Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft100_10 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 113 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_10a-0001 ID=EsuBft100_10a-0001|Name=EsuBft100_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1138bp|location=Sequence derived from alignment at Scaffold_441:198130..199764- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGAAGAGAGCCAGTGCACGGCGAGGCAGGAGAGGGAGAGCATCGACCAGC
GGGCAGGACGTCAACCTCCAATTGTGATCCGGAACCAGGACGTCGATAAA
GGCGCTTCAATATATCATGTTCCCGTGGTTATTCTCAACATGGCAGCCGT
CGCAACAGCAGCTGCCATCAGCATGTGCTTTATAGAAGCGGAGGAACACC
AGCAAGTGCGGTGCAACTCATCTGCGGTCTGCTCTGGAAGCCAGAGGAAG
CCCGACGCTTTGGCCGCCGCGAAATGGTTGCTGGCGGCGTCCTTATGGGC
CCATCGAGTGCTTTCGCGTCGGCGATGCGAGCGAGTGGACTCGGCAGTCG
CTCTCCATCGCAACGCCGCCGCCAACAACCATGCCCTCTCCCGCACCGCC
CCCCGTCGCATATTTTCAACGCCGCTTCCTGCCACGGTACCACCGCCCGC
GGCGTCGCCCCCGCCGTTGCCCCCGCGGGCCAGCCGCCTCCTGGCGCGTC
CGTCACCGTTGCCATTGTGCTCTCCGGGCCAGCCACCGCCGCGGCCGTAC
CCTGCGATGCCCCCGATCACGGCACACGCTATTCGACAGCTTGGCCCAGG
TAAGAAGACAGAGGGTTTGCAAGACTCGCGGCTGCATGGCCACACGAGAT
CGGACGCTAGGCACAGCACGGGCTTTATCTCGACGTTGGGCAGGAACACT
CGGGTGTCTACGCTGGAGGCTCGGAGCGCTGTGGATGGGGAGCGCAAGGA
GCTGGGGGGAGCAGCGGCGGCCGAAGAGAAGGCGGGATTTATTGCAGCAG
TGGACCCGGGGGGAGTGGGAGGAGCAGACACACCATATCCTTTTGCAACG
CTCCTCGCGAACCGGGAAGTTATGGACGCCACGCTGCACGACCAGCGACC
GCCGGATCAACTCCCTGAACTCCCAGGCAACGAGGCCAGCGACCTTCGTT
TTCCCAAGCGCTTCAACAAGGCCATGGCTTCGGAGCGTCGGCACCTCTGG
AGCGATTCCATGATTTTTTTTTTTTACGGGTTGTTGGATGCGGACATTCA
CTTCGGCAAAAAAGCAATCAGTGCAACACACGATCAATGCCAAAGGTGGG
TAACGATTGGACGGAAGATGGATTTGAAGGCCCACTAA back to topprotein sequence of EsuBft100_10a-0001 >EsuBft100_10 ID=EsuBft100_10|Name=EsuBft100_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=332bp
MAAVATAAAISMCFIEAEEHQQVRCNSSAVCSGSQRKPDALAAAKWLLAA
SLWAHRVLSRRRCERVDSAVALHRNAAANNHALSRTAPRRIFSTPLPATV
PPPAASPPPLPPRASRLLARPSPLPLCSPGQPPPRPYPAMPPITAHAIRQ
LGPGKKTEGLQDSRLHGHTRSDARHSTGFISTLGRNTRVSTLEARSAVDG
ERKELGGAAAAEEKAGFIAAVDPGGVGGADTPYPFATLLANREVMDATLH
DQRPPDQLPELPGNEASDLRFPKRFNKAMASERRHLWSDSMIFFFYGLLD
ADIHFGKKAISATHDQCQRWVTIGRKMDLKAH back to topmRNA from alignment at Scaffold_441:198130..199764- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_10a-0001 ID=EsuBft100_10a-0001|Name=EsuBft100_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1635bp|location=Sequence derived from alignment at Scaffold_441:198130..199764- (Ectocarpus subulatus male Bft15b)
TGAAGAGAGCCAGTGCACGGCGAGGCAGGAGAGGGAGAGCATCGACCAGC
GGGCAGGACGTCAACCTCCAATTGTGATCCGGAACCAGGACGTCGATAAA
GGCGCTTCAATATATCATGTTCCCGTGGTTATTCTCAACATGGCAGCCGT
CGCAACAGCAGCTGCCATCAGCATGTGCTTTATAGAAGCGGAGGAACACC
AGCAAGTGCGGTGCAACTCATCTGCGGTCTGCTCTGGAAGCCAGAGGAAG
CCCGACGCTTTGGCCGCCGCGAAATGGTTGCTGGCGGCGTCCTTATGGGC
CCATCGAGTGCTTTCGCGTCGGCGATGCGAGCGAGTGGACTCGTGATACT
