EsuBft100_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	2880.D8LRS6
ProteomeId	EsuBft100_16
Protein domains	IPR000537
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	PTHR11048
Protein domains	IPR006369
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	protoheme ix mitochondrial os:arabidopsis thaliana gn:cox10 pe:2 sv:4 [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	2145
Hectar predicted targeting category	mitochondrion
Evalue	1.16e-285
EggNOG OGs	COG0109@1\|root,KOG1380@2759\|Eukaryota
Ec32 ortholog description	COX10 homolog, cytochrome c oxidase assembly protein
Ec32 ortholog	Ec-08_002270.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	COX10
KEGG rclass	RC01786
KEGG ko	ko:K02257,ko:K09008,ko:K22072
KEGG Reaction	R07411
KEGG Pathway	ko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714
KEGG Module	M00154
GOs	GO:0000266,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004311,GO:0004518,GO:0004519,GO:0004659,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006753,GO:0006778,GO:0006779,GO:0006783,GO:0006784,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008495,GO:0008535,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016310,GO:0016740,GO:0016765,GO:0016787,GO:0016788,GO:0017004,GO:0017144,GO:0018130,GO:0018342,GO:0018343,GO:0019438,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033013,GO:0033014,GO:0034622,GO:0034641,GO:0036211,GO:0042168,GO:0042440,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046148,GO:0046160,GO:0046483,GO:0048285,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070069,GO:0071704,GO:0071840,GO:0072521,GO:0090304,GO:0090305,GO:0097159,GO:0097354,GO:1901135,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EC	2.5.1.141
Description	heme o metabolic process
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006,ko03029

Cross References

External references for this mRNA


Database	Accession
GO	0044281
GO	0009060
EC	2.5.1.29
GO	0048034
GO	0031966
GO	0000266
GO	0004129
GO	0008535
GO	0006784
GO	1902600
GO	0008495
EC	1.9.3.1
GO	0016021
GO	0044238

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:255449..258232+
coding sequence from alignment at Scaffold_441:255449..258232+

spliced messenger RNA

>EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2145bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAGCCAATGCGCTGCACGCAACAAAGCATACCACACGCGTTGTCGCCCG
TACTTCATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGC
ACATGCCCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCAT
GTGCGTTTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTG
GTAGCAGAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCA
CCGTTTGAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGG
CTGGAGGACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACG
ATGCTCGCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGC
GAATGATGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGA
GGATTTCGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCT
GGTATCTCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGG
TGCAGCCAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGA
GGTCGGAGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCT
TTGATGGGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCT
GTTGTTGGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTC
TTGCCTGGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTC
CCATGCGCCGATCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTA
CTCCTGGTACCTCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTA
CGAGCTGGATGTTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTC
TACCACGCTTACCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGG
AGTGTTCAAGGCGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCG
TGTTTCACTCGCGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAG
CTATCCACACTCATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCT
GCACGAAATCGTGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAG
TCGTAGAAGCAGCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCT
CACAAGGAGGAGAGTCTGCTGGCACGGAGTGATACAGGTAGTTAGGTAGG
AAGCCCAGGCATATCAAGGATAGAACGCTTTCGCGATTGTGATGTTGCTT
TCCCCCAATAGCGAGCAGTTAGGACCCCGAAATCACTACACGCTTCCGGG
GTAGCTGCTGTAGCACGACGTGTTGGAACCACGTGTGTTCAACATCTACT
CAGCGCACCGGCATAAAAACGCGTAGCTTCATAGCCAACAACGGATGCCG
CGCACGCTGTGCGTAAAATACTCCCATCTACACCGTACGCCGCACAGCAG
TGAACGGCCGCGCGCAATTAGCCGTGATTTTGGTTGATGAGCCCGTCCAC
CTCATTTCCTATAAAGAACGCCAGCGCAGCGCACGATCCTCCTAGGACGA
GCATTTCTGTGCCGGAGATGCACCAGTGACGGGTGCCGAATTGACTCTTG
ACATGCGTCGGAACAGCGGGGGTCGCAGGATGTTTGGTCATGGTTAGTGA
AGCGTTTGTGCGTACTCAAAATTCGATGGCATGGTCGTCGTGAGTGAAAG
GGACGGCTGAACACTTAGGAGCAAGTGAAGGCAAGCACCGCAGAATGAAG
GCGGAGAAAATAGAAAACTTTTGAGAGATGTTCCTCCTGTGACTTCCGGT
ATTGAGTTGGTTTCATGCACGCGCTGCGTGATGCCCGGCTGCAACGCGAT
TTGTGTCTCCCACCGATTGCCGCACAAGATCGAATGGTCACCGTGTATGC
GAATACGACCAAACACGCAACACGACTCTCTTCTGTTGAGTTTCCTCTTA
GACCTGATCGGGATCGGGCGATCCCTAGCAAAACACATGTGTTGCTGTCC
CGTGTAGACTTGCGTCTTCGATCCGTCAGCCGGGTTAGGGAAATC

protein sequence of EsuBft100_16a-0001

>EsuBft100_16 ID=EsuBft100_16|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=412bp
MLLRGVHGRLCKPLAHARALGVVRLGPNLEACAFGTDTRQQEPKRRTVVA
EAGHLMKLYSQLSKHRLSALVMSTTSAGYLAAGGPVDALALTSACVGTML
ASSSANTFNQVIETANDARMHRTRARPLPSGRISRQHALGWGVASGTAGI
SVLAAGSNPLTATLGAANLLLYVGPYTLSKTRSEINTWVGSVVGAVPPLM
GWAAATGELVAVEPLLLATYLFMWQFPHFFSLAWLHREDYARGGFAMVPC
ADPTGSRTASLVTRYSWYLVPIPLAAAALDATSWMFAVEGTAFNAYLLYH
AYRFDKDKSNANARGVFKASLWHLPAVLALFVFHSRRWELEDKAEDEQLS
TLIPRIRARLTKLCLHEIVQKDEAASFCPVVVVEAAGTEAQNIATAAAHK
EESLLARSDTGS

