EsuBft100_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	44056.XP_009038082.1
ProteomeId	EsuBft100_15
Protein domains	IPR013219
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	100
Hectar predicted targeting category	other localisation
Evalue	3.89e-05
EggNOG OGs	2D0C1@1\|root,2SDM7@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K17411
Description	Mitochondrial ribosomal subunit S27
COG category	S
BRITE	br01610,ko00000,ko03011

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:252782..255330-
coding sequence from alignment at Scaffold_441:252782..255330-

spliced messenger RNA

>EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1000bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCAGCAGCCAGCGCCGTGCTCGAGAGATTGCAGAGTGCCAAAGAGCACA
CCTACCACTGCAACGCTGACAGAGGAGGGGCTAGCCATGAACAAGAATGT
GGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCCCCACAGCAATGTCC
GTACTGGCAACAAGGTTTTGCGCAAGAACATCATTGGCCAGAAGATAGCA
GAGTACTACCCGCAGACTACAGTCCCGGACATGGTCAAAATGGCGGAGAA
GGAGATTCCTGGCGTTATCATGGACCACAAGCGAGAATGGCGACGACAAA
AACGTGAACTAGACGAGGGATCAAAACGAGGATCTTCGAAAAAAGGCGAG
GGAAAGCGATCAACATGATGCAGGCTCCGACCGTGCTTGGATGTTGTTTC
TACCGTGGCGCATGGTCTTTGCTGTCGCAATTTGGTAGTGCGACTCTCCA
CCAGTAAGAAGAATGTAGATTTTCAAGCTGCAGGGTACAGGATACCTCCG
CACTGATGGTTTTGATTGGAGGTGGTGTTGATTGGGTTTGCGTTGGATGC
ATTTTTCGTCAGCAAGAGTTGGACCCTTCACTGTGCATCAGCAGTAGAAA
TTGACCGCTCTTCTTCGAGCTGGACTCATGAAGCATCCATGGGACCGACC
GATTGAATTAAGCTTCCTTGGCGTGAGGCATGATGTTGCTGCCTGGGGCG
TAGCTTTTGTGCTGCGCAGCTGTCTCTTGTCGTTCACGCCACCTGTTCTG
GCTGGTGGCCTCGCAACAGTCCTGGAATGCAAGCAGAAGTAGCAGCATAT
TTGCACAGAGGTGTACATTATGGTCAAGTTCGTATGTATGTTTGGTTTGT
TCCCAAATGAAAACAGCTGACATAATATGGAGAGTAGGACTTGCAGAAAA
CATCAACAAGGACAACATGTTGAGGTGCATGTATGTATTCGTTCTGCAAG
GATGCGCCATGTACACATCACTTCAAGACTCACAAGAGCTCCTGCTGACG

protein sequence of EsuBft100_15a-0001

>EsuBft100_15 ID=EsuBft100_15|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MNKNVAEAARRIFGNLPHSNVRTGNKVLRKNIIGQKIAEYYPQTTVPDMV
KMAEKEIPGVIMDHKREWRRQKRELDEGSKRGSSKKGEGKRST

