAGGCCGATGCGATTGATGCGTTGATCCAGGCAGGGGC
CAACACCGAGGCCAGCCGGGGCCGTCGGTGGACGCCCCTGTTCTCTGCGA
TGGAGTACTGCAGTATCAGCGCCATTTACACCCTCCTGCGGCACGGCGCA
TCCTTGACAGTGCAAGACACGGATGGAGACACGCCGTTGCACCGGGCGTG
CTACTGGCAGCATAAAGGCCTGGAGGCGACCGTGGGCCTCTTGCTGCGGT
CGGGAGCGGACGAAACAGCCGTGAATAGCGCTGACGAGACTCCCGCAGAT
TTGCTCGGTTATCTCGACGATGACGATGGTAAAAGATATTCCGAAGCGGA
GATCGAGCGGGTGCGGCTGTTGCTGGCTCGGGCTCCGACCAACCGAGCGT
GGCTTGGCCGTTGCTGGCTCGTGATGCTGCGCTCTTGCGCAAAGACAGGT
AGAGCTTCCACCGACGAAACCGTCGGTGCTGATGAAGATTCAAACGATGC
TGGTGACAGGAAGAGCGGAAAGTTCAAGGGGGTGAGGAGGGAGAATGGGG
AGAGCGCTGGTAGTTGGGTACGCTCTCGGATGAACGGCGCCGGCGAAGTT
GGAGTCGAGGGTGGGGCGGGAGGCTGGGCGAGCATTGTGGCCTCCGTGGT
AGGGCTGGAGCCGGAGAAGGTGTTCCGCTCGATTGTGGGCTTCCTGTGA
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