EsuBft100_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft100_15a-0001
Unique Name	EsuBft100_15a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_441	contig	Scaffold_441:252782..255330 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	44056.XP_009038082.1
ProteomeId	EsuBft100_15
Protein domains	IPR013219
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	100
Hectar predicted targeting category	other localisation
Evalue	3.89e-05
EggNOG OGs	2D0C1@1\|root,2SDM7@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K17411
Description	Mitochondrial ribosomal subunit S27
COG category	S
BRITE	br01610,ko00000,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft100_15a	EsuBft100_15a	Ectocarpus subulatus male Bft15b	gene	Scaffold_441 252782..255330 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_15a-0001	EsuBft100_15	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_441 253414..255244 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_15a-0001-exon	EsuBft100_15a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 252782..253451 -
EsuBft100_15a-0001-exon	agat-exon-35334	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 253884..254010 -
EsuBft100_15a-0001-exon	agat-exon-35335	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 255128..255330 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_15a-0001-exon	agat-three_prime_utr-92	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 252782..253413 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_15a-0001-cds	EsuBft100_15a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_441 253414..253451 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_15a-0001-exon	agat-five_prime_utr-56	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_441 255245..255330 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:252782..255330-
coding sequence from alignment at Scaffold_441:252782..255330-

spliced messenger RNA

>EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1000bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCAGCAGCCAGCGCCGTGCTCGAGAGATTGCAGAGTGCCAAAGAGCACA
CCTACCACTGCAACGCTGACAGAGGAGGGGCTAGCCATGAACAAGAATGT
GGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCCCCACAGCAATGTCC
GTACTGGCAACAAGGTTTTGCGCAAGAACATCATTGGCCAGAAGATAGCA
GAGTACTACCCGCAGACTACAGTCCCGGACATGGTCAAAATGGCGGAGAA
GGAGATTCCTGGCGTTATCATGGACCACAAGCGAGAATGGCGACGACAAA
AACGTGAACTAGACGAGGGATCAAAACGAGGATCTTCGAAAAAAGGCGAG
GGAAAGCGATCAACATGATGCAGGCTCCGACCGTGCTTGGATGTTGTTTC
TACCGTGGCGCATGGTCTTTGCTGTCGCAATTTGGTAGTGCGACTCTCCA
CCAGTAAGAAGAATGTAGATTTTCAAGCTGCAGGGTACAGGATACCTCCG
CACTGATGGTTTTGATTGGAGGTGGTGTTGATTGGGTTTGCGTTGGATGC
ATTTTTCGTCAGCAAGAGTTGGACCCTTCACTGTGCATCAGCAGTAGAAA
TTGACCGCTCTTCTTCGAGCTGGACTCATGAAGCATCCATGGGACCGACC
GATTGAATTAAGCTTCCTTGGCGTGAGGCATGATGTTGCTGCCTGGGGCG
TAGCTTTTGTGCTGCGCAGCTGTCTCTTGTCGTTCACGCCACCTGTTCTG
GCTGGTGGCCTCGCAACAGTCCTGGAATGCAAGCAGAAGTAGCAGCATAT
TTGCACAGAGGTGTACATTATGGTCAAGTTCGTATGTATGTTTGGTTTGT
TCCCAAATGAAAACAGCTGACATAATATGGAGAGTAGGACTTGCAGAAAA
CATCAACAAGGACAACATGTTGAGGTGCATGTATGTATTCGTTCTGCAAG
GATGCGCCATGTACACATCACTTCAAGACTCACAAGAGCTCCTGCTGACG

protein sequence of EsuBft100_15a-0001

>EsuBft100_15 ID=EsuBft100_15|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MNKNVAEAARRIFGNLPHSNVRTGNKVLRKNIIGQKIAEYYPQTTVPDMV
KMAEKEIPGVIMDHKREWRRQKRELDEGSKRGSSKKGEGKRST