mRNA from alignment at Scaffold_441:255449..258232+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2784bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)
GCAGCCAATGCGCTGCACGCAACAAAGCATACCACACGCGTTGTCGCCCG
TACTTCATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGC
ACATGCCCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCAT
GTGCGTTTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTG
GTAGCAGAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCA
CCGTTTGAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGG
CTGGAGGACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACG
ATGCTCGCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGC
GAATGATGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGA
GGATTTCGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCT
GGTATCTCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGG
TGCAGCCAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGA
GGTCGGAGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCT
TTGATGGGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCT
GTTGTTGGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTC
TTGCCTGGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTG
AGAGGTGCATGCACACACTGTTTTGACCGATGGGCAAATGCCGTCGATGC
TGCTGTATCAGTGCGCCTCCCGTGTGTCCGTGTGTTTCTCTGTAAATAGA
AGCGGCGGGCTGTGAGCATAACGTTGGCTTCGTACGGCATTTTTGGAGTG
CTTGTTGTTTATGTCTAAAAAGCATTCCTTCCTTTTCGTAGAGGCCCTTT
CTTGGTGCCGCCCGCCCCCCTACTGACGTCACGTCGCGGTAGACAGGAAA
CATGCGGTTGAAATACCAACGCACTTGCCGTCGATATTCGTACTAATAGT
GCCACGCTTTTTCGGATCATATCGTTTACATCATTTTCACTTGTGAGGTT
GCGGAGGTCTTTTGCAAATGCGGTGTTCATGTGTGTCATCGTGAACGTGT
TTGTCAGCAATATGGTGCCACCCGCCCGGCGTCACTTGAAAGAACAGGTC
CTAGTTAGTCGGCCAATGTTTATCGTCATGTGTATACACTGCTGTCGTGC
AGCAACAGAGGCGACGAAGATTACATACGTGTACAAGCACCACTGTCGTG
TGTGGTTTGTGTGCTCAACTCGCACGGGTCGTTCTCACCATTCCTACGGG
GAAACCTGCTTTACGCTCGATTTGCGCTCTCGCCAGGTCCCATGCGCCGA
TCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTACTCCTGGTACC
TCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTACGAGCTGGATG
TTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTCTACCACGCTTA
CCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGGAGTGTTCAAGG
CGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCGTGTTTCACTCG
CGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAGCTATCCACACT
CATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCTGCACGAAATCG
TGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAGTCGTAGAAGCA
GCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCTCACAAGGAGGA
GAGTCTGCTGGCACGGAGTGATACAGGTAGTTAGGTAGGAAGCCCAGGCA
TATCAAGGATAGAACGCTTTCGCGATTGTGATGTTGCTTTCCCCCAATAG
CGAGCAGTTAGGACCCCGAAATCACTACACGCTTCCGGGGTAGCTGCTGT
AGCACGACGTGTTGGAACCACGTGTGTTCAACATCTACTCAGCGCACCGG
CATAAAAACGCGTAGCTTCATAGCCAACAACGGATGCCGCGCACGCTGTG
CGTAAAATACTCCCATCTACACCGTACGCCGCACAGCAGTGAACGGCCGC
GCGCAATTAGCCGTGATTTTGGTTGATGAGCCCGTCCACCTCATTTCCTA
TAAAGAACGCCAGCGCAGCGCACGATCCTCCTAGGACGAGCATTTCTGTG
CCGGAGATGCACCAGTGACGGGTGCCGAATTGACTCTTGACATGCGTCGG
AACAGCGGGGGTCGCAGGATGTTTGGTCATGGTTAGTGAAGCGTTTGTGC
GTACTCAAAATTCGATGGCATGGTCGTCGTGAGTGAAAGGGACGGCTGAA
CACTTAGGAGCAAGTGAAGGCAAGCACCGCAGAATGAAGGCGGAGAAAAT
AGAAAACTTTTGAGAGATGTTCCTCCTGTGACTTCCGGTATTGAGTTGGT
TTCATGCACGCGCTGCGTGATGCCCGGCTGCAACGCGATTTGTGTCTCCC
ACCGATTGCCGCACAAGATCGAATGGTCACCGTGTATGCGAATACGACCA
AACACGCAACACGACTCTCTTCTGTTGAGTTTCCTCTTAGACCTGATCGG
GATCGGGCGATCCCTAGCAAAACACATGTGTTGCTGTCCCGTGTAGACTT
GCGTCTTCGATCCGTCAGCCGGGTTAGGGAAATC

Coding sequence (CDS) from alignment at Scaffold_441:255449..258232+

>EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1239bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGCACATGC
CCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCATGTGCGT
TTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTGGTAGCA
GAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCACCGTTT
GAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGGCTGGAG
GACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACGATGCTC
GCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGCGAATGA
TGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGAGGATTT
CGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCTGGTATC
TCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGGTGCAGC
CAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGAGGTCGG
AGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCTTTGATG
GGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCTGTTGTT
GGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTCTTGCCT
GGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTCCCATGC
GCCGATCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTACTCCTG
GTACCTCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTACGAGCT
GGATGTTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTCTACCAC
GCTTACCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGGAGTGTT
CAAGGCGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCGTGTTTC
ACTCGCGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAGCTATCC
ACACTCATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCTGCACGA
AATCGTGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAGTCGTAG
AAGCAGCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCTCACAAG
GAGGAGAGTCTGCTGGCACGGAGTGATACAGGTAGTTAG