EsuBft100_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft100_16a-0001
Unique NameEsuBft100_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:255449..258232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRS6
ProteomeIdEsuBft100_16
Protein domainsIPR000537
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsPTHR11048
Protein domainsIPR006369
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteprotoheme ix mitochondrial os:arabidopsis thaliana gn:cox10 pe:2 sv:4 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length2145
Hectar predicted targeting categorymitochondrion
Evalue1.16e-285
EggNOG OGsCOG0109@1|root,KOG1380@2759|Eukaryota
Ec32 ortholog descriptionCOX10 homolog, cytochrome c oxidase assembly protein
Ec32 orthologEc-08_002270.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCOX10
KEGG rclassRC01786
KEGG koko:K02257,ko:K09008,ko:K22072
KEGG ReactionR07411
KEGG Pathwayko00190,ko00860,ko01100,ko01110,ko04714,map00190,map00860,map01100,map01110,map04714
KEGG ModuleM00154
GOsGO:0000266,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004311,GO:0004518,GO:0004519,GO:0004659,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006753,GO:0006778,GO:0006779,GO:0006783,GO:0006784,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008495,GO:0008535,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016310,GO:0016740,GO:0016765,GO:0016787,GO:0016788,GO:0017004,GO:0017144,GO:0018130,GO:0018342,GO:0018343,GO:0019438,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033013,GO:0033014,GO:0034622,GO:0034641,GO:0036211,GO:0042168,GO:0042440,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046148,GO:0046160,GO:0046483,GO:0048285,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070069,GO:0071704,GO:0071840,GO:0072521,GO:0090304,GO:0090305,GO:0097159,GO:0097354,GO:1901135,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EC2.5.1.141
Descriptionheme o metabolic process
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03029
Cross References
External references for this mRNA
DatabaseAccession
GO0044281
GO0009060
EC2.5.1.29
GO0048034
GO0031966
GO0000266
GO0004129
GO0008535
GO0006784
GO1902600
GO0008495
EC1.9.3.1
GO0016021
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft100_16aEsuBft100_16aEctocarpus subulatus male Bft15bgeneScaffold_441 255449..258232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_16a-0001-exonEsuBft100_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 255449..256245 +
EsuBft100_16a-0001-exonagat-exon-35336Ectocarpus subulatus male Bft15bexonScaffold_441 256885..258232 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_16a-0001-exonagat-five_prime_utr-57Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_441 255449..255504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_16a-0001-cdsEsuBft100_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 255505..256245 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_16a-0001-exonagat-three_prime_utr-93Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 257383..258232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_16a-0001EsuBft100_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 255505..257382 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2145bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAGCCAATGCGCTGCACGCAACAAAGCATACCACACGCGTTGTCGCCCG
TACTTCATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGC
ACATGCCCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCAT
GTGCGTTTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTG
GTAGCAGAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCA
CCGTTTGAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGG
CTGGAGGACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACG
ATGCTCGCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGC
GAATGATGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGA
GGATTTCGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCT
GGTATCTCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGG
TGCAGCCAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGA
GGTCGGAGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCT
TTGATGGGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCT
GTTGTTGGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTC
TTGCCTGGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTC
CCATGCGCCGATCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTA
CTCCTGGTACCTCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTA
CGAGCTGGATGTTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTC
TACCACGCTTACCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGG
AGTGTTCAAGGCGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCG
TGTTTCACTCGCGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAG
CTATCCACACTCATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCT
GCACGAAATCGTGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAG
TCGTAGAAGCAGCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCT
CACAAGGAGGAGAGTCTGCTGGCACGGAGTGATACAGGTAGTTAGGTAGG
AAGCCCAGGCATATCAAGGATAGAACGCTTTCGCGATTGTGATGTTGCTT
TCCCCCAATAGCGAGCAGTTAGGACCCCGAAATCACTACACGCTTCCGGG
GTAGCTGCTGTAGCACGACGTGTTGGAACCACGTGTGTTCAACATCTACT
CAGCGCACCGGCATAAAAACGCGTAGCTTCATAGCCAACAACGGATGCCG
CGCACGCTGTGCGTAAAATACTCCCATCTACACCGTACGCCGCACAGCAG
TGAACGGCCGCGCGCAATTAGCCGTGATTTTGGTTGATGAGCCCGTCCAC
CTCATTTCCTATAAAGAACGCCAGCGCAGCGCACGATCCTCCTAGGACGA
GCATTTCTGTGCCGGAGATGCACCAGTGACGGGTGCCGAATTGACTCTTG
ACATGCGTCGGAACAGCGGGGGTCGCAGGATGTTTGGTCATGGTTAGTGA
AGCGTTTGTGCGTACTCAAAATTCGATGGCATGGTCGTCGTGAGTGAAAG
GGACGGCTGAACACTTAGGAGCAAGTGAAGGCAAGCACCGCAGAATGAAG
GCGGAGAAAATAGAAAACTTTTGAGAGATGTTCCTCCTGTGACTTCCGGT
ATTGAGTTGGTTTCATGCACGCGCTGCGTGATGCCCGGCTGCAACGCGAT
TTGTGTCTCCCACCGATTGCCGCACAAGATCGAATGGTCACCGTGTATGC
GAATACGACCAAACACGCAACACGACTCTCTTCTGTTGAGTTTCCTCTTA
GACCTGATCGGGATCGGGCGATCCCTAGCAAAACACATGTGTTGCTGTCC
CGTGTAGACTTGCGTCTTCGATCCGTCAGCCGGGTTAGGGAAATC
back to top