CTTCGGCGTTTCTGCACTCCGCCTGATGTTCCGCATTTTTTGAGTGCCAT
TTGACGCATCATGAAGCCATGTGTCTTCAACGTCGACTTCTCTTCCATGC
CCGGCCTTACAAGCGCGGTGACGCCTTTTGACTGGGATGGATGAAGTGGC
TGCTGACGCGATCAACCAATCGGAGACGAACGCAGTGGGGGGAGCAAGCG
CCGTCGTGGGTGCTGCCTTCTTGCAGCCTGGCTACATTCGCGAGAAGCGC
CGTACAAAGCTCGATGACCAGGCCAGATTCGCGGCGGCAAACGTTCGAGC
GGTATCGTGAAAATCCTGAATGCTCAGCCCGGCCGCGTTGCCTACACCAA
CAACATGGCGTGGGTGGCGACGGCGCCAGCCGGTGAGGGAGGTTCTTCTG
GTATCCCCGCTATGCCGACATCTCCCACGCCCACGAGCCGGTCATCTCGG
ACAATTTTAGTTCAGCATCTTCGCCGTCGCCCTCTTTAGGGCAGTCGCTC
TCCATCGCAACGCCGCCGCCAACAACCATGCCCTCTCCCGCACCGCCCCC
CGTCGCATATTTTCAACGCCGCTTCCTGCCACGGTACCACCGCCCGCGGC
GTCGCCCCCGCCGTTGCCCCCGCGGGCCAGCCGCCTCCTGGCGCGTCCGT
CACCGTTGCCATTGTGCTCTCCGGGCCAGCCACCGCCGCGGCCGTACCCT
GCGATGCCCCCGATCACGGCACACGCTATTCGACAGCTTGGCCCAGGTAA
GAAGACAGAGGGTTTGCAAGACTCGCGGCTGCATGGCCACACGAGATCGG
ACGCTAGGCACAGCACGGGCTTTATCTCGACGTTGGGCAGGAACACTCGG
GTGTCTACGCTGGAGGCTCGGAGCGCTGTGGATGGGGAGCGCAAGGAGCT
GGGGGGAGCAGCGGCGGCCGAAGAGAAGGCGGGATTTATTGCAGCAGTGG
ACCCGGGGGGAGTGGGAGGAGCAGACACACCATATCCTTTTGCAACGCTC
CTCGCGAACCGGGAAGTTATGGACGCCACGCTGCACGACCAGCGACCGCC
GGATCAACTCCCTGAACTCCCAGGCAACGAGGCCAGCGACCTTCGTTTTC
CCAAGCGCTTCAACAAGGCCATGGCTTCGGAGCGTCGGCACCTCTGGAGC
GATTCCATGATTTTTTTTTTTTACGGGTTGTTGGATGCGGACATTCACTT
CGGCAAAAAAGCAATCAGTGCAACACACGATCAATGCCAAAGGTGGGTAA
CGATTGGACGGAAGATGGATTTGAAGGCCCACTAA back to topCoding sequence (CDS) from alignment at Scaffold_441:198130..199764- >EsuBft100_10a-0001 ID=EsuBft100_10a-0001|Name=EsuBft100_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=999bp|location=Sequence derived from alignment at Scaffold_441:198130..199764- (Ectocarpus subulatus male Bft15b)
ATGGCAGCCGTCGCAACAGCAGCTGCCATCAGCATGTGCTTTATAGAAGC
GGAGGAACACCAGCAAGTGCGGTGCAACTCATCTGCGGTCTGCTCTGGAA
GCCAGAGGAAGCCCGACGCTTTGGCCGCCGCGAAATGGTTGCTGGCGGCG
TCCTTATGGGCCCATCGAGTGCTTTCGCGTCGGCGATGCGAGCGAGTGGA
CTCGGCAGTCGCTCTCCATCGCAACGCCGCCGCCAACAACCATGCCCTCT
CCCGCACCGCCCCCCGTCGCATATTTTCAACGCCGCTTCCTGCCACGGTA
CCACCGCCCGCGGCGTCGCCCCCGCCGTTGCCCCCGCGGGCCAGCCGCCT
CCTGGCGCGTCCGTCACCGTTGCCATTGTGCTCTCCGGGCCAGCCACCGC
CGCGGCCGTACCCTGCGATGCCCCCGATCACGGCACACGCTATTCGACAG
CTTGGCCCAGGTAAGAAGACAGAGGGTTTGCAAGACTCGCGGCTGCATGG
CCACACGAGATCGGACGCTAGGCACAGCACGGGCTTTATCTCGACGTTGG
GCAGGAACACTCGGGTGTCTACGCTGGAGGCTCGGAGCGCTGTGGATGGG
GAGCGCAAGGAGCTGGGGGGAGCAGCGGCGGCCGAAGAGAAGGCGGGATT
TATTGCAGCAGTGGACCCGGGGGGAGTGGGAGGAGCAGACACACCATATC
CTTTTGCAACGCTCCTCGCGAACCGGGAAGTTATGGACGCCACGCTGCAC
GACCAGCGACCGCCGGATCAACTCCCTGAACTCCCAGGCAACGAGGCCAG
CGACCTTCGTTTTCCCAAGCGCTTCAACAAGGCCATGGCTTCGGAGCGTC
GGCACCTCTGGAGCGATTCCATGATTTTTTTTTTTTACGGGTTGTTGGAT
GCGGACATTCACTTCGGCAAAAAAGCAATCAGTGCAACACACGATCAATG
CCAAAGGTGGGTAACGATTGGACGGAAGATGGATTTGAAGGCCCACTAA back to top
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