mRNA from alignment at Scaffold_441:252782..255330-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2549bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)
TGCAGCAGCCAGCGCCGTGCTCGAGAGATTGCAGAGTGCCAAAGAGCACA
CCTACCACTGCAACGCTGACAGAGGAGGGGCTAGCCATGAACAAGAATGT
GGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCCCCACAGCAATGTCC
GTACTGGCAACAAGGTTTTGCGCAAGAACATCATTGGCCAGAAGATAGCA
GAGGTGTGTACCAACGTACCAACGTGCCAACCCACTGCGGAACCCATTTC
AGTCGTACAGCAGTACATGTATGCGTAACAGAGTAGCATTTGCCGTCCCC
GACTTCGTAAAATCCACGCTGAGTGAAGGGCAAGCCCTCATGGTCAACAT
GTTTTGACGTCTGGTCTTGAACGCGGAGGCGTGTACACTTGATTGAGTCT
ATGACTGCTGCGACCATGGGTGCACTGCTGTCATACGCAACTTGACATTT
GGACGTTTACCTCATGGTACACATATTACCGCTGTTTGAGAGATTCAAAG
CTGGCATCGAACACGGCTTCTTCCGATGCCCACAAGCTTGCGAATGTTAA
CACCCCAATACTCAAACCATATCTTCCTTCTACACCTCCCCAGTGTACTT
TGGGTTAGGGTTAGCAGATTGACCACCAACTGCTGTGGAGCCTGTAATGC
ATACCCACAGGGGAGATATCGCTGTGTGCTGCTCGGGGAACCGTAGAAAC
CTTGGTATTATGACAGCAGTGCTTCCGCTAACTCCATGGATTAATTGCTA
ATTCATCCTGTATTGAGCGCCACGACCCCAACTTGAAATTTGATGATTTC
GTGTGCGCGTGTGTGCAAGAGCGGTCGCACTACAGGGCAGCGCGTTTGGC
AACTGAAATGCCAACTCATGACAAAAGAAATGCGGGAAACTCTTCTGTTG
TCTAAAATTTTAGGTAACATTCCTATTCGTCTCCGATCAGAGCAATCTCA
GCCAACTGAAAGCGGTGGGTTACCATCAAAGTGCGCTGGGCTTCTGAACC
GAATCAGAAAGGAGCGAGAGCAGCCCCATATCAGCTACCTTAAAGTCCCT
TGGTGCGCTTGGTTCACTTCTTGTCCCAGAGGTTTAGAAATCGTTTCCTA
TCCTTGTTGACATCAACGGATTTTGCCTCTACTTTTGCTGCCATATTGGC
TCCTGATTATCCACGCAAGTCAAACCTTGGGTCATGTTCGGTTTGCTCTC
GTATCCTCCGCATCCACCGGTAATTCTTCTACCGCCTTGTCACCTAGCAT
GTTTGGTAACCGCAAACGCGCATTTTTTTGTCCTGCTGATATCCCGCGTG
TAATCTCCACGTCTTCCCAGTACTACCCGCAGACTACAGTCCCGGACATG
GTCAAAATGGCGGAGAAGGAGATTCCTGGCGTTATCATGGACCACAAGCG
AGAATGGCGACGACAAAAACGTGAACTAGACGAGGGATCAAAACGAGGTA
TGTAGTCGATGCAGCAGAATTCAAACACCGTGAACGTCTGGCTAGATTGG
GTGACGCACCAGGTGTACGACTTGTTCGCTGAAACTTTAATGGAAGATAT
TGCGGGTTGCCCCAAGCTCTGCTGTCGTGCTAAGGGCTGAGAGCCCAGAT
CAAGACAAACCGAACAGTGAGAGTAAGGAAGACATGCGCTGCTGCTACAC
TCCGGCGTCACAATGTCTGGGTTGCACTCGTGCGATAGTGCCCTCAGATT
TGGGCTATGTTCTTGCCCACAGTGATACTCTCTACATGTTGTGCTGGCCG
CACATTCGGCCAAGAGGCAAATGATCCAATTCAACGCCTTCTAAACACCC
TTCGTTCCGCTGTCAACACCGCGGTTCTGTTTTCTTGCTTGCGGACTTTC
TCGTCCCCACCCCTCTTGCTTGTTAAAAGGATCTTCGAAAAAAGGCGAGG
GAAAGCGATCAACATGATGCAGGCTCCGACCGTGCTTGGATGTTGTTTCT
ACCGTGGCGCATGGTCTTTGCTGTCGCAATTTGGTAGTGCGACTCTCCAC
CAGTAAGAAGAATGTAGATTTTCAAGCTGCAGGGTACAGGATACCTCCGC
ACTGATGGTTTTGATTGGAGGTGGTGTTGATTGGGTTTGCGTTGGATGCA
TTTTTCGTCAGCAAGAGTTGGACCCTTCACTGTGCATCAGCAGTAGAAAT
TGACCGCTCTTCTTCGAGCTGGACTCATGAAGCATCCATGGGACCGACCG
ATTGAATTAAGCTTCCTTGGCGTGAGGCATGATGTTGCTGCCTGGGGCGT
AGCTTTTGTGCTGCGCAGCTGTCTCTTGTCGTTCACGCCACCTGTTCTGG
CTGGTGGCCTCGCAACAGTCCTGGAATGCAAGCAGAAGTAGCAGCATATT
TGCACAGAGGTGTACATTATGGTCAAGTTCGTATGTATGTTTGGTTTGTT
CCCAAATGAAAACAGCTGACATAATATGGAGAGTAGGACTTGCAGAAAAC
ATCAACAAGGACAACATGTTGAGGTGCATGTATGTATTCGTTCTGCAAGG
ATGCGCCATGTACACATCACTTCAAGACTCACAAGAGCTCCTGCTGACG

Coding sequence (CDS) from alignment at Scaffold_441:252782..255330-

>EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)
ATGAACAAGAATGTGGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCC
CCACAGCAATGTCCGTACTGGCAACAAGGTTTTGCGCAAGAACATCATTG
GCCAGAAGATAGCAGAGTACTACCCGCAGACTACAGTCCCGGACATGGTC
AAAATGGCGGAGAAGGAGATTCCTGGCGTTATCATGGACCACAAGCGAGA
ATGGCGACGACAAAAACGTGAACTAGACGAGGGATCAAAACGAGGATCTT
CGAAAAAAGGCGAGGGAAAGCGATCAACATGA