protein sequence of EsuBft100_16a-0001

>EsuBft100_16 ID=EsuBft100_16|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=412bp
MLLRGVHGRLCKPLAHARALGVVRLGPNLEACAFGTDTRQQEPKRRTVVA
EAGHLMKLYSQLSKHRLSALVMSTTSAGYLAAGGPVDALALTSACVGTML
ASSSANTFNQVIETANDARMHRTRARPLPSGRISRQHALGWGVASGTAGI
SVLAAGSNPLTATLGAANLLLYVGPYTLSKTRSEINTWVGSVVGAVPPLM
GWAAATGELVAVEPLLLATYLFMWQFPHFFSLAWLHREDYARGGFAMVPC
ADPTGSRTASLVTRYSWYLVPIPLAAAALDATSWMFAVEGTAFNAYLLYH
AYRFDKDKSNANARGVFKASLWHLPAVLALFVFHSRRWELEDKAEDEQLS
TLIPRIRARLTKLCLHEIVQKDEAASFCPVVVVEAAGTEAQNIATAAAHK
EESLLARSDTGS
back to top

mRNA from alignment at Scaffold_441:255449..258232+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2784bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)
GCAGCCAATGCGCTGCACGCAACAAAGCATACCACACGCGTTGTCGCCCG
TACTTCATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGC
ACATGCCCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCAT
GTGCGTTTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTG
GTAGCAGAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCA
CCGTTTGAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGG
CTGGAGGACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACG
ATGCTCGCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGC
GAATGATGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGA
GGATTTCGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCT
GGTATCTCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGG
TGCAGCCAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGA
GGTCGGAGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCT
TTGATGGGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCT
GTTGTTGGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTC
TTGCCTGGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTG
AGAGGTGCATGCACACACTGTTTTGACCGATGGGCAAATGCCGTCGATGC
TGCTGTATCAGTGCGCCTCCCGTGTGTCCGTGTGTTTCTCTGTAAATAGA
AGCGGCGGGCTGTGAGCATAACGTTGGCTTCGTACGGCATTTTTGGAGTG
CTTGTTGTTTATGTCTAAAAAGCATTCCTTCCTTTTCGTAGAGGCCCTTT
CTTGGTGCCGCCCGCCCCCCTACTGACGTCACGTCGCGGTAGACAGGAAA
CATGCGGTTGAAATACCAACGCACTTGCCGTCGATATTCGTACTAATAGT
GCCACGCTTTTTCGGATCATATCGTTTACATCATTTTCACTTGTGAGGTT
GCGGAGGTCTTTTGCAAATGCGGTGTTCATGTGTGTCATCGTGAACGTGT
TTGTCAGCAATATGGTGCCACCCGCCCGGCGTCACTTGAAAGAACAGGTC
CTAGTTAGTCGGCCAATGTTTATCGTCATGTGTATACACTGCTGTCGTGC
AGCAACAGAGGCGACGAAGATTACATACGTGTACAAGCACCACTGTCGTG
TGTGGTTTGTGTGCTCAACTCGCACGGGTCGTTCTCACCATTCCTACGGG
GAAACCTGCTTTACGCTCGATTTGCGCTCTCGCCAGGTCCCATGCGCCGA
TCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTACTCCTGGTACC
TCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTACGAGCTGGATG
TTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTCTACCACGCTTA
CCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGGAGTGTTCAAGG
CGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCGTGTTTCACTCG
CGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAGCTATCCACACT
CATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCTGCACGAAATCG
TGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAGTCGTAGAAGCA
GCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCTCACAAGGAGGA
GAGTCTGCTGGCACGGAGTGATACAGGTAGTTAGGTAGGAAGCCCAGGCA
TATCAAGGATAGAACGCTTTCGCGATTGTGATGTTGCTTTCCCCCAATAG
CGAGCAGTTAGGACCCCGAAATCACTACACGCTTCCGGGGTAGCTGCTGT
AGCACGACGTGTTGGAACCACGTGTGTTCAACATCTACTCAGCGCACCGG
CATAAAAACGCGTAGCTTCATAGCCAACAACGGATGCCGCGCACGCTGTG
CGTAAAATACTCCCATCTACACCGTACGCCGCACAGCAGTGAACGGCCGC
GCGCAATTAGCCGTGATTTTGGTTGATGAGCCCGTCCACCTCATTTCCTA
TAAAGAACGCCAGCGCAGCGCACGATCCTCCTAGGACGAGCATTTCTGTG
CCGGAGATGCACCAGTGACGGGTGCCGAATTGACTCTTGACATGCGTCGG
AACAGCGGGGGTCGCAGGATGTTTGGTCATGGTTAGTGAAGCGTTTGTGC
GTACTCAAAATTCGATGGCATGGTCGTCGTGAGTGAAAGGGACGGCTGAA
CACTTAGGAGCAAGTGAAGGCAAGCACCGCAGAATGAAGGCGGAGAAAAT
AGAAAACTTTTGAGAGATGTTCCTCCTGTGACTTCCGGTATTGAGTTGGT
TTCATGCACGCGCTGCGTGATGCCCGGCTGCAACGCGATTTGTGTCTCCC
ACCGATTGCCGCACAAGATCGAATGGTCACCGTGTATGCGAATACGACCA
AACACGCAACACGACTCTCTTCTGTTGAGTTTCCTCTTAGACCTGATCGG
GATCGGGCGATCCCTAGCAAAACACATGTGTTGCTGTCCCGTGTAGACTT
GCGTCTTCGATCCGTCAGCCGGGTTAGGGAAATC
back to top