mRNA from alignment at Scaffold_441:252782..255330-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2549bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)
TGCAGCAGCCAGCGCCGTGCTCGAGAGATTGCAGAGTGCCAAAGAGCACA
CCTACCACTGCAACGCTGACAGAGGAGGGGCTAGCCATGAACAAGAATGT
GGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCCCCACAGCAATGTCC
GTACTGGCAACAAGGTTTTGCGCAAGAACATCATTGGCCAGAAGATAGCA
GAGGTGTGTACCAACGTACCAACGTGCCAACCCACTGCGGAACCCATTTC
AGTCGTACAGCAGTACATGTATGCGTAACAGAGTAGCATTTGCCGTCCCC
GACTTCGTAAAATCCACGCTGAGTGAAGGGCAAGCCCTCATGGTCAACAT
GTTTTGACGTCTGGTCTTGAACGCGGAGGCGTGTACACTTGATTGAGTCT
ATGACTGCTGCGACCATGGGTGCACTGCTGTCATACGCAACTTGACATTT
GGACGTTTACCTCATGGTACACATATTACCGCTGTTTGAGAGATTCAAAG
CTGGCATCGAACACGGCTTCTTCCGATGCCCACAAGCTTGCGAATGTTAA
CACCCCAATACTCAAACCATATCTTCCTTCTACACCTCCCCAGTGTACTT
TGGGTTAGGGTTAGCAGATTGACCACCAACTGCTGTGGAGCCTGTAATGC
ATACCCACAGGGGAGATATCGCTGTGTGCTGCTCGGGGAACCGTAGAAAC
CTTGGTATTATGACAGCAGTGCTTCCGCTAACTCCATGGATTAATTGCTA
ATTCATCCTGTATTGAGCGCCACGACCCCAACTTGAAATTTGATGATTTC
GTGTGCGCGTGTGTGCAAGAGCGGTCGCACTACAGGGCAGCGCGTTTGGC
AACTGAAATGCCAACTCATGACAAAAGAAATGCGGGAAACTCTTCTGTTG
TCTAAAATTTTAGGTAACATTCCTATTCGTCTCCGATCAGAGCAATCTCA
GCCAACTGAAAGCGGTGGGTTACCATCAAAGTGCGCTGGGCTTCTGAACC
GAATCAGAAAGGAGCGAGAGCAGCCCCATATCAGCTACCTTAAAGTCCCT
TGGTGCGCTTGGTTCACTTCTTGTCCCAGAGGTTTAGAAATCGTTTCCTA
TCCTTGTTGACATCAACGGATTTTGCCTCTACTTTTGCTGCCATATTGGC
TCCTGATTATCCACGCAAGTCAAACCTTGGGTCATGTTCGGTTTGCTCTC
GTATCCTCCGCATCCACCGGTAATTCTTCTACCGCCTTGTCACCTAGCAT
GTTTGGTAACCGCAAACGCGCATTTTTTTGTCCTGCTGATATCCCGCGTG
TAATCTCCACGTCTTCCCAGTACTACCCGCAGACTACAGTCCCGGACATG
GTCAAAATGGCGGAGAAGGAGATTCCTGGCGTTATCATGGACCACAAGCG
AGAATGGCGACGACAAAAACGTGAACTAGACGAGGGATCAAAACGAGGTA
TGTAGTCGATGCAGCAGAATTCAAACACCGTGAACGTCTGGCTAGATTGG
GTGACGCACCAGGTGTACGACTTGTTCGCTGAAACTTTAATGGAAGATAT
TGCGGGTTGCCCCAAGCTCTGCTGTCGTGCTAAGGGCTGAGAGCCCAGAT
CAAGACAAACCGAACAGTGAGAGTAAGGAAGACATGCGCTGCTGCTACAC
TCCGGCGTCACAATGTCTGGGTTGCACTCGTGCGATAGTGCCCTCAGATT
TGGGCTATGTTCTTGCCCACAGTGATACTCTCTACATGTTGTGCTGGCCG
CACATTCGGCCAAGAGGCAAATGATCCAATTCAACGCCTTCTAAACACCC
TTCGTTCCGCTGTCAACACCGCGGTTCTGTTTTCTTGCTTGCGGACTTTC
TCGTCCCCACCCCTCTTGCTTGTTAAAAGGATCTTCGAAAAAAGGCGAGG
GAAAGCGATCAACATGATGCAGGCTCCGACCGTGCTTGGATGTTGTTTCT
ACCGTGGCGCATGGTCTTTGCTGTCGCAATTTGGTAGTGCGACTCTCCAC
CAGTAAGAAGAATGTAGATTTTCAAGCTGCAGGGTACAGGATACCTCCGC
ACTGATGGTTTTGATTGGAGGTGGTGTTGATTGGGTTTGCGTTGGATGCA
TTTTTCGTCAGCAAGAGTTGGACCCTTCACTGTGCATCAGCAGTAGAAAT
TGACCGCTCTTCTTCGAGCTGGACTCATGAAGCATCCATGGGACCGACCG
ATTGAATTAAGCTTCCTTGGCGTGAGGCATGATGTTGCTGCCTGGGGCGT
AGCTTTTGTGCTGCGCAGCTGTCTCTTGTCGTTCACGCCACCTGTTCTGG
CTGGTGGCCTCGCAACAGTCCTGGAATGCAAGCAGAAGTAGCAGCATATT
TGCACAGAGGTGTACATTATGGTCAAGTTCGTATGTATGTTTGGTTTGTT
CCCAAATGAAAACAGCTGACATAATATGGAGAGTAGGACTTGCAGAAAAC
ATCAACAAGGACAACATGTTGAGGTGCATGTATGTATTCGTTCTGCAAGG
ATGCGCCATGTACACATCACTTCAAGACTCACAAGAGCTCCTGCTGACG

Coding sequence (CDS) from alignment at Scaffold_441:252782..255330-

>EsuBft100_15a-0001 ID=EsuBft100_15a-0001|Name=EsuBft100_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_441:252782..255330- (Ectocarpus subulatus male Bft15b)
ATGAACAAGAATGTGGCGGAAGCCGCCCGGCGAATATTCGGCAACCTTCC
CCACAGCAATGTCCGTACTGGCAACAAGGTTTTGCGCAAGAACATCATTG
GCCAGAAGATAGCAGAGTACTACCCGCAGACTACAGTCCCGGACATGGTC
AAAATGGCGGAGAAGGAGATTCCTGGCGTTATCATGGACCACAAGCGAGA
ATGGCGACGACAAAAACGTGAACTAGACGAGGGATCAAAACGAGGATCTT
CGAAAAAAGGCGAGGGAAAGCGATCAACATGA