Coding sequence (CDS) from alignment at Scaffold_441:255449..258232+

>EsuBft100_16a-0001 ID=EsuBft100_16a-0001|Name=EsuBft100_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1239bp|location=Sequence derived from alignment at Scaffold_441:255449..258232+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGCGTGGTGTTCACGGACGGTTGTGCAAACCTCTAGCACATGC
CCGAGCTTTGGGGGTGGTTCGGCTAGGCCCGAACTTGGAAGCATGTGCGT
TTGGCACGGACACAAGGCAGCAAGAACCCAAGAGGCGTACGGTGGTAGCA
GAGGCCGGGCATCTCATGAAGTTGTACTCCCAGTTGTCCAAGCACCGTTT
GAGCGCGTTGGTTATGTCGACAACGTCTGCCGGTTACCTGGCGGCTGGAG
GACCGGTCGATGCCCTTGCGCTCACGAGTGCTTGTGTCGGCACGATGCTC
GCGTCGAGCTCGGCTAACACGTTTAACCAAGTTATCGAGACTGCGAATGA
TGCCCGAATGCATCGGACACGGGCCCGTCCGCTCCCTTCCGGGAGGATTT
CGCGCCAGCACGCGCTAGGGTGGGGAGTAGCGTCAGGTACTGCTGGTATC
TCTGTTCTCGCGGCGGGCTCCAACCCACTTACGGCTACCCTTGGTGCAGC
CAACCTGCTCTTGTATGTCGGGCCGTACACGCTGTCGAAGACGAGGTCGG
AGATCAACACATGGGTAGGCTCGGTTGTTGGCGCCGTGCCACCTTTGATG
GGGTGGGCAGCCGCCACAGGCGAATTGGTCGCCGTGGAGCCGCTGTTGTT
GGCCACATACCTTTTCATGTGGCAATTTCCGCACTTCTTTTCTCTTGCCT
GGCTTCACCGTGAGGACTACGCCAGAGGGGGCTTCGCGATGGTCCCATGC
GCCGATCCAACAGGGAGTAGAACAGCGAGCCTCGTTACACGGTACTCCTG
GTACCTCGTGCCCATTCCGTTAGCAGCAGCCGCTCTGGATGCTACGAGCT
GGATGTTCGCGGTAGAGGGCACAGCTTTCAATGCGTACCTCCTCTACCAC
GCTTACCGATTTGATAAGGACAAATCCAATGCAAACGCCAGAGGAGTGTT
CAAGGCGTCGCTGTGGCATCTACCAGCTGTCCTGGCATTGTTCGTGTTTC
ACTCGCGTCGGTGGGAGCTGGAGGACAAAGCGGAGGACGAGCAGCTATCC
ACACTCATCCCAAGAATAAGGGCGCGCCTCACGAAACTATGCCTGCACGA
AATCGTGCAAAAGGATGAGGCAGCGTCATTTTGCCCAGTGGTAGTCGTAG
AAGCAGCCGGGACGGAGGCTCAGAACATCGCGACGGCGGCAGCTCACAAG
GAGGAGAGTCTGCTGGCACGGAGTGATACAGGTAGTTAG
